Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 C 1.53001 * 109.47225 * 120.00022 * 2 1 3 5 5 C 1.52996 * 109.47210 * 66.43876 * 4 2 1 6 6 H 1.09007 * 109.46785 * 305.93538 * 5 4 2 7 7 C 1.53000 * 109.47076 * 65.93367 * 5 4 2 8 8 C 1.50698 * 109.47275 * 185.93709 * 5 4 2 9 9 O 1.21277 * 120.00122 * 350.52668 * 8 5 4 10 10 N 1.34772 * 120.00182 * 170.52809 * 8 5 4 11 11 C 1.47022 * 125.64852 * 355.61375 * 10 8 5 12 12 C 1.54327 * 107.27168 * 181.03591 * 11 10 8 13 13 C 1.55441 * 102.96943 * 22.19196 * 12 11 10 14 14 H 1.09000 * 111.01353 * 82.52344 * 13 12 11 15 15 N 1.46495 * 111.11673 * 206.46362 * 13 12 11 16 16 C 1.46501 * 120.00194 * 52.10408 * 15 13 12 17 17 C 1.36944 * 120.00243 * 232.09862 * 15 13 12 18 18 H 1.07998 * 119.99400 * 23.08231 * 17 15 13 19 19 C 1.38812 * 120.00216 * 203.07697 * 17 15 13 20 20 N 1.31623 * 119.99802 * 10.41095 * 19 17 15 21 21 Si 1.86798 * 119.99988 * 190.41123 * 19 17 15 22 22 H 1.48501 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46938 * 120.00174 * 21 19 17 24 24 H 1.48497 * 109.47130 * 240.00169 * 21 19 17 25 25 C 1.47429 * 125.65081 * 175.58684 * 10 8 5 26 26 H 1.09001 * 109.47016 * 300.00117 * 1 2 3 27 27 H 1.09001 * 109.47031 * 59.99576 * 1 2 3 28 28 H 1.08991 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47016 * 239.99883 * 2 1 3 30 30 H 1.08999 * 109.47572 * 64.76593 * 3 2 1 31 31 H 1.09002 * 109.46977 * 184.76617 * 3 2 1 32 32 H 1.09011 * 109.47112 * 304.76315 * 3 2 1 33 33 H 1.09001 * 109.46726 * 306.43709 * 4 2 1 34 34 H 1.09000 * 109.46929 * 186.44232 * 4 2 1 35 35 H 1.08998 * 109.46931 * 172.56333 * 7 5 4 36 36 H 1.09002 * 109.47378 * 292.55899 * 7 5 4 37 37 H 1.08996 * 109.47230 * 52.56457 * 7 5 4 38 38 H 1.09004 * 109.88008 * 300.45281 * 11 10 8 39 39 H 1.09000 * 109.88977 * 61.61812 * 11 10 8 40 40 H 1.09007 * 110.71491 * 140.55578 * 12 11 10 41 41 H 1.08999 * 110.72197 * 263.64533 * 12 11 10 42 42 H 1.09002 * 109.47393 * 94.88305 * 16 15 13 43 43 H 1.09000 * 109.47464 * 214.88880 * 16 15 13 44 44 H 1.09002 * 109.46675 * 334.88352 * 16 15 13 45 45 H 0.96996 * 119.99525 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36464 * 274.73009 * 25 10 8 47 47 H 1.08993 * 110.36525 * 36.94425 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6665 -2.2028 1.1710 6 1 0.5933 -2.2986 1.0057 7 6 2.4214 -2.8587 0.0131 8 6 2.0384 -2.8836 2.4630 9 8 2.7033 -2.2951 3.2890 10 7 1.6323 -4.1466 2.7005 11 6 0.7509 -4.9408 1.8322 12 6 0.5421 -6.3073 2.5183 13 6 0.8591 -6.0013 4.0089 14 1 -0.0062 -5.5698 4.5120 15 7 1.3248 -7.2022 4.7068 16 6 2.4273 -7.9911 4.1513 17 6 0.7296 -7.5875 5.8784 18 1 -0.2770 -7.2674 6.1033 19 6 1.4201 -8.3894 6.7767 20 7 2.7063 -8.6112 6.6070 21 14 0.5238 -9.1538 8.2265 22 1 -0.9058 -8.7536 8.1914 23 1 0.6253 -10.6332 8.1471 24 1 1.1393 -8.6826 9.4932 25 6 1.9987 -4.9607 3.8737 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.7481 1.9311 0.9296 31 1 3.1267 1.4436 -0.0854 32 1 1.6086 1.9804 -0.8443 33 1 1.5857 -0.2782 2.1354 34 1 3.1239 -0.6224 1.3087 35 1 2.2593 -3.9363 0.0377 36 1 2.0559 -2.4579 -0.9324 37 1 3.4868 -2.6493 0.1090 38 1 -0.2074 -4.4348 1.7144 39 1 1.2196 -5.0828 0.8584 40 1 -0.4890 -6.6423 2.4044 41 1 1.2335 -7.0492 2.1187 42 1 3.3656 -7.6761 4.6079 43 1 2.2588 -9.0478 4.3592 44 1 2.4777 -7.8364 3.0735 45 1 3.1888 -9.1713 7.2349 46 1 2.9519 -5.4618 3.7049 47 1 2.0513 -4.3375 4.7663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193088902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -30.198916 kcal Electronic energy + Delta-G solvation = -23211.681785 eV Core-core repulsion = 20008.538147 eV Total energy + Delta-G solvation = -3203.143638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03535 -37.83349 -36.65842 -34.81281 -32.87577 -31.45165 -29.68242 -27.94289 -27.37477 -26.74820 -26.06301 -24.47705 -22.62213 -22.11267 -19.84888 -19.28431 -18.66448 -17.07213 -16.94923 -15.95388 -15.55121 -15.09555 -14.69472 -14.43256 -14.01955 -13.74910 -13.44569 -13.24117 -13.19707 -12.87236 -12.52212 -12.39121 -12.32698 -12.22476 -12.00207 -11.94001 -11.57691 -11.47564 -11.30561 -10.91198 -10.83701 -10.80243 -10.63528 -10.62659 -10.51759 -10.39474 -10.23295 -9.89234 -9.79766 -9.40735 -8.60922 -8.25449 -6.81540 -5.76877 -3.25110 2.90617 3.28023 3.36363 3.43371 3.45265 4.44247 4.51529 4.58418 4.71643 4.88569 5.00186 5.03060 5.10736 5.18967 5.29890 5.34687 5.42535 5.45248 5.47688 5.57509 5.62007 5.68280 5.71350 5.75394 5.80887 5.85738 5.89607 5.94968 5.99896 6.03046 6.08788 6.25239 6.29970 6.30940 6.40424 6.58028 6.66831 6.80396 6.88575 7.34731 7.70601 7.77783 7.88983 8.34278 8.47133 9.18389 9.80116 10.28702 11.27559 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035877 B = 0.003291 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.256791 B = 8506.628260 C = 8606.794397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.146 4.146 8 C 0.526 3.474 9 O -0.547 6.547 10 N -0.614 5.614 11 C 0.103 3.897 12 C -0.155 4.155 13 C 0.174 3.826 14 H 0.077 0.923 15 N -0.585 5.585 16 C 0.160 3.840 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.085 3.915 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.002 0.998 45 H 0.253 0.747 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 12.672 -16.355 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.133 4.133 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.203 4.203 8 C 0.315 3.685 9 O -0.425 6.425 10 N -0.348 5.348 11 C -0.021 4.021 12 C -0.195 4.195 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.306 5.306 16 C 0.015 3.985 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.738 3.262 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 C -0.040 4.040 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.484 12.907 -15.792 20.691 hybrid contribution -0.336 -0.519 0.825 1.031 sum -3.820 12.388 -14.966 19.800 Atomic orbital electron populations 1.21913 0.95393 1.01797 1.01640 1.21186 0.95822 0.96207 0.98532 1.21827 1.00952 0.95964 1.01663 1.21475 1.01880 0.92223 0.97686 1.21319 1.01985 0.96270 0.93322 0.88878 1.21851 1.00604 1.00960 0.96891 1.20318 0.79677 0.80227 0.88316 1.90680 1.39975 1.63979 1.47860 1.48556 1.48785 1.12993 1.24451 1.22093 0.93404 0.92680 0.93882 1.23242 1.02383 0.94907 0.98935 1.21490 0.94493 0.87123 0.90611 0.90508 1.43858 1.39350 1.23069 1.24291 1.20842 0.90856 0.95598 0.91154 1.19276 0.96198 1.28450 0.94980 0.91151 1.25083 0.95233 1.01324 0.97828 1.70078 1.06550 1.40850 1.37526 0.86135 0.78973 0.78798 0.82326 1.20264 1.21583 1.21640 1.23125 1.00490 0.93112 0.87226 0.92649 0.92900 0.92495 0.90964 0.92652 0.92718 0.92866 0.91326 0.91179 0.91785 0.91509 0.92106 0.92011 0.91844 0.90645 0.90316 0.95074 0.93606 0.97986 0.93667 0.91614 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.98 37.16 0.33 -0.84 16 2 C -0.10 -0.84 2.81 -90.62 -0.25 -1.09 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.09 -1.05 3.43 -26.73 -0.09 -1.14 16 5 C -0.11 -1.24 2.00 -91.77 -0.18 -1.43 16 6 H 0.09 0.94 6.17 -51.93 -0.32 0.62 16 7 C -0.15 -1.42 8.72 37.16 0.32 -1.10 16 8 C 0.53 8.62 7.09 -10.99 -0.08 8.55 16 9 O -0.55 -11.18 16.25 5.56 0.09 -11.09 16 10 N -0.61 -10.05 3.33 -170.52 -0.57 -10.62 16 11 C 0.10 1.35 6.12 -3.06 -0.02 1.33 16 12 C -0.15 -2.40 6.48 -24.74 -0.16 -2.56 16 13 C 0.17 3.45 3.56 -65.63 -0.23 3.22 16 14 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 15 N -0.59 -14.24 2.96 -170.86 -0.51 -14.75 16 16 C 0.16 3.82 7.86 59.85 0.47 4.29 16 17 C -0.26 -6.99 9.63 -15.06 -0.14 -7.14 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C 0.00 0.11 5.15 -17.43 -0.09 0.02 16 20 N -0.91 -26.14 10.57 55.49 0.59 -25.56 16 21 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 C 0.08 1.68 6.52 -2.53 -0.02 1.67 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 29 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.06 0.63 5.60 -51.93 -0.29 0.34 16 36 H 0.07 0.51 6.82 -51.93 -0.35 0.15 16 37 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 38 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.06 0.71 5.95 -51.93 -0.31 0.40 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.27 6.00 -51.93 -0.31 0.96 16 42 H 0.03 0.82 7.36 -51.93 -0.38 0.44 16 43 H 0.05 1.18 7.26 -51.93 -0.38 0.80 16 44 H 0.00 0.04 5.97 -51.93 -0.31 -0.27 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 46 H 0.07 1.40 7.31 -51.93 -0.38 1.02 16 47 H 0.07 1.57 7.99 -51.93 -0.42 1.15 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -30.85 356.32 -8.16 -39.01 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.30 Total: -1.94 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 0.20 Total: 2.96 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.49 Total: -50.93 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.85 -8.16 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193088902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.808 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds