Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 C 1.53007 * 109.46917 * 119.99988 * 2 1 3 5 5 H 1.09000 * 109.47096 * 299.99735 * 4 2 1 6 6 C 1.53001 * 109.46928 * 60.00298 * 4 2 1 7 7 C 1.53003 * 109.46731 * 179.97438 * 4 2 1 8 8 C 1.50705 * 109.46807 * 175.00293 * 7 4 2 9 9 O 1.21288 * 119.99749 * 359.97438 * 8 7 4 10 10 N 1.34778 * 120.00207 * 179.72636 * 8 7 4 11 11 C 1.47020 * 125.64368 * 359.96403 * 10 8 7 12 12 C 1.54331 * 107.26165 * 178.85313 * 11 10 8 13 13 C 1.55152 * 103.02227 * 338.13661 * 12 11 10 14 14 H 1.08997 * 111.00786 * 277.23544 * 13 12 11 15 15 N 1.46503 * 111.03716 * 153.39610 * 13 12 11 16 16 C 1.46502 * 119.99994 * 307.78697 * 15 13 12 17 17 C 1.36935 * 119.99966 * 127.78890 * 15 13 12 18 18 H 1.08006 * 120.00317 * 23.26441 * 17 15 13 19 19 C 1.38809 * 120.00210 * 203.26161 * 17 15 13 20 20 N 1.31620 * 120.00229 * 13.81597 * 19 17 15 21 21 Si 1.86802 * 120.00250 * 193.81594 * 19 17 15 22 22 H 1.48499 * 109.47187 * 90.00137 * 21 19 17 23 23 H 1.48499 * 109.46994 * 209.99812 * 21 19 17 24 24 H 1.48496 * 109.46913 * 330.00083 * 21 19 17 25 25 C 1.47418 * 125.64970 * 180.27197 * 10 8 7 26 26 H 1.09000 * 109.47021 * 300.00231 * 1 2 3 27 27 H 1.09004 * 109.46755 * 60.00094 * 1 2 3 28 28 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47401 * 239.99998 * 2 1 3 30 30 H 1.09000 * 109.47198 * 59.99877 * 3 2 1 31 31 H 1.08998 * 109.47169 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47569 * 299.99879 * 3 2 1 33 33 H 1.08992 * 109.47376 * 59.99822 * 6 4 2 34 34 H 1.09004 * 109.46943 * 180.02562 * 6 4 2 35 35 H 1.09007 * 109.46910 * 299.99766 * 6 4 2 36 36 H 1.08990 * 109.47225 * 55.00141 * 7 4 2 37 37 H 1.09004 * 109.47362 * 294.99315 * 7 4 2 38 38 H 1.09001 * 109.88274 * 298.39490 * 11 10 8 39 39 H 1.08992 * 109.88404 * 59.56333 * 11 10 8 40 40 H 1.08999 * 110.84840 * 219.66816 * 12 11 10 41 41 H 1.09000 * 110.51898 * 96.44978 * 12 11 10 42 42 H 1.08993 * 109.47191 * 95.16391 * 16 15 13 43 43 H 1.09007 * 109.46737 * 215.16028 * 16 15 13 44 44 H 1.08996 * 109.47529 * 335.15937 * 16 15 13 45 45 H 0.96998 * 120.00707 * 179.97438 * 20 19 17 46 46 H 1.09000 * 110.36709 * 322.93063 * 25 10 8 47 47 H 1.09007 * 110.36506 * 85.25258 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 6 3.5699 -0.7218 1.2490 8 6 4.0723 -1.3224 2.5367 9 8 3.2841 -1.7112 3.3725 10 7 5.3974 -1.4320 2.7573 11 6 6.4580 -1.0087 1.8314 12 6 7.8089 -1.3018 2.5177 13 6 7.4317 -1.3598 4.0215 14 1 7.3878 -0.3596 4.4523 15 7 8.3658 -2.2084 4.7656 16 6 8.6432 -3.5713 4.3053 17 6 8.9795 -1.7278 5.8914 18 1 8.5321 -0.9158 6.4456 19 6 10.1767 -2.2840 6.3206 20 7 10.8603 -3.0732 5.5192 21 14 10.8176 -1.9126 8.0354 22 1 10.2933 -2.9227 8.9894 23 1 12.3018 -1.9602 8.0302 24 1 10.3672 -0.5596 8.4499 25 6 6.0232 -2.0020 3.9643 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.8932 -2.6776 0.3593 34 1 1.8929 -2.6775 2.1395 35 1 0.4399 -2.1638 1.2492 36 1 3.9336 0.3017 1.1592 37 1 3.9329 -1.3116 0.4072 38 1 6.3834 -1.5706 0.9004 39 1 6.3704 0.0589 1.6304 40 1 8.5218 -0.4990 2.3296 41 1 8.2077 -2.2594 2.1829 42 1 9.5435 -3.5711 3.6909 43 1 8.7915 -4.2226 5.1667 44 1 7.8012 -3.9343 3.7160 45 1 11.6971 -3.4617 5.8189 46 1 5.4485 -1.7357 4.8513 47 1 6.1035 -3.0854 3.8743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189328526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -30.834680 kcal Electronic energy + Delta-G solvation = -23073.002770 eV Core-core repulsion = 19869.831563 eV Total energy + Delta-G solvation = -3203.171207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98733 -38.05826 -36.81210 -34.79562 -31.89975 -31.41252 -29.83465 -28.92383 -27.79443 -26.31896 -26.02525 -23.78326 -22.66950 -22.22521 -19.78977 -19.31107 -18.81184 -17.05116 -16.89088 -15.94324 -15.58062 -14.94675 -14.75670 -14.50884 -14.10751 -13.73088 -13.45048 -13.35458 -13.24847 -12.68566 -12.51675 -12.49964 -12.26919 -12.07893 -11.96831 -11.89000 -11.67359 -11.31364 -11.21627 -10.95109 -10.82890 -10.74324 -10.57458 -10.52767 -10.50997 -10.48654 -10.24860 -9.90480 -9.86747 -9.43894 -8.60756 -8.29779 -6.81858 -5.77954 -3.25617 2.87266 3.25609 3.36755 3.43644 3.44567 4.45126 4.51912 4.61471 4.69134 4.89930 4.99569 5.03475 5.24976 5.29036 5.36072 5.39334 5.43988 5.46463 5.52843 5.57378 5.61137 5.64837 5.73079 5.75822 5.78768 5.87646 5.92310 5.93399 6.02484 6.03989 6.15888 6.30581 6.35181 6.39125 6.45108 6.57441 6.65463 6.75489 6.87553 7.31613 7.67108 7.76762 7.84755 8.33344 8.43798 9.17193 9.79596 10.28365 11.26525 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038344 B = 0.003137 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.056074 B = 8924.437887 C = 8994.988296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.135 4.135 8 C 0.523 3.477 9 O -0.546 6.546 10 N -0.615 5.615 11 C 0.103 3.897 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.261 4.261 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.085 3.915 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.002 0.998 45 H 0.253 0.747 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.738 5.790 -13.432 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.089 4.089 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.175 4.175 8 C 0.312 3.688 9 O -0.424 6.424 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.015 3.985 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.040 4.040 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.032 5.481 -12.943 20.580 hybrid contribution 0.618 0.120 0.751 0.980 sum -14.414 5.601 -12.192 19.692 Atomic orbital electron populations 1.21878 0.95226 1.01919 1.01497 1.21170 0.95870 0.96037 0.98061 1.21932 1.01204 0.96078 1.01691 1.20931 0.92666 0.97178 0.98087 0.90442 1.22004 1.00706 0.95859 1.02600 1.21805 0.97341 1.02367 0.95937 1.20330 0.80634 0.78984 0.88825 1.90649 1.54246 1.50138 1.47381 1.48558 1.04834 1.61024 1.20480 1.22045 0.88145 0.99065 0.92791 1.23209 0.94385 1.02833 0.98703 1.21410 0.87765 0.94544 0.90026 0.90444 1.43810 1.48472 1.10058 1.28200 1.20807 0.95329 0.84644 0.97754 1.19226 1.01731 1.17786 1.00267 0.91249 1.25028 0.95737 1.00043 0.98559 1.70065 1.14994 1.35595 1.34229 0.86226 0.77766 0.78127 0.84241 1.21409 1.21729 1.20412 1.22992 0.95851 0.98540 0.86593 0.92704 0.92982 0.92308 0.91290 0.92618 0.92367 0.92857 0.93552 0.90600 0.92794 0.88920 0.89315 0.92149 0.91954 0.90499 0.90561 0.94774 0.94013 0.98002 0.93654 0.91090 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.15 0.33 -0.82 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.16 8.85 37.16 0.33 -0.83 16 4 C -0.07 -0.74 1.62 -90.61 -0.15 -0.89 16 5 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 6 C -0.15 -1.74 8.58 37.16 0.32 -1.42 16 7 C -0.13 -1.48 4.15 -27.88 -0.12 -1.60 16 8 C 0.52 8.08 7.57 -10.98 -0.08 8.00 16 9 O -0.55 -10.26 14.22 5.55 0.08 -10.18 16 10 N -0.61 -9.71 3.33 -170.52 -0.57 -10.27 16 11 C 0.10 1.36 6.49 -3.06 -0.02 1.34 16 12 C -0.15 -2.48 6.50 -24.90 -0.16 -2.64 16 13 C 0.17 3.43 3.53 -65.78 -0.23 3.20 16 14 H 0.08 1.56 7.96 -51.93 -0.41 1.14 16 15 N -0.59 -14.22 2.96 -171.03 -0.51 -14.72 16 16 C 0.16 3.80 7.57 59.85 0.45 4.25 16 17 C -0.26 -7.02 9.60 -15.06 -0.14 -7.16 16 18 H 0.07 1.84 7.87 -52.48 -0.41 1.42 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -25.80 10.77 55.49 0.60 -25.21 16 21 Si 0.91 21.60 29.58 -169.99 -5.03 16.58 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.08 1.58 6.47 -2.53 -0.02 1.56 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 35 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.09 0.89 6.17 -51.93 -0.32 0.57 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 42 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 43 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 44 H 0.00 0.03 6.38 -51.93 -0.33 -0.30 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 47 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -30.01 356.89 -8.29 -38.30 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.44 Total: -1.92 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 0.19 Total: 2.04 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.48 Total: -50.20 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.01 -8.29 -38.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189328526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.463 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds