Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47095 * 2 1 4 4 C 1.52993 * 109.47217 * 120.00284 * 2 1 3 5 5 H 1.09004 * 109.47183 * 299.99726 * 4 2 1 6 6 C 1.53001 * 109.47272 * 60.00062 * 4 2 1 7 7 C 1.52999 * 109.47217 * 180.02562 * 4 2 1 8 8 C 1.50706 * 109.47450 * 174.99883 * 7 4 2 9 9 O 1.21283 * 119.99463 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00157 * 179.97438 * 8 7 4 11 11 C 1.47022 * 125.64791 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.26926 * 181.02266 * 11 10 8 13 13 C 1.55158 * 102.94168 * 22.19313 * 12 11 10 14 14 H 1.09001 * 111.00161 * 82.57277 * 13 12 11 15 15 N 1.46497 * 111.00118 * 206.38475 * 13 12 11 16 16 C 1.46496 * 120.00165 * 58.54609 * 15 13 12 17 17 C 1.36941 * 119.99880 * 238.54647 * 15 13 12 18 18 H 1.07995 * 119.99869 * 23.30194 * 17 15 13 19 19 C 1.38811 * 119.99647 * 203.29671 * 17 15 13 20 20 N 1.31614 * 120.00534 * 13.96780 * 19 17 15 21 21 Si 1.86804 * 119.99851 * 193.96032 * 19 17 15 22 22 H 1.48503 * 109.46811 * 90.00232 * 21 19 17 23 23 H 1.48490 * 109.47522 * 210.00446 * 21 19 17 24 24 H 1.48503 * 109.47293 * 330.00653 * 21 19 17 25 25 C 1.47420 * 125.64489 * 179.71621 * 10 8 7 26 26 H 1.09004 * 109.46820 * 299.99769 * 1 2 3 27 27 H 1.09001 * 109.47516 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46820 * 240.00231 * 2 1 3 30 30 H 1.09001 * 109.47776 * 300.00255 * 3 2 1 31 31 H 1.08998 * 109.47354 * 60.00015 * 3 2 1 32 32 H 1.09000 * 109.47290 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47288 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.46659 * 299.99766 * 6 4 2 35 35 H 1.08990 * 109.47221 * 60.00032 * 6 4 2 36 36 H 1.08997 * 109.47066 * 54.99730 * 7 4 2 37 37 H 1.09001 * 109.46961 * 294.99651 * 7 4 2 38 38 H 1.09003 * 109.88149 * 300.44302 * 11 10 8 39 39 H 1.08998 * 109.88281 * 61.44910 * 11 10 8 40 40 H 1.08999 * 110.71821 * 140.55889 * 12 11 10 41 41 H 1.08997 * 110.72124 * 263.64987 * 12 11 10 42 42 H 1.09004 * 109.46859 * 95.16638 * 16 15 13 43 43 H 1.09002 * 109.47354 * 215.16595 * 16 15 13 44 44 H 1.08995 * 109.47276 * 335.16730 * 16 15 13 45 45 H 0.96996 * 120.00859 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.36612 * 274.74342 * 25 10 8 47 47 H 1.09000 * 110.36623 * 37.07313 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 3.5700 -0.7207 1.2495 8 6 4.0724 -1.3212 2.5372 9 8 3.2842 -1.7108 3.3726 10 7 5.3974 -1.4253 2.7604 11 6 6.4582 -0.9946 1.8380 12 6 7.8090 -1.3338 2.5027 13 6 7.4292 -2.4499 3.5115 14 1 7.3809 -3.4213 3.0195 15 7 8.3659 -2.4807 4.6375 16 6 8.5453 -1.2914 5.4739 17 6 9.0738 -3.6213 4.9082 18 1 9.2468 -4.3474 4.1277 19 6 9.5691 -3.8439 6.1857 20 7 9.1381 -3.1170 7.1946 21 14 10.8472 -5.1756 6.4729 22 1 12.2067 -4.5991 6.3153 23 1 10.6961 -5.7188 7.8466 24 1 10.6551 -6.2676 5.4849 25 6 6.0232 -1.9841 3.9726 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.8930 -2.6775 2.1393 34 1 0.4400 -2.1637 1.2492 35 1 1.8933 -2.6776 0.3592 36 1 3.9329 0.3032 1.1601 37 1 3.9337 -1.3099 0.4076 38 1 6.3661 -1.5282 0.8920 39 1 6.3863 0.0794 1.6660 40 1 8.5192 -1.7065 1.7646 41 1 8.2135 -0.4639 3.0200 42 1 7.8999 -1.3624 6.3495 43 1 9.5853 -1.2255 5.7935 44 1 8.2841 -0.4017 4.9011 45 1 9.4839 -3.2728 8.0874 46 1 6.1086 -1.2178 4.7430 47 1 5.4454 -2.8316 4.3415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189328525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -30.561622 kcal Electronic energy + Delta-G solvation = -23099.334331 eV Core-core repulsion = 19896.174965 eV Total energy + Delta-G solvation = -3203.159366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95494 -38.04009 -36.79113 -34.78537 -31.88554 -31.40857 -29.82141 -28.90697 -27.76722 -26.30129 -26.02852 -23.76575 -22.65052 -22.24327 -19.78511 -19.28985 -18.77996 -17.05910 -16.84692 -16.01988 -15.32543 -15.19702 -14.60708 -14.46376 -14.22319 -13.69978 -13.36590 -13.34202 -13.22528 -12.63268 -12.52755 -12.42468 -12.36391 -12.01522 -11.95297 -11.88964 -11.62713 -11.46960 -11.20049 -10.91980 -10.83510 -10.71285 -10.56616 -10.52660 -10.51209 -10.45501 -10.26894 -9.89724 -9.83472 -9.40823 -8.60518 -8.25850 -6.81346 -5.77382 -3.25494 2.91120 3.28409 3.36736 3.43186 3.44436 4.44778 4.53864 4.63026 4.70695 4.91385 5.00911 5.02018 5.23374 5.32207 5.33833 5.39974 5.44181 5.47779 5.51001 5.60528 5.62260 5.66470 5.74083 5.77387 5.82338 5.88571 5.92331 5.94632 6.02056 6.05447 6.17417 6.31335 6.37008 6.39984 6.47369 6.58761 6.65306 6.77088 6.88184 7.30692 7.68578 7.76728 7.88501 8.33833 8.47793 9.17286 9.79788 10.28804 11.26914 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.003204 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.743455 B = 8737.883271 C = 8961.466894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.135 4.135 8 C 0.522 3.478 9 O -0.544 6.544 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.262 4.262 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.087 3.913 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.042 0.958 44 H 0.002 0.998 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 8.017 -15.727 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.089 4.089 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.174 4.174 8 C 0.311 3.689 9 O -0.422 6.422 10 N -0.350 5.350 11 C -0.019 4.019 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.014 3.986 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.037 4.037 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.638 7.798 -15.072 20.577 hybrid contribution 0.783 -0.581 0.250 1.006 sum -10.855 7.217 -14.822 19.739 Atomic orbital electron populations 1.21879 0.95226 1.01940 1.01478 1.21167 0.95874 0.96003 0.98082 1.21931 1.01166 0.96114 1.01672 1.20929 0.92683 0.97213 0.98052 0.90469 1.22002 1.00695 0.95825 1.02655 1.21806 0.97351 1.02259 0.96020 1.20334 0.80703 0.79050 0.88801 1.90656 1.54217 1.49835 1.47524 1.48605 1.04778 1.61274 1.20390 1.22001 0.88047 0.98817 0.93004 1.23212 0.94564 1.01759 0.99894 1.21502 0.87060 0.96000 0.89200 0.90436 1.43855 1.44198 1.10934 1.31493 1.20810 1.00418 0.84849 0.92504 1.19217 1.27315 0.98820 0.93797 0.91206 1.25065 1.00476 0.98598 0.95249 1.70066 1.43515 1.42048 0.99065 0.86220 0.81527 0.81347 0.77214 1.21426 1.21715 1.20415 1.23098 0.95650 0.98396 0.86586 0.92702 0.93005 0.92287 0.91289 0.92878 0.92626 0.92404 0.90543 0.92803 0.93538 0.89024 0.89314 0.91981 0.92231 0.90656 0.90555 0.94869 0.93963 0.97922 0.93591 0.91553 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 2 C -0.09 -0.79 2.51 -90.63 -0.23 -1.01 16 3 C -0.15 -1.17 8.85 37.15 0.33 -0.84 16 4 C -0.07 -0.76 1.62 -90.62 -0.15 -0.91 16 5 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 6 C -0.15 -1.80 8.58 37.16 0.32 -1.48 16 7 C -0.13 -1.51 4.15 -27.88 -0.12 -1.62 16 8 C 0.52 8.29 7.57 -10.98 -0.08 8.21 16 9 O -0.54 -10.60 14.22 5.55 0.08 -10.52 16 10 N -0.62 -9.95 3.32 -170.38 -0.57 -10.51 16 11 C 0.10 1.36 6.48 -3.06 -0.02 1.34 16 12 C -0.15 -2.40 6.48 -24.90 -0.16 -2.56 16 13 C 0.17 3.43 3.55 -65.66 -0.23 3.20 16 14 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 15 N -0.58 -14.20 2.96 -170.90 -0.51 -14.70 16 16 C 0.16 3.79 7.60 59.84 0.45 4.25 16 17 C -0.26 -7.04 9.60 -15.06 -0.14 -7.18 16 18 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.06 16 20 N -0.90 -26.08 10.78 55.49 0.60 -25.48 16 21 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 C 0.09 1.70 6.47 -2.41 -0.02 1.69 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 33 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 34 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.89 6.17 -51.93 -0.32 0.57 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.24 6.38 -51.93 -0.33 0.91 16 42 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 43 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 44 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.39 7.06 -51.93 -0.37 1.03 16 47 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -30.37 356.90 -8.28 -38.66 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.44 Total: -1.65 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.19 Total: 2.29 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.47 Total: -50.70 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.37 -8.28 -38.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189328525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.095 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds