Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47363 * 2 1 4 4 C 1.53002 * 109.47099 * 119.99934 * 2 1 3 5 5 H 1.08998 * 109.47028 * 300.00042 * 4 2 1 6 6 C 1.53000 * 109.47099 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.47021 * 60.00203 * 4 2 1 8 8 C 1.50699 * 109.46853 * 185.00006 * 7 4 2 9 9 O 1.21272 * 120.00282 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99416 * 180.02562 * 8 7 4 11 11 C 1.47020 * 125.65097 * 359.69054 * 10 8 7 12 12 C 1.54330 * 107.26509 * 178.85176 * 11 10 8 13 13 C 1.55153 * 103.02261 * 338.14166 * 12 11 10 14 14 H 1.09008 * 111.00093 * 277.23317 * 13 12 11 15 15 N 1.46500 * 111.04013 * 153.39583 * 13 12 11 16 16 C 1.46492 * 119.99811 * 307.78708 * 15 13 12 17 17 C 1.36936 * 119.99940 * 127.78487 * 15 13 12 18 18 H 1.08007 * 120.00005 * 328.51627 * 17 15 13 19 19 C 1.38807 * 120.00008 * 148.52263 * 17 15 13 20 20 N 1.31625 * 119.99960 * 153.81937 * 19 17 15 21 21 Si 1.86801 * 119.99870 * 333.81625 * 19 17 15 22 22 H 1.48502 * 109.46928 * 94.89056 * 21 19 17 23 23 H 1.48507 * 109.47105 * 214.88554 * 21 19 17 24 24 H 1.48500 * 109.47081 * 334.88768 * 21 19 17 25 25 C 1.47426 * 125.64463 * 180.02562 * 10 8 7 26 26 H 1.08998 * 109.47215 * 300.00138 * 1 2 3 27 27 H 1.08998 * 109.46582 * 59.99802 * 1 2 3 28 28 H 1.09000 * 109.46797 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47538 * 240.00285 * 2 1 3 30 30 H 1.08998 * 109.46995 * 300.00314 * 3 2 1 31 31 H 1.09002 * 109.46426 * 60.00113 * 3 2 1 32 32 H 1.08998 * 109.47423 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47281 * 60.00325 * 6 4 2 34 34 H 1.08998 * 109.47321 * 180.02562 * 6 4 2 35 35 H 1.08998 * 109.47215 * 299.99928 * 6 4 2 36 36 H 1.08998 * 109.46619 * 305.00303 * 7 4 2 37 37 H 1.08997 * 109.46715 * 64.99603 * 7 4 2 38 38 H 1.09002 * 109.88524 * 298.39776 * 11 10 8 39 39 H 1.08995 * 109.88453 * 59.56173 * 11 10 8 40 40 H 1.09003 * 110.84894 * 219.67053 * 12 11 10 41 41 H 1.09003 * 110.51564 * 96.45437 * 12 11 10 42 42 H 1.09004 * 109.47450 * 95.54652 * 16 15 13 43 43 H 1.09004 * 109.47078 * 215.54573 * 16 15 13 44 44 H 1.08997 * 109.47380 * 335.54085 * 16 15 13 45 45 H 0.97001 * 119.99749 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.36820 * 322.92709 * 25 10 8 47 47 H 1.09006 * 110.36688 * 85.25231 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 1.5300 -2.1638 1.2492 8 6 1.9287 -2.8375 2.5369 9 8 2.5582 -2.2242 3.3726 10 7 1.5856 -4.1217 2.7598 11 6 0.8214 -4.9766 1.8396 12 6 0.6962 -6.3650 2.5017 13 6 1.8749 -6.3789 3.5105 14 1 2.8070 -6.6567 3.0184 15 7 1.5926 -7.2720 4.6370 16 6 0.3427 -7.1312 5.3879 17 6 2.4971 -8.2384 4.9879 18 1 3.1175 -8.6973 4.2322 19 6 2.6166 -8.6282 6.3147 20 7 3.0527 -9.8347 6.6095 21 14 2.1585 -7.4407 7.6819 22 1 0.7559 -7.6876 8.1027 23 1 3.0659 -7.6450 8.8397 24 1 2.2897 -6.0456 7.1904 25 6 1.9084 -4.8996 3.9698 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 3.9337 0.3057 1.2488 34 1 3.9334 -1.2360 2.1387 35 1 3.9330 -1.2359 0.3590 36 1 0.4437 -2.1650 1.1596 37 1 1.9646 -2.7027 0.4074 38 1 -0.1688 -4.5517 1.6748 39 1 1.3509 -5.0666 0.8912 40 1 0.8110 -7.1586 1.7634 41 1 -0.2576 -6.4557 3.0217 42 1 -0.3969 -7.8299 4.9968 43 1 0.5251 -7.3468 6.4407 44 1 -0.0301 -6.1122 5.2852 45 1 3.1358 -10.1072 7.5367 46 1 2.9015 -4.6383 4.3351 47 1 1.1606 -4.7254 4.7436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189328524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -22.243226 kcal Electronic energy + Delta-G solvation = -23218.096299 eV Core-core repulsion = 20015.297645 eV Total energy + Delta-G solvation = -3202.798654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06540 -38.17961 -36.90554 -34.99198 -31.99782 -31.57655 -30.29330 -29.00184 -28.06547 -26.51509 -26.13302 -23.94240 -22.75850 -22.30168 -19.84949 -19.43475 -18.89170 -17.10802 -16.94357 -16.26148 -15.48771 -15.38363 -14.92437 -14.49658 -14.38727 -13.74023 -13.68172 -13.45843 -13.24475 -12.79029 -12.63127 -12.49525 -12.39848 -12.33524 -12.06578 -12.01617 -11.92721 -11.71842 -11.68370 -11.24849 -10.94114 -10.83681 -10.76222 -10.60333 -10.57125 -10.55285 -10.17610 -9.98722 -9.57235 -9.49438 -8.54409 -8.37981 -7.01113 -6.06371 -3.41493 2.81789 3.17664 3.28798 3.46864 3.51734 4.46144 4.48268 4.57745 4.65520 4.76092 4.85008 4.94862 5.07367 5.20867 5.23070 5.30228 5.36641 5.38818 5.40674 5.44574 5.55745 5.60418 5.65817 5.69598 5.71793 5.74050 5.85853 5.87421 5.90579 6.00898 6.09555 6.12533 6.19552 6.28114 6.32274 6.39210 6.43028 6.51528 6.58816 6.66168 6.75878 7.76844 7.92037 8.27129 8.37754 8.88082 9.64029 10.00009 11.09062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.003561 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.410496 B = 7860.630266 C = 8171.172137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.134 4.134 8 C 0.523 3.477 9 O -0.543 6.543 10 N -0.617 5.617 11 C 0.104 3.896 12 C -0.150 4.150 13 C 0.172 3.828 14 H 0.087 0.913 15 N -0.595 5.595 16 C 0.109 3.891 17 C -0.274 4.274 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.286 1.286 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.081 3.919 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.023 0.977 43 H 0.040 0.960 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.074 0.926 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 17.059 -14.891 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.089 4.089 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.174 4.174 8 C 0.312 3.688 9 O -0.421 6.421 10 N -0.351 5.351 11 C -0.019 4.019 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.105 0.895 15 N -0.316 5.316 16 C -0.035 4.035 17 C -0.402 4.402 18 H 0.102 0.898 19 C -0.165 4.165 20 N -0.534 5.534 21 Si 0.710 3.290 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.044 4.044 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.827 17.298 -14.310 23.194 hybrid contribution -0.363 0.536 0.900 1.108 sum -6.190 17.835 -13.411 23.157 Atomic orbital electron populations 1.21932 0.95451 1.01811 1.01689 1.21170 0.95552 0.96342 0.98065 1.21880 1.01361 0.95805 1.01494 1.20934 0.96513 0.93361 0.98080 0.90496 1.22005 0.94751 1.01770 1.02675 1.21810 1.02761 0.96918 0.95937 1.20362 0.79357 0.80236 0.88843 1.90657 1.40536 1.63426 1.47490 1.48593 1.54989 1.11071 1.20451 1.22023 0.95273 0.91467 0.93186 1.23141 1.01533 0.94405 0.99900 1.21600 0.96228 0.87034 0.88911 0.89507 1.44036 1.17207 1.35833 1.34559 1.21335 0.88403 0.97745 0.96022 1.18802 1.17463 1.11328 0.92636 0.89839 1.25320 0.97825 0.96060 0.97323 1.69907 1.48434 1.16252 1.18849 0.86963 0.76303 0.83552 0.82156 1.21424 1.22998 1.19591 1.23119 1.01248 0.93094 0.86891 0.92652 0.92837 0.92415 0.91241 0.92962 0.92725 0.92265 0.92767 0.90582 0.93478 0.88987 0.89191 0.92033 0.91698 0.90144 0.90681 0.95925 0.94250 0.94607 0.92577 0.90737 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 2 C -0.09 -0.75 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.07 -0.73 1.62 -90.62 -0.15 -0.88 16 5 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 6 C -0.15 -1.74 8.58 37.16 0.32 -1.42 16 7 C -0.13 -1.42 4.15 -27.88 -0.12 -1.54 16 8 C 0.52 7.93 7.56 -10.98 -0.08 7.85 16 9 O -0.54 -10.22 14.22 5.56 0.08 -10.14 16 10 N -0.62 -9.41 3.33 -170.51 -0.57 -9.98 16 11 C 0.10 1.25 6.49 -3.06 -0.02 1.23 16 12 C -0.15 -2.17 6.50 -24.90 -0.16 -2.33 16 13 C 0.17 3.22 3.53 -65.77 -0.23 2.99 16 14 H 0.09 1.68 7.96 -51.92 -0.41 1.27 16 15 N -0.59 -13.65 2.62 -171.02 -0.45 -14.10 16 16 C 0.11 2.32 8.33 59.84 0.50 2.82 16 17 C -0.27 -7.49 9.89 -15.06 -0.15 -7.64 16 18 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 19 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 20 N -0.89 -26.96 13.97 55.49 0.78 -26.19 16 21 Si 0.88 22.31 25.07 -169.99 -4.26 18.05 16 22 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 23 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.08 1.50 6.46 -2.52 -0.02 1.48 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 34 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.83 6.17 -51.93 -0.32 0.51 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.92 2.55 -51.93 -0.13 0.79 16 44 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 47 H 0.06 1.21 6.43 -51.93 -0.33 0.88 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -31.32 352.18 -7.15 -38.47 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.27 Total: -2.37 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 0.23 Total: 0.94 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.24 Total: -50.26 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.26 Total: 18.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.32 -7.15 -38.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189328524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.229 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds