Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47148 * 120.00498 * 2 1 3 5 5 C 1.53001 * 109.47474 * 64.85672 * 4 2 1 6 6 H 1.08992 * 109.47270 * 305.47677 * 5 4 2 7 7 C 1.53009 * 109.46612 * 65.47366 * 5 4 2 8 8 C 1.50697 * 109.47093 * 185.47058 * 5 4 2 9 9 O 1.21280 * 120.00375 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99671 * 180.02562 * 8 5 4 11 11 C 1.47428 * 125.64867 * 359.96415 * 10 8 5 12 12 C 1.54908 * 104.83250 * 204.16161 * 11 10 8 13 13 C 1.55163 * 101.58319 * 322.99128 * 12 11 10 14 14 H 1.08998 * 110.86783 * 277.07085 * 13 12 11 15 15 N 1.46494 * 110.72507 * 153.86402 * 13 12 11 16 16 C 1.46503 * 119.99900 * 306.47786 * 15 13 12 17 17 C 1.36934 * 120.00084 * 126.47464 * 15 13 12 18 18 H 1.07999 * 120.00090 * 341.80164 * 17 15 13 19 19 C 1.38810 * 119.99872 * 162.07233 * 17 15 13 20 20 N 1.31624 * 120.00130 * 343.26239 * 19 17 15 21 21 Si 1.86798 * 120.00150 * 163.26375 * 19 17 15 22 22 H 1.48500 * 109.47372 * 89.99711 * 21 19 17 23 23 H 1.48500 * 109.47610 * 209.99773 * 21 19 17 24 24 H 1.48497 * 109.47187 * 329.99839 * 21 19 17 25 25 C 1.47028 * 125.64801 * 179.97438 * 10 8 5 26 26 H 1.08998 * 109.47333 * 299.99709 * 1 2 3 27 27 H 1.08999 * 109.47060 * 59.99970 * 1 2 3 28 28 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46878 * 240.00391 * 2 1 3 30 30 H 1.08996 * 109.47254 * 184.19065 * 3 2 1 31 31 H 1.09003 * 109.47620 * 304.19449 * 3 2 1 32 32 H 1.09005 * 109.46928 * 64.19449 * 3 2 1 33 33 H 1.09004 * 109.47128 * 304.85755 * 4 2 1 34 34 H 1.08997 * 109.47393 * 184.86209 * 4 2 1 35 35 H 1.09003 * 109.47075 * 306.44708 * 7 5 4 36 36 H 1.08997 * 109.47233 * 66.45115 * 7 5 4 37 37 H 1.09004 * 109.46530 * 186.44936 * 7 5 4 38 38 H 1.08997 * 110.36765 * 322.99827 * 11 10 8 39 39 H 1.08997 * 110.36983 * 85.21458 * 11 10 8 40 40 H 1.09000 * 111.00793 * 204.91952 * 12 11 10 41 41 H 1.08996 * 111.00726 * 81.05916 * 12 11 10 42 42 H 1.08999 * 109.47029 * 264.85542 * 16 15 13 43 43 H 1.09004 * 109.47331 * 24.86082 * 16 15 13 44 44 H 1.09006 * 109.47305 * 144.85708 * 16 15 13 45 45 H 0.96999 * 120.00085 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.87885 * 59.49366 * 25 10 8 47 47 H 1.08998 * 110.01007 * 298.39983 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6322 -2.1948 1.1895 6 1 0.5541 -2.2679 1.0471 7 6 2.3482 -2.8752 0.0210 8 6 2.0160 -2.8748 2.4784 9 8 2.5616 -2.2431 3.3583 10 7 1.7530 -4.1850 2.6533 11 6 1.0974 -5.0683 1.6718 12 6 0.4819 -6.2118 2.5163 13 6 1.5631 -6.4066 3.6120 14 1 2.3696 -7.0456 3.2523 15 7 0.9708 -6.9600 4.8322 16 6 -0.1796 -6.2987 5.4531 17 6 1.4924 -8.0954 5.3924 18 1 2.1275 -8.7438 4.8070 19 6 1.2003 -8.4160 6.7110 20 7 0.7118 -7.4986 7.5187 21 14 1.5004 -10.1493 7.3394 22 1 2.8794 -10.2475 7.8815 23 1 0.5232 -10.4631 8.4126 24 1 1.3373 -11.1155 6.2236 25 6 2.0723 -4.9701 3.8547 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1273 1.4434 -0.0751 31 1 1.6166 1.9776 -0.8500 32 1 1.7393 1.9341 0.9252 33 1 1.6073 -0.2603 2.1371 34 1 3.1264 -0.6465 1.2938 35 1 2.1622 -2.3146 -0.8952 36 1 3.4198 -2.9035 0.2183 37 1 1.9727 -3.8921 -0.0927 38 1 0.3157 -4.5280 1.1379 39 1 1.8304 -5.4654 0.9696 40 1 0.3620 -7.1166 1.9205 41 1 -0.4679 -5.9060 2.9549 42 1 0.1674 -5.6284 6.2394 43 1 -0.7198 -5.7258 4.6993 44 1 -0.8425 -7.0500 5.8824 45 1 0.5081 -7.7225 8.4402 46 1 1.5707 -4.5409 4.7221 47 1 3.1500 -4.9811 4.0176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193088903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = -27.346396 kcal Electronic energy + Delta-G solvation = -23277.892728 eV Core-core repulsion = 20074.872784 eV Total energy + Delta-G solvation = -3203.019944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.05805 -37.84880 -36.67147 -34.82490 -32.88416 -31.42823 -29.68117 -27.95591 -27.36557 -26.70403 -26.05612 -24.50658 -22.62734 -22.15027 -19.83607 -19.21860 -18.77743 -17.07964 -16.83949 -15.82544 -15.48763 -15.47444 -14.76754 -14.17995 -14.03588 -13.69136 -13.59050 -13.29856 -13.12592 -12.77135 -12.57526 -12.47748 -12.24250 -12.11416 -12.05477 -11.79886 -11.63903 -11.49362 -11.23593 -10.93105 -10.81605 -10.76654 -10.63314 -10.59280 -10.55765 -10.44079 -10.28569 -9.88250 -9.80882 -9.40406 -8.56335 -8.24544 -6.87203 -5.76870 -3.19371 2.92669 3.29032 3.37012 3.43795 3.45621 4.45140 4.50788 4.60080 4.71733 4.88960 4.98840 5.03234 5.11985 5.20234 5.26498 5.36638 5.41557 5.45771 5.49904 5.56959 5.61509 5.66996 5.71250 5.78225 5.80659 5.86126 5.88392 5.95445 5.99571 6.00129 6.07212 6.25814 6.32575 6.33986 6.37632 6.56111 6.70207 6.82974 6.87139 7.35308 7.69026 7.78241 7.89124 8.31868 8.48445 9.17661 9.81456 10.28511 11.28252 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039480 B = 0.003309 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.047225 B = 8460.830946 C = 8617.986465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.108 4.108 6 H 0.095 0.905 7 C -0.151 4.151 8 C 0.525 3.475 9 O -0.547 6.547 10 N -0.612 5.612 11 C 0.102 3.898 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.587 5.587 16 C 0.161 3.839 17 C -0.260 4.260 18 H 0.072 0.928 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.085 3.915 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.002 0.998 44 H 0.047 0.953 45 H 0.253 0.747 46 H 0.071 0.929 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 11.101 -17.886 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.133 4.133 5 C -0.129 4.129 6 H 0.113 0.887 7 C -0.208 4.208 8 C 0.313 3.687 9 O -0.425 6.425 10 N -0.346 5.346 11 C -0.021 4.021 12 C -0.195 4.195 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.307 5.307 16 C 0.016 3.984 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.039 4.039 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.021 0.979 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.641 11.469 -17.187 20.673 hybrid contribution 0.138 -0.900 0.540 1.058 sum -0.503 10.569 -16.648 19.726 Atomic orbital electron populations 1.21914 0.95374 1.01824 1.01662 1.21203 0.95863 0.96204 0.98503 1.21823 1.00927 0.95967 1.01683 1.21448 1.01607 0.92375 0.97830 1.21311 1.02067 0.96251 0.93272 0.88682 1.21956 1.00843 1.00990 0.97031 1.20334 0.78868 0.80551 0.88911 1.90684 1.43320 1.63844 1.44639 1.48567 1.59173 1.08311 1.18534 1.22384 0.96058 0.91752 0.91926 1.23365 1.00882 0.96993 0.98229 1.21329 0.93578 0.90872 0.87956 0.90426 1.43971 1.32076 1.28512 1.26143 1.20813 0.88226 0.96016 0.93324 1.19228 1.28270 0.97465 0.94001 0.91030 1.24947 1.01082 0.98016 0.95603 1.70120 1.48425 1.31293 1.05018 0.86252 0.77511 0.84398 0.78326 1.21432 1.21572 1.20533 1.22915 1.00265 0.93526 0.87209 0.92607 0.92909 0.92476 0.90943 0.92741 0.92865 0.92628 0.91083 0.91381 0.91444 0.92280 0.91527 0.91384 0.91548 0.90412 0.90388 0.95289 0.97944 0.93455 0.93638 0.91070 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 2 C -0.10 -0.85 2.79 -90.63 -0.25 -1.10 16 3 C -0.15 -1.16 9.19 37.15 0.34 -0.82 16 4 C -0.09 -1.06 3.50 -26.73 -0.09 -1.16 16 5 C -0.11 -1.25 1.94 -91.77 -0.18 -1.43 16 6 H 0.10 0.99 6.02 -51.93 -0.31 0.68 16 7 C -0.15 -1.42 8.81 37.16 0.33 -1.09 16 8 C 0.53 8.66 7.21 -10.99 -0.08 8.58 16 9 O -0.55 -11.29 16.24 5.56 0.09 -11.20 16 10 N -0.61 -10.02 3.32 -170.51 -0.57 -10.58 16 11 C 0.10 1.31 5.14 -2.53 -0.01 1.30 16 12 C -0.15 -2.40 6.59 -24.58 -0.16 -2.56 16 13 C 0.17 3.40 3.44 -66.09 -0.23 3.17 16 14 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16 15 N -0.59 -14.30 2.94 -171.38 -0.50 -14.81 16 16 C 0.16 3.91 7.81 59.85 0.47 4.38 16 17 C -0.26 -6.99 9.66 -15.06 -0.15 -7.14 16 18 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.00 0.06 5.04 -17.43 -0.09 -0.03 16 20 N -0.90 -26.27 10.63 55.49 0.59 -25.68 16 21 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.09 1.69 6.51 -3.06 -0.02 1.67 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.45 6.45 -51.93 -0.33 0.11 16 29 H 0.07 0.56 6.25 -51.92 -0.32 0.24 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.92 7.94 -51.93 -0.41 0.50 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.51 6.22 -51.93 -0.32 0.18 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.58 5.22 -51.93 -0.27 0.31 16 38 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 39 H 0.07 0.74 7.20 -51.93 -0.37 0.37 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.30 6.05 -51.93 -0.31 0.98 16 42 H 0.03 0.78 7.39 -51.93 -0.38 0.40 16 43 H 0.00 0.05 6.03 -51.93 -0.31 -0.27 16 44 H 0.05 1.24 7.10 -51.93 -0.37 0.87 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.07 1.63 7.13 -51.93 -0.37 1.26 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -31.18 354.22 -8.11 -39.29 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.24 Total: -1.82 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 0.21 Total: 2.91 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.48 Total: -51.07 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.18 -8.11 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193088903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.942 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds