Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46713 * 2 1 4 4 C 1.52996 * 109.47088 * 119.99741 * 2 1 3 5 5 C 1.52994 * 109.47455 * 65.63502 * 4 2 1 6 6 H 1.09002 * 109.46965 * 307.09259 * 5 4 2 7 7 C 1.52998 * 109.47592 * 187.09088 * 5 4 2 8 8 C 1.50706 * 109.46957 * 67.08631 * 5 4 2 9 9 O 1.21278 * 119.99996 * 35.09330 * 8 5 4 10 10 N 1.34778 * 120.00036 * 215.08995 * 8 5 4 11 11 C 1.47027 * 125.64499 * 5.47716 * 10 8 5 12 12 C 1.54338 * 107.26368 * 178.84528 * 11 10 8 13 13 C 1.55156 * 103.01920 * 338.14394 * 12 11 10 14 14 H 1.09000 * 111.04056 * 277.21763 * 13 12 11 15 15 N 1.46504 * 111.00430 * 153.38100 * 13 12 11 16 16 C 1.46499 * 119.99606 * 307.80020 * 15 13 12 17 17 C 1.36932 * 120.00309 * 127.80236 * 15 13 12 18 18 H 1.07999 * 120.00101 * 320.32868 * 17 15 13 19 19 C 1.38811 * 120.00282 * 140.32743 * 17 15 13 20 20 N 1.31619 * 120.00165 * 160.51353 * 19 17 15 21 21 Si 1.86804 * 120.00020 * 340.51738 * 19 17 15 22 22 H 1.48493 * 109.47303 * 93.40376 * 21 19 17 23 23 H 1.48496 * 109.47191 * 213.40474 * 21 19 17 24 24 H 1.48502 * 109.47066 * 333.40111 * 21 19 17 25 25 C 1.47417 * 125.64766 * 185.78441 * 10 8 5 26 26 H 1.08993 * 109.47821 * 301.14149 * 1 2 3 27 27 H 1.09004 * 109.47283 * 61.14984 * 1 2 3 28 28 H 1.09002 * 109.46672 * 181.14246 * 1 2 3 29 29 H 1.08999 * 109.47679 * 240.00075 * 2 1 3 30 30 H 1.09002 * 109.46963 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47059 * 300.00169 * 3 2 1 32 32 H 1.08999 * 109.46987 * 59.99651 * 3 2 1 33 33 H 1.09001 * 109.47185 * 305.62778 * 4 2 1 34 34 H 1.09005 * 109.46783 * 185.63495 * 4 2 1 35 35 H 1.09001 * 109.47421 * 54.52977 * 7 5 4 36 36 H 1.09004 * 109.46730 * 294.53073 * 7 5 4 37 37 H 1.08997 * 109.47287 * 174.53309 * 7 5 4 38 38 H 1.08995 * 109.88571 * 298.39485 * 11 10 8 39 39 H 1.09007 * 109.88249 * 59.56016 * 11 10 8 40 40 H 1.08994 * 110.85097 * 219.67404 * 12 11 10 41 41 H 1.09005 * 110.66339 * 96.52289 * 12 11 10 42 42 H 1.09001 * 109.46972 * 88.49564 * 16 15 13 43 43 H 1.09001 * 109.47049 * 208.49425 * 16 15 13 44 44 H 1.09001 * 109.47177 * 328.49166 * 16 15 13 45 45 H 0.97004 * 120.00110 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.37079 * 322.93124 * 25 10 8 47 47 H 1.08998 * 110.37029 * 85.14654 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6489 -2.1987 1.1806 6 1 0.5769 -2.2829 1.0023 7 6 2.0011 -2.8816 2.5036 8 6 2.3990 -2.8651 0.0560 9 8 3.5337 -2.5237 -0.2020 10 7 1.8087 -3.8404 -0.6628 11 6 0.4091 -4.2722 -0.5342 12 6 0.1768 -5.3887 -1.5742 13 6 1.3033 -5.1397 -2.6118 14 1 1.0155 -4.3663 -3.3239 15 7 1.6626 -6.3797 -3.3044 16 6 2.0000 -7.5783 -2.5327 17 6 1.6832 -6.4182 -4.6731 18 1 0.9196 -5.9057 -5.2393 19 6 2.6855 -7.1160 -5.3328 20 7 2.5166 -7.4836 -6.5853 21 14 4.2741 -7.5335 -4.4430 22 1 4.1658 -8.8889 -3.8462 23 1 5.4033 -7.5059 -5.4070 24 1 4.5161 -6.5373 -3.3686 25 6 2.4611 -4.6553 -1.7038 26 1 -0.3634 0.5314 0.8795 27 1 -0.3634 0.4959 -0.9001 28 1 -0.3633 -1.0275 0.0205 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 1.5966 -0.2688 2.1364 34 1 3.1253 -0.6346 1.3011 35 1 1.5357 -2.3400 3.3272 36 1 3.0832 -2.8829 2.6350 37 1 1.6353 -3.9083 2.4913 38 1 0.2302 -4.6555 0.4703 39 1 -0.2576 -3.4341 -0.7377 40 1 -0.8042 -5.2884 -2.0385 41 1 0.2860 -6.3711 -1.1148 42 1 1.0919 -8.1444 -2.3252 43 1 2.6908 -8.1968 -3.1057 44 1 2.4684 -7.2856 -1.5930 45 1 3.2169 -7.9716 -7.0462 46 1 3.1634 -4.0488 -2.2757 47 1 2.9739 -5.5055 -1.2541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193088905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = -29.560902 kcal Electronic energy + Delta-G solvation = -23681.484950 eV Core-core repulsion = 20478.368978 eV Total energy + Delta-G solvation = -3203.115972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17178 -37.96994 -36.42033 -34.96538 -33.07242 -31.77310 -30.14120 -28.32838 -27.32061 -26.78211 -26.25087 -24.52680 -22.52065 -22.07532 -20.31555 -19.42346 -18.50389 -17.27945 -17.10156 -16.15877 -15.33284 -15.20253 -14.96698 -14.54540 -14.16495 -13.80687 -13.51618 -13.41505 -13.01005 -12.81322 -12.75268 -12.57021 -12.36033 -12.33628 -12.13444 -12.01678 -11.89661 -11.82643 -11.71742 -11.48800 -10.87726 -10.80520 -10.73144 -10.60056 -10.57764 -10.55305 -10.19448 -9.96223 -9.64678 -9.50390 -8.58532 -8.37097 -6.87933 -6.05204 -3.52924 2.81866 3.18731 3.28223 3.45439 3.50771 4.43829 4.47058 4.57377 4.74274 4.78485 4.86395 5.06368 5.13253 5.16352 5.18633 5.23054 5.34404 5.37565 5.47574 5.49895 5.59545 5.62840 5.66707 5.72345 5.74543 5.76517 5.81085 5.89080 5.89777 6.01989 6.11037 6.12265 6.21065 6.25978 6.29875 6.30961 6.40862 6.52111 6.61347 6.65692 6.78616 7.77962 7.98960 8.31673 8.38601 8.89317 9.62404 10.02035 11.09625 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023382 B = 0.004264 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.194790 B = 6565.184144 C = 6654.706899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.110 4.110 6 H 0.090 0.910 7 C -0.139 4.139 8 C 0.531 3.469 9 O -0.545 6.545 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.150 4.150 13 C 0.172 3.828 14 H 0.087 0.913 15 N -0.595 5.595 16 C 0.107 3.893 17 C -0.276 4.276 18 H 0.081 0.919 19 C 0.039 3.961 20 N -0.899 5.899 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.301 1.301 24 H -0.268 1.268 25 C 0.080 3.920 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.019 0.981 43 H 0.047 0.953 44 H 0.031 0.969 45 H 0.265 0.735 46 H 0.074 0.926 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 11.449 17.857 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.132 4.132 6 H 0.108 0.892 7 C -0.196 4.196 8 C 0.319 3.681 9 O -0.422 6.422 10 N -0.349 5.349 11 C -0.019 4.019 12 C -0.190 4.190 13 C 0.063 3.937 14 H 0.105 0.895 15 N -0.317 5.317 16 C -0.037 4.037 17 C -0.404 4.404 18 H 0.099 0.901 19 C -0.162 4.162 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.213 1.213 23 H -0.229 1.229 24 H -0.193 1.193 25 C -0.044 4.044 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.067 11.580 17.570 21.644 hybrid contribution 0.924 -0.459 0.386 1.102 sum -4.143 11.121 17.956 21.523 Atomic orbital electron populations 1.21908 0.95383 1.01651 1.01615 1.21148 0.95619 0.96432 0.98811 1.21792 1.01157 0.95764 1.01395 1.21573 1.02317 0.91972 0.97825 1.21396 1.00935 0.96441 0.94393 0.89185 1.21685 1.02547 1.00375 0.95031 1.20275 0.86687 0.78620 0.82495 1.90677 1.19096 1.63296 1.69146 1.48573 1.12425 1.35541 1.38377 1.22029 0.82587 0.97726 0.99601 1.23126 1.01278 0.97702 0.96863 1.21632 0.90451 0.89850 0.91807 0.89489 1.43970 1.80623 1.03948 1.03172 1.21357 0.98044 0.89708 0.94596 1.18788 1.08261 1.33908 0.79465 0.90145 1.25528 0.97500 0.98150 0.95015 1.69830 1.33781 1.38853 1.11476 0.86853 0.84391 0.78044 0.79243 1.21315 1.22866 1.19269 1.23090 0.98239 0.93984 0.89072 0.92780 0.92717 0.92652 0.90998 0.92616 0.92795 0.92918 0.91329 0.90578 0.91504 0.91946 0.92288 0.92050 0.91758 0.90220 0.90662 0.96249 0.93489 0.95073 0.92531 0.90730 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.99 37.15 0.33 -1.00 16 2 C -0.10 -1.10 2.83 -90.62 -0.26 -1.35 16 3 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.10 -1.05 3.92 -26.74 -0.10 -1.15 16 5 C -0.11 -1.23 2.33 -91.77 -0.21 -1.44 16 6 H 0.09 0.86 5.06 -51.93 -0.26 0.60 16 7 C -0.14 -1.33 9.17 37.16 0.34 -0.99 16 8 C 0.53 8.30 5.84 -10.98 -0.06 8.24 16 9 O -0.54 -10.67 16.33 5.56 0.09 -10.58 16 10 N -0.62 -9.61 3.33 -170.51 -0.57 -10.18 16 11 C 0.10 1.29 5.98 -3.05 -0.02 1.27 16 12 C -0.15 -2.19 6.50 -24.89 -0.16 -2.35 16 13 C 0.17 3.27 3.55 -65.78 -0.23 3.03 16 14 H 0.09 1.72 7.96 -51.93 -0.41 1.30 16 15 N -0.60 -13.67 2.49 -171.03 -0.43 -14.09 16 16 C 0.11 2.27 8.11 59.85 0.49 2.75 16 17 C -0.28 -7.54 9.87 -15.06 -0.15 -7.69 16 18 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.04 1.12 5.33 -17.43 -0.09 1.03 16 20 N -0.90 -27.15 13.97 55.49 0.78 -26.37 16 21 Si 0.88 22.35 25.02 -169.99 -4.25 18.09 16 22 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.08 1.52 6.51 -2.53 -0.02 1.50 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 6.39 -51.93 -0.33 0.16 16 29 H 0.07 0.98 7.26 -51.93 -0.38 0.61 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.69 7.93 -51.93 -0.41 0.27 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.11 6.97 -51.93 -0.36 0.75 16 42 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 43 H 0.05 1.09 3.35 -51.93 -0.17 0.91 16 44 H 0.03 0.59 6.39 -51.93 -0.33 0.25 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.07 1.57 7.98 -51.93 -0.41 1.16 16 47 H 0.06 1.23 6.36 -51.93 -0.33 0.90 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -31.56 357.33 -7.26 -38.82 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.46 Total: -1.88 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.19 Total: 0.80 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.22 Total: -50.65 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.25 Total: 18.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.56 -7.26 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193088905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.263 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds