Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47147 * 2 1 4 4 C 1.53003 * 109.46931 * 119.99837 * 2 1 3 5 5 H 1.09000 * 109.46931 * 299.99650 * 4 2 1 6 6 C 1.52999 * 109.46931 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47242 * 60.00164 * 4 2 1 8 8 C 1.50698 * 109.46890 * 185.00044 * 7 4 2 9 9 O 1.21281 * 120.00481 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99393 * 179.97438 * 8 7 4 11 11 C 1.47016 * 125.65470 * 359.95667 * 10 8 7 12 12 C 1.54369 * 107.29019 * 181.12713 * 11 10 8 13 13 C 1.55146 * 102.92107 * 22.13885 * 12 11 10 14 14 H 1.09005 * 111.00366 * 82.63800 * 13 12 11 15 15 N 1.46501 * 111.00699 * 206.45122 * 13 12 11 16 16 C 1.46498 * 119.99723 * 55.42170 * 15 13 12 17 17 C 1.36933 * 120.00416 * 235.42077 * 15 13 12 18 18 H 1.08005 * 119.99610 * 340.49353 * 17 15 13 19 19 C 1.38804 * 120.00108 * 160.21801 * 17 15 13 20 20 N 1.31622 * 120.00159 * 347.26552 * 19 17 15 21 21 Si 1.86808 * 120.00067 * 167.26736 * 19 17 15 22 22 H 1.48497 * 109.46918 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46879 * 120.00020 * 21 19 17 24 24 H 1.48498 * 109.46945 * 240.00234 * 21 19 17 25 25 C 1.47426 * 125.64481 * 179.97438 * 10 8 7 26 26 H 1.09000 * 109.47027 * 300.00571 * 1 2 3 27 27 H 1.09006 * 109.47208 * 59.99892 * 1 2 3 28 28 H 1.09001 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47441 * 239.99684 * 2 1 3 30 30 H 1.09005 * 109.46559 * 299.99672 * 3 2 1 31 31 H 1.08996 * 109.47208 * 59.99541 * 3 2 1 32 32 H 1.08996 * 109.46940 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47266 * 179.97438 * 6 4 2 34 34 H 1.09001 * 109.47315 * 300.00317 * 6 4 2 35 35 H 1.09001 * 109.47264 * 60.00135 * 6 4 2 36 36 H 1.08993 * 109.46995 * 64.99633 * 7 4 2 37 37 H 1.09002 * 109.46552 * 304.99878 * 7 4 2 38 38 H 1.09004 * 109.88365 * 300.51726 * 11 10 8 39 39 H 1.09004 * 109.88201 * 61.52347 * 11 10 8 40 40 H 1.09002 * 110.70527 * 263.79338 * 12 11 10 41 41 H 1.09001 * 110.75460 * 140.50708 * 12 11 10 42 42 H 1.09002 * 109.46962 * 264.83500 * 16 15 13 43 43 H 1.08998 * 109.47343 * 24.82833 * 16 15 13 44 44 H 1.08999 * 109.47337 * 144.83489 * 16 15 13 45 45 H 0.97006 * 119.99986 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.36433 * 36.99765 * 25 10 8 47 47 H 1.09005 * 110.36585 * 274.67762 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 3.5699 -0.7218 1.2490 7 6 1.5300 -2.1637 1.2493 8 6 1.9286 -2.8374 2.5371 9 8 2.5590 -2.2243 3.3724 10 7 1.5846 -4.1212 2.7605 11 6 0.8242 -4.9775 1.8385 12 6 0.6460 -6.3478 2.5266 13 6 0.8271 -6.0076 4.0294 14 1 -0.0998 -5.6269 4.4583 15 7 1.3091 -7.1716 4.7770 16 6 2.5375 -7.8525 4.3602 17 6 0.6116 -7.6232 5.8654 18 1 -0.0907 -6.9722 6.3648 19 6 0.8029 -8.9195 6.3234 20 7 1.4523 -9.7908 5.5806 21 14 0.1387 -9.4276 7.9938 22 1 -0.5480 -8.2724 8.6256 23 1 -0.8257 -10.5440 7.8243 24 1 1.2614 -9.8704 8.8591 25 6 1.9082 -4.8994 3.9701 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 3.9333 -1.2352 2.1392 34 1 3.9329 -1.2359 0.3590 35 1 3.9337 0.3057 1.2487 36 1 1.9646 -2.7027 0.4076 37 1 0.4437 -2.1649 1.1597 38 1 -0.1513 -4.5336 1.6396 39 1 1.3741 -5.0972 0.9050 40 1 1.4123 -7.0483 2.1947 41 1 -0.3506 -6.7475 2.3391 42 1 2.2850 -8.6977 3.7199 43 1 3.1701 -7.1561 3.8098 44 1 3.0713 -8.2103 5.2406 45 1 1.5863 -10.6966 5.9008 46 1 1.8511 -4.2658 4.8553 47 1 2.9007 -5.3416 3.8824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189328523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = -28.943754 kcal Electronic energy + Delta-G solvation = -23075.343438 eV Core-core repulsion = 19872.254227 eV Total energy + Delta-G solvation = -3203.089210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99185 -38.06238 -36.81613 -34.81187 -31.90368 -31.41064 -29.82799 -28.92345 -27.77695 -26.31463 -26.04901 -23.78484 -22.67305 -22.21474 -19.79477 -19.30396 -18.82200 -17.06607 -16.89774 -15.95176 -15.58141 -14.94643 -14.76133 -14.51146 -14.09694 -13.72880 -13.44633 -13.35762 -13.23698 -12.69783 -12.51908 -12.49134 -12.27357 -12.07430 -11.96722 -11.89148 -11.67186 -11.33237 -11.21858 -10.95354 -10.82634 -10.74317 -10.57633 -10.52859 -10.49137 -10.46202 -10.23379 -9.89079 -9.86726 -9.44186 -8.60422 -8.29774 -6.85746 -5.77241 -3.22045 2.86981 3.25178 3.36086 3.43865 3.45853 4.45144 4.51749 4.61287 4.69009 4.89729 4.99377 5.03414 5.24711 5.29215 5.35956 5.39212 5.43867 5.46390 5.52841 5.57233 5.61089 5.64695 5.72871 5.75641 5.78147 5.87357 5.91668 5.93240 6.01706 6.03855 6.15757 6.29790 6.35043 6.38787 6.45009 6.56842 6.65217 6.77550 6.86835 7.37315 7.68010 7.78064 7.84346 8.32038 8.43399 9.17911 9.80413 10.27433 11.27562 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038561 B = 0.003131 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.950238 B = 8940.685978 C = 8996.118562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.135 4.135 8 C 0.523 3.477 9 O -0.546 6.546 10 N -0.615 5.615 11 C 0.103 3.897 12 C -0.152 4.152 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.587 5.587 16 C 0.161 3.839 17 C -0.257 4.257 18 H 0.072 0.928 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.085 3.915 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.000 1.000 44 H 0.047 0.953 45 H 0.252 0.748 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 15.910 -13.458 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.089 4.089 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.175 4.175 8 C 0.312 3.688 9 O -0.424 6.424 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.308 5.308 16 C 0.017 3.983 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.040 4.040 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.344 16.097 -12.956 20.666 hybrid contribution -0.384 -0.570 0.711 0.989 sum -0.728 15.526 -12.245 19.787 Atomic orbital electron populations 1.21935 0.95410 1.01869 1.01691 1.21171 0.95596 0.96310 0.98062 1.21879 1.01314 0.95830 1.01495 1.20930 0.96439 0.93406 0.98087 0.90444 1.22003 0.94834 1.01727 1.02605 1.21804 1.02848 0.96859 0.95943 1.20325 0.79398 0.80201 0.88834 1.90648 1.40709 1.63602 1.47438 1.48555 1.54883 1.10990 1.20472 1.22050 0.95211 0.91927 0.92855 1.23232 1.02778 0.94381 0.98817 1.21398 0.94568 0.87761 0.90019 0.90468 1.43856 1.25141 1.30400 1.31362 1.20830 0.85983 0.93044 0.98455 1.19300 1.20711 0.95115 1.03507 0.91060 1.24972 1.00273 0.95445 0.98941 1.70102 1.45571 1.03808 1.35780 0.86146 0.78155 0.78221 0.83792 1.20287 1.21734 1.21567 1.22976 1.00699 0.93733 0.86556 0.92619 0.92858 0.92369 0.91287 0.92983 0.92705 0.92306 0.90592 0.93551 0.92795 0.89310 0.88919 0.91980 0.92161 0.90555 0.90545 0.95084 0.98168 0.93421 0.93742 0.91068 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.85 37.16 0.33 -0.83 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.14 8.84 37.16 0.33 -0.82 16 4 C -0.07 -0.74 1.62 -90.62 -0.15 -0.89 16 5 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 6 C -0.15 -1.74 8.58 37.16 0.32 -1.42 16 7 C -0.13 -1.48 4.15 -27.89 -0.12 -1.59 16 8 C 0.52 8.07 7.57 -10.98 -0.08 7.99 16 9 O -0.55 -10.24 14.22 5.56 0.08 -10.16 16 10 N -0.61 -9.69 3.33 -170.48 -0.57 -10.26 16 11 C 0.10 1.36 6.49 -3.04 -0.02 1.34 16 12 C -0.15 -2.49 6.52 -24.88 -0.16 -2.65 16 13 C 0.17 3.42 3.54 -65.78 -0.23 3.19 16 14 H 0.08 1.54 7.93 -51.93 -0.41 1.13 16 15 N -0.59 -14.26 2.97 -171.03 -0.51 -14.77 16 16 C 0.16 3.87 7.65 59.85 0.46 4.33 16 17 C -0.26 -6.91 9.66 -15.06 -0.15 -7.05 16 18 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.91 -25.90 10.50 55.49 0.58 -25.32 16 21 Si 0.91 21.61 29.57 -169.99 -5.03 16.58 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.08 1.58 6.46 -2.52 -0.02 1.56 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.88 6.17 -51.93 -0.32 0.56 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.34 7.16 -51.93 -0.37 0.97 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 43 H 0.00 0.00 6.24 -51.93 -0.32 -0.33 16 44 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 47 H 0.07 1.33 6.22 -51.93 -0.32 1.01 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -30.01 356.41 -8.29 -38.30 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.41 Total: -1.87 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 0.20 Total: 2.12 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.49 Total: -50.35 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.01 -8.29 -38.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189328523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.354 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds