Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46904 * 2 1 4 4 C 1.52995 * 109.47195 * 120.00402 * 2 1 3 5 5 H 1.09000 * 109.46927 * 300.00042 * 4 2 1 6 6 C 1.53000 * 109.47445 * 60.00168 * 4 2 1 7 7 C 1.53004 * 109.47195 * 180.02562 * 4 2 1 8 8 C 1.50700 * 109.47208 * 174.99698 * 7 4 2 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 4 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 4 11 11 C 1.46921 * 120.63392 * 359.43977 * 10 8 7 12 12 C 1.52760 * 109.00994 * 233.58899 * 11 10 8 13 13 C 1.53036 * 109.38235 * 305.58739 * 12 11 10 14 14 N 1.46503 * 109.44710 * 181.25784 * 13 12 11 15 15 C 1.36929 * 120.00391 * 84.93816 * 14 13 12 16 16 H 1.08005 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00256 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99841 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99898 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47265 * 89.99936 * 19 17 15 21 21 H 1.48501 * 109.47311 * 209.99913 * 19 17 15 22 22 H 1.48508 * 109.47156 * 330.00247 * 19 17 15 23 23 C 1.53035 * 109.53955 * 61.24292 * 13 12 11 24 24 C 1.46924 * 120.62813 * 179.72946 * 10 8 7 25 25 H 1.09000 * 109.47217 * 299.99734 * 1 2 3 26 26 H 1.09003 * 109.47136 * 59.99825 * 1 2 3 27 27 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47217 * 240.00266 * 2 1 3 29 29 H 1.09003 * 109.47367 * 300.00034 * 3 2 1 30 30 H 1.09007 * 109.47297 * 60.00079 * 3 2 1 31 31 H 1.09004 * 109.47261 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46667 * 299.99759 * 6 4 2 33 33 H 1.09000 * 109.47161 * 60.00017 * 6 4 2 34 34 H 1.09003 * 109.47289 * 180.02562 * 6 4 2 35 35 H 1.09009 * 109.46730 * 54.99604 * 7 4 2 36 36 H 1.08998 * 109.46846 * 295.00148 * 7 4 2 37 37 H 1.09004 * 109.58490 * 353.42409 * 11 10 8 38 38 H 1.09002 * 109.58518 * 113.84767 * 11 10 8 39 39 H 1.09005 * 109.56000 * 185.55371 * 12 11 10 40 40 H 1.08994 * 109.38732 * 65.51586 * 12 11 10 41 41 H 1.09002 * 109.46377 * 301.22063 * 13 12 11 42 42 H 0.97000 * 119.99617 * 264.93351 * 14 13 12 43 43 H 0.97001 * 119.99153 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50277 * 178.68099 * 23 13 12 45 45 H 1.08998 * 109.52797 * 58.59747 * 23 13 12 46 46 H 1.09006 * 109.58353 * 246.15683 * 24 10 8 47 47 H 1.09004 * 109.59032 * 6.43097 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 6 3.5701 -0.7208 1.2495 8 6 4.0724 -1.3212 2.5372 9 8 3.2842 -1.7108 3.3726 10 7 5.3975 -1.4197 2.7629 11 6 6.3645 -0.9573 1.7582 12 6 7.3411 -2.0905 1.4490 13 6 7.9751 -2.5841 2.7515 14 7 8.9343 -3.6506 2.4535 15 6 10.2191 -3.3366 2.0991 16 1 10.5255 -2.3026 2.0396 17 6 11.1281 -4.3472 1.8173 18 7 12.3633 -4.0453 1.4772 19 14 10.5988 -6.1355 1.9223 20 1 10.0782 -6.5759 0.6032 21 1 11.7638 -6.9752 2.3001 22 1 9.5334 -6.2770 2.9472 23 6 6.8843 -3.1239 3.6792 24 6 5.9024 -1.9973 4.0160 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 0.4401 -2.1638 1.2492 33 1 1.8935 -2.6776 0.3591 34 1 1.8931 -2.6776 2.1393 35 1 3.9330 0.3032 1.1601 36 1 3.9338 -1.3099 0.4076 37 1 5.8373 -0.6725 0.8476 38 1 6.9146 -0.1006 2.1475 39 1 8.1210 -1.7276 0.7794 40 1 6.8046 -2.9105 0.9719 41 1 8.4912 -1.7577 3.2402 42 1 8.6592 -4.5792 2.5074 43 1 12.9985 -4.7515 1.2806 44 1 7.3389 -3.4968 4.5970 45 1 6.3513 -3.9344 3.1820 46 1 6.4139 -1.2271 4.5933 47 1 5.0701 -2.3963 4.5960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199733450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -48.094589 kcal Electronic energy + Delta-G solvation = -23107.058570 eV Core-core repulsion = 19903.138917 eV Total energy + Delta-G solvation = -3203.919653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30328 -38.09599 -36.93879 -34.62994 -32.28725 -31.75225 -30.80081 -29.89731 -28.67626 -26.61655 -24.86598 -23.38154 -22.89591 -22.03294 -20.43538 -19.71246 -18.85232 -17.57516 -17.07135 -15.95217 -15.52831 -14.95565 -14.87815 -14.63388 -14.13108 -13.98767 -13.90091 -13.57479 -13.54682 -13.03927 -12.80572 -12.58878 -12.49650 -12.20924 -12.01126 -11.97440 -11.87238 -11.80329 -11.27612 -11.07954 -11.04602 -10.90721 -10.77877 -10.62598 -10.60084 -10.52657 -10.27176 -9.90931 -9.62642 -9.56477 -8.96329 -8.51751 -7.32145 -5.81310 -3.17129 2.69841 3.08325 3.34870 3.38372 3.43074 4.40542 4.54550 4.55625 4.63512 4.82049 4.91776 5.00869 5.08840 5.21586 5.25117 5.32904 5.34804 5.39297 5.42552 5.46311 5.52321 5.57659 5.58846 5.62187 5.68532 5.70350 5.82656 5.85040 5.89380 5.92753 5.99041 6.06406 6.11016 6.15210 6.27245 6.29312 6.34881 6.40268 6.54075 6.78495 6.91220 7.51070 7.94230 8.25987 8.37926 9.16065 9.88970 10.08804 11.36915 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.003368 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.832735 B = 8312.571867 C = 8446.747780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.069 4.069 5 H 0.076 0.924 6 C -0.155 4.155 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.107 3.893 12 C -0.152 4.152 13 C 0.184 3.816 14 N -0.749 5.749 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.142 4.142 24 C 0.116 3.884 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 9.263 -1.816 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.180 4.180 8 C 0.303 3.697 9 O -0.426 6.426 10 N -0.342 5.342 11 C -0.016 4.016 12 C -0.193 4.193 13 C 0.074 3.926 14 N -0.390 5.390 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.181 4.181 24 C -0.007 4.007 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.616 9.170 -1.416 23.523 hybrid contribution 0.007 -1.353 -0.152 1.361 sum -21.609 7.818 -1.568 23.033 Atomic orbital electron populations 1.21878 0.95213 1.01925 1.01497 1.21175 0.95889 0.96054 0.98111 1.21933 1.01201 0.96060 1.01698 1.20925 0.92608 0.97163 0.98069 0.90540 1.22005 1.00728 0.95837 1.02624 1.21872 0.97455 1.02451 0.96176 1.20679 0.81705 0.78503 0.88793 1.90627 1.54702 1.49879 1.47418 1.48227 1.05551 1.61319 1.19105 1.21770 0.90935 0.97778 0.91109 1.22559 0.98069 0.97259 1.01416 1.20133 0.88703 0.91863 0.91890 1.42801 1.09281 1.03107 1.83850 1.19063 0.85073 0.94820 1.38468 0.89176 1.24675 0.95559 0.97400 1.01467 1.69702 1.03585 1.31815 1.53003 0.86556 0.77507 0.86630 0.77857 1.21126 1.21742 1.20323 1.22236 0.96968 0.97855 1.01055 1.21566 0.97709 0.95807 0.85604 0.92746 0.92940 0.92310 0.91188 0.92798 0.92675 0.92353 0.92788 0.93448 0.90694 0.88754 0.88958 0.90320 0.91331 0.90114 0.92341 0.92555 0.80654 0.93034 0.90580 0.92030 0.91556 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.73 2.51 -90.62 -0.23 -0.96 16 3 C -0.15 -1.08 8.85 37.15 0.33 -0.75 16 4 C -0.07 -0.67 1.62 -90.62 -0.15 -0.81 16 5 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 6 C -0.15 -1.63 8.58 37.16 0.32 -1.31 16 7 C -0.14 -1.38 3.31 -27.88 -0.09 -1.48 16 8 C 0.51 6.84 7.42 -10.98 -0.08 6.75 16 9 O -0.55 -8.83 13.38 5.55 0.07 -8.76 16 10 N -0.61 -7.99 2.98 -173.03 -0.52 -8.51 16 11 C 0.11 1.29 6.31 -3.94 -0.02 1.27 16 12 C -0.15 -2.37 5.64 -26.84 -0.15 -2.53 16 13 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 14 N -0.75 -17.09 4.92 -53.39 -0.26 -17.35 16 15 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 16 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 18 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 19 Si 0.88 21.89 27.73 -169.99 -4.71 17.17 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 23 C -0.14 -2.20 5.55 -26.61 -0.15 -2.34 16 24 C 0.12 1.58 6.43 -3.71 -0.02 1.56 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 32 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.98 5.95 -51.93 -0.31 0.67 16 35 H 0.09 0.79 5.98 -51.92 -0.31 0.48 16 36 H 0.09 0.85 7.68 -51.93 -0.40 0.45 16 37 H 0.08 0.76 5.94 -51.93 -0.31 0.46 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 42 H 0.36 8.24 5.66 -40.82 -0.23 8.01 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -31.39 354.93 -8.07 -39.46 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.41 Total: 5.74 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.00 Total: -53.95 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.39 -8.07 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199733450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.639 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds