Wall clock time and date at job start Tue Mar 31 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 6 6 C 1.53005 * 109.47159 * 300.00546 * 4 2 1 7 7 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 8 8 C 1.50700 * 109.47112 * 185.00256 * 7 4 2 9 9 O 1.21278 * 120.00452 * 359.97438 * 8 7 4 10 10 N 1.34779 * 119.99630 * 179.97438 * 8 7 4 11 11 C 1.46925 * 120.63187 * 359.72157 * 10 8 7 12 12 C 1.53620 * 108.54421 * 126.36506 * 11 10 8 13 13 C 1.53045 * 109.24162 * 54.85609 * 12 11 10 14 14 N 1.46498 * 109.46101 * 178.48642 * 13 12 11 15 15 C 1.36930 * 120.00290 * 275.06863 * 14 13 12 16 16 H 1.08001 * 120.00010 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00210 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00409 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46958 * 89.99895 * 19 17 15 21 21 H 1.48495 * 109.47095 * 209.99498 * 19 17 15 22 22 H 1.48497 * 109.46980 * 329.99980 * 19 17 15 23 23 C 1.53039 * 109.53879 * 298.51321 * 13 12 11 24 24 C 1.46924 * 120.62810 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46812 * 179.97438 * 6 4 2 33 33 H 1.09002 * 109.46935 * 299.99411 * 6 4 2 34 34 H 1.08992 * 109.47061 * 59.99386 * 6 4 2 35 35 H 1.09001 * 109.46463 * 305.00112 * 7 4 2 36 36 H 1.08993 * 109.46613 * 65.00049 * 7 4 2 37 37 H 1.08998 * 109.58382 * 246.20015 * 11 10 8 38 38 H 1.09000 * 109.58334 * 6.62355 * 11 10 8 39 39 H 1.08997 * 109.63544 * 294.86721 * 12 11 10 40 40 H 1.09005 * 109.45825 * 174.73636 * 12 11 10 41 41 H 1.09012 * 109.44749 * 58.52247 * 13 12 11 42 42 H 0.97000 * 119.99595 * 95.06875 * 14 13 12 43 43 H 0.96996 * 120.00572 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49315 * 301.40942 * 23 13 12 45 45 H 1.09002 * 109.52355 * 181.33080 * 23 13 12 46 46 H 1.08998 * 109.58763 * 353.37847 * 24 10 8 47 47 H 1.09003 * 109.58746 * 113.65505 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 1.5299 -2.1638 -1.2493 7 6 3.5700 -0.7219 -1.2489 8 6 4.0723 -1.3223 -2.5367 9 8 3.2843 -1.7119 -3.3722 10 7 5.3975 -1.4264 -2.7598 11 6 6.3644 -0.9533 -1.7599 12 6 7.3372 -2.0987 -1.4408 13 6 7.9716 -2.5985 -2.7409 14 7 8.9273 -3.6668 -2.4384 15 6 10.2125 -3.3554 -2.0832 16 1 10.5216 -2.3221 -2.0256 17 6 11.1180 -4.3677 -1.7961 18 7 12.3535 -4.0684 -1.4551 19 14 10.5832 -6.1548 -1.8949 20 1 10.8237 -6.6682 -3.2675 21 1 11.3639 -6.9597 -0.9215 22 1 9.1367 -6.2570 -1.5747 23 6 6.8804 -3.1380 -3.6685 24 6 5.9024 -2.0100 -4.0101 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.8929 -2.6774 -2.1395 33 1 1.8933 -2.6777 -0.3593 34 1 0.4400 -2.1637 -1.2492 35 1 3.9336 0.3018 -1.1592 36 1 3.9329 -1.3115 -0.4072 37 1 6.9161 -0.1022 -2.1591 38 1 5.8369 -0.6568 -0.8532 39 1 6.7969 -2.9155 -0.9622 40 1 8.1173 -1.7366 -0.7711 41 1 8.4907 -1.7749 -3.2314 42 1 8.6496 -4.5948 -2.4897 43 1 12.9863 -4.7757 -1.2549 44 1 6.3445 -3.9450 -3.1688 45 1 7.3349 -3.5155 -4.5845 46 1 5.0701 -2.4108 -4.5886 47 1 6.4149 -1.2428 -4.5906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199733440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:25 Heat of formation + Delta-G solvation = -48.024459 kcal Electronic energy + Delta-G solvation = -23106.891494 eV Core-core repulsion = 19902.974883 eV Total energy + Delta-G solvation = -3203.916612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29646 -38.08193 -36.93187 -34.62945 -32.28863 -31.74610 -30.77227 -29.87393 -28.67638 -26.61615 -24.86179 -23.38433 -22.90693 -22.03202 -20.42456 -19.71189 -18.85842 -17.57536 -17.07020 -15.95208 -15.52513 -14.95431 -14.87780 -14.62629 -14.13377 -13.98761 -13.89508 -13.56578 -13.54028 -13.04683 -12.79780 -12.58382 -12.49302 -12.20800 -12.01011 -11.97382 -11.86308 -11.80336 -11.27652 -11.09293 -11.02985 -10.91054 -10.77978 -10.62564 -10.60636 -10.54028 -10.26600 -9.90978 -9.62464 -9.56080 -8.96225 -8.51567 -7.32064 -5.81218 -3.17086 2.69909 3.08531 3.34995 3.38399 3.43103 4.40606 4.54587 4.55662 4.63579 4.82018 4.91661 5.01464 5.08442 5.21485 5.24591 5.32761 5.34950 5.39324 5.42581 5.46583 5.52397 5.57182 5.58777 5.61998 5.68516 5.70378 5.82599 5.84740 5.89374 5.92764 5.99057 6.06081 6.10810 6.15310 6.27284 6.29331 6.34801 6.40281 6.54522 6.78557 6.91346 7.51102 7.94308 8.26064 8.37946 9.16131 9.89031 10.08860 11.37006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.003369 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.493829 B = 8308.673892 C = 8441.049704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.069 4.069 5 H 0.076 0.924 6 C -0.155 4.155 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.184 3.816 14 N -0.749 5.749 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.142 4.142 24 C 0.116 3.884 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.426 9.323 1.753 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.180 4.180 8 C 0.303 3.697 9 O -0.426 6.426 10 N -0.342 5.342 11 C -0.017 4.017 12 C -0.192 4.192 13 C 0.074 3.926 14 N -0.390 5.390 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.181 4.181 24 C -0.007 4.007 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.588 9.225 1.359 23.516 hybrid contribution -0.005 -1.343 0.170 1.354 sum -21.593 7.882 1.529 23.037 Atomic orbital electron populations 1.21877 0.95211 1.01927 1.01496 1.21175 0.95890 0.96054 0.98112 1.21930 1.01198 0.96062 1.01698 1.20926 0.92606 0.97163 0.98068 0.90536 1.22006 1.00726 0.95840 1.02629 1.21869 0.97457 1.02448 0.96179 1.20680 0.81713 0.78523 0.88778 1.90625 1.54718 1.49915 1.47372 1.48230 1.05556 1.60925 1.19516 1.21953 0.90921 0.97616 0.91174 1.22711 0.98067 0.97065 1.01362 1.20140 0.88736 0.91819 0.91918 1.42805 1.09300 1.03127 1.83807 1.19062 0.84934 0.94840 1.38588 0.89176 1.24674 0.95569 0.97398 1.01446 1.69694 1.03677 1.31794 1.52949 0.86558 0.77710 0.86645 0.77644 1.21065 1.21756 1.20377 1.22232 0.97000 0.97857 1.01027 1.21553 0.97737 0.95726 0.85652 0.92752 0.92934 0.92307 0.91188 0.92675 0.92798 0.92357 0.90690 0.93450 0.92790 0.88771 0.88950 0.91279 0.90308 0.92312 0.90211 0.92531 0.80656 0.93028 0.92026 0.90552 0.89383 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.74 2.51 -90.63 -0.23 -0.96 16 3 C -0.15 -1.08 8.85 37.15 0.33 -0.75 16 4 C -0.07 -0.67 1.62 -90.62 -0.15 -0.82 16 5 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 6 C -0.15 -1.64 8.58 37.16 0.32 -1.32 16 7 C -0.14 -1.39 3.30 -27.88 -0.09 -1.48 16 8 C 0.51 6.84 7.42 -10.98 -0.08 6.76 16 9 O -0.55 -8.84 13.38 5.56 0.07 -8.76 16 10 N -0.61 -8.00 2.97 -172.53 -0.51 -8.52 16 11 C 0.11 1.29 6.37 -3.49 -0.02 1.26 16 12 C -0.15 -2.37 5.67 -26.39 -0.15 -2.52 16 13 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 14 N -0.75 -17.09 4.92 -53.38 -0.26 -17.35 16 15 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 19 Si 0.88 21.89 27.74 -169.99 -4.71 17.17 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 23 C -0.14 -2.19 5.55 -26.63 -0.15 -2.34 16 24 C 0.12 1.58 6.43 -3.73 -0.02 1.56 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 32 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 35 H 0.09 0.79 5.96 -51.93 -0.31 0.48 16 36 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.06 8.08 -51.92 -0.42 0.64 16 42 H 0.36 8.24 5.66 -40.82 -0.23 8.01 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.25 7.01 -51.93 -0.36 0.88 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -31.41 354.99 -8.06 -39.46 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.41 Total: 5.75 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.35 Total: -5.01 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.00 Total: -53.96 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.41 -8.06 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199733440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.560 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds