Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46888 * 2 1 4 4 C 1.52998 * 109.47124 * 119.99628 * 2 1 3 5 5 C 1.52997 * 109.47131 * 65.00440 * 4 2 1 6 6 H 1.09010 * 109.47048 * 304.99871 * 5 4 2 7 7 C 1.52997 * 109.47247 * 65.00042 * 5 4 2 8 8 C 1.50701 * 109.47516 * 185.00019 * 5 4 2 9 9 O 1.21281 * 119.99990 * 263.41489 * 8 5 4 10 10 N 1.34781 * 119.99875 * 83.40741 * 8 5 4 11 11 C 1.46925 * 120.63182 * 4.77544 * 10 8 5 12 12 C 1.52761 * 109.00987 * 233.58584 * 11 10 8 13 13 C 1.53041 * 109.38316 * 305.58758 * 12 11 10 14 14 N 1.46498 * 109.46190 * 181.26111 * 13 12 11 15 15 C 1.36936 * 119.99869 * 84.93120 * 14 13 12 16 16 H 1.07995 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.38820 * 119.99586 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99486 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47156 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46790 * 120.00300 * 19 17 15 22 22 H 1.48507 * 109.47036 * 240.00066 * 19 17 15 23 23 C 1.53041 * 109.53580 * 61.24003 * 13 12 11 24 24 C 1.46928 * 120.62712 * 185.06017 * 10 8 5 25 25 H 1.08997 * 109.47083 * 299.99948 * 1 2 3 26 26 H 1.08995 * 109.47187 * 60.00362 * 1 2 3 27 27 H 1.09006 * 109.46481 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47334 * 239.99616 * 2 1 3 29 29 H 1.08994 * 109.47105 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.46911 * 299.99808 * 3 2 1 31 31 H 1.09001 * 109.46647 * 59.99687 * 3 2 1 32 32 H 1.09000 * 109.47440 * 305.00340 * 4 2 1 33 33 H 1.08999 * 109.47529 * 185.00319 * 4 2 1 34 34 H 1.09001 * 109.46771 * 293.63543 * 7 5 4 35 35 H 1.09005 * 109.47210 * 173.64288 * 7 5 4 36 36 H 1.08995 * 109.47212 * 53.63800 * 7 5 4 37 37 H 1.08999 * 109.58467 * 353.42111 * 11 10 8 38 38 H 1.09000 * 109.58217 * 113.84709 * 11 10 8 39 39 H 1.08996 * 109.56183 * 185.55608 * 12 11 10 40 40 H 1.08995 * 109.35982 * 65.49875 * 12 11 10 41 41 H 1.09004 * 109.46354 * 301.22201 * 13 12 11 42 42 H 0.97003 * 120.00163 * 264.93258 * 14 13 12 43 43 H 0.96993 * 120.00081 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.49692 * 178.68050 * 23 13 12 45 45 H 1.08997 * 109.52723 * 58.60552 * 23 13 12 46 46 H 1.09002 * 109.58619 * 246.15248 * 24 10 8 47 47 H 1.08996 * 109.58873 * 6.43997 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6354 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0528 7 6 2.3451 -2.8707 0.0128 8 6 2.0294 -2.8783 2.4723 9 8 3.0719 -3.4948 2.5362 10 7 1.2234 -2.8039 3.5500 11 6 -0.0894 -2.1504 3.4592 12 6 -0.1913 -1.0849 4.5491 13 6 0.1019 -1.7207 5.9099 14 7 -0.0249 -0.7069 6.9598 15 6 -1.2526 -0.4297 7.4993 16 1 -2.1273 -0.9588 7.1511 17 6 -1.3728 0.5313 8.4938 18 7 -0.3068 1.1765 8.9178 19 14 -3.0475 0.9089 9.2302 20 1 -4.0758 0.0526 8.5863 21 1 -3.0194 0.6355 10.6895 22 1 -3.3784 2.3383 9.0006 23 6 1.5244 -2.2851 5.9153 24 6 1.6435 -3.3691 4.8394 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 1.9753 -2.4528 -0.9235 35 1 2.1468 -3.9423 0.0358 36 1 3.4186 -2.6981 0.0889 37 1 -0.1975 -1.6820 2.4809 38 1 -0.8766 -2.8909 3.6012 39 1 -1.1962 -0.6627 4.5538 40 1 0.5345 -0.2960 4.3521 41 1 -0.6089 -2.5260 6.0953 42 1 0.7608 -0.2319 7.2728 43 1 -0.3907 1.8478 9.6129 44 1 1.7409 -2.7169 6.8924 45 1 2.2346 -1.4851 5.7058 46 1 1.0005 -4.2110 5.0963 47 1 2.6776 -3.7068 4.7709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203107550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = -53.232797 kcal Electronic energy + Delta-G solvation = -23558.163151 eV Core-core repulsion = 20354.020688 eV Total energy + Delta-G solvation = -3204.142462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34456 -37.69012 -36.90150 -34.46602 -32.81408 -31.91229 -30.73658 -29.23494 -27.33716 -26.82579 -25.25558 -23.74819 -22.97571 -22.02756 -20.18041 -19.79836 -18.47714 -17.39262 -17.05289 -15.90235 -15.60243 -14.93950 -14.84292 -14.31197 -13.95467 -13.83770 -13.66858 -13.48927 -13.42906 -13.27657 -12.85480 -12.57100 -12.33117 -12.16055 -12.01158 -11.88122 -11.63949 -11.50463 -11.34363 -10.97036 -10.96331 -10.88262 -10.83930 -10.64051 -10.60968 -10.46505 -10.21852 -9.83575 -9.69955 -9.46504 -8.93100 -8.45395 -7.00094 -5.80124 -3.09314 2.72385 3.15328 3.40266 3.45893 3.48251 4.42322 4.55235 4.62106 4.69618 4.86450 4.93925 5.02223 5.17743 5.28952 5.33425 5.34927 5.41944 5.45466 5.50300 5.52824 5.59985 5.66423 5.69582 5.71594 5.76453 5.79844 5.84167 5.90076 5.96167 6.01607 6.05705 6.09497 6.18776 6.23138 6.28081 6.37759 6.40145 6.50482 6.63573 6.88929 7.02821 7.57381 7.66506 8.30870 8.38119 9.49483 10.07093 10.41763 11.42533 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.004256 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.663317 B = 6577.381162 C = 7470.424471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.105 4.105 5 C -0.113 4.113 6 H 0.094 0.906 7 C -0.132 4.132 8 C 0.518 3.482 9 O -0.551 6.551 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.150 4.150 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 C 0.115 3.885 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -5.159 -18.643 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.134 4.134 6 H 0.112 0.888 7 C -0.190 4.190 8 C 0.306 3.694 9 O -0.429 6.429 10 N -0.338 5.338 11 C -0.019 4.019 12 C -0.191 4.191 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.177 4.177 24 C -0.007 4.007 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.920 -5.480 -18.516 19.529 hybrid contribution -0.808 0.574 0.686 1.205 sum 2.112 -4.906 -17.830 18.613 Atomic orbital electron populations 1.21943 0.95172 1.01766 1.02123 1.21136 0.95977 0.96170 0.98047 1.21842 1.00944 0.95875 1.01934 1.21627 1.01675 0.92184 0.98848 1.21409 1.02237 0.96434 0.93316 0.88775 1.21653 1.01151 1.00164 0.95988 1.20663 0.83540 0.80059 0.85119 1.90649 1.24864 1.43179 1.84235 1.48189 1.18327 1.57240 1.10077 1.21846 0.83624 0.95942 1.00499 1.22587 1.02722 0.97499 0.96314 1.20160 0.93429 0.91603 0.87929 1.42444 1.07981 1.44092 1.41932 1.19277 0.86525 1.16507 1.14751 0.91126 1.24744 0.97092 0.99369 0.99668 1.69669 1.27363 1.28524 1.32471 0.86150 0.83573 0.77740 0.78913 1.20550 1.21872 1.21883 1.22200 0.99134 0.98224 0.98179 1.21597 1.01312 0.95815 0.82008 0.92165 0.92753 0.92558 0.90915 0.92749 0.92749 0.92380 0.90950 0.91293 0.92014 0.92547 0.91765 0.90182 0.91633 0.90674 0.92221 0.93462 0.78277 0.93538 0.90616 0.91918 0.91740 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 2 C -0.09 -0.81 2.79 -90.61 -0.25 -1.06 16 3 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.11 -1.10 3.96 -26.73 -0.11 -1.21 16 5 C -0.11 -1.23 1.74 -91.77 -0.16 -1.39 16 6 H 0.09 0.89 4.56 -51.92 -0.24 0.66 16 7 C -0.13 -1.32 8.20 37.16 0.30 -1.02 16 8 C 0.52 7.48 6.81 -10.98 -0.07 7.40 16 9 O -0.55 -9.74 15.63 5.56 0.09 -9.65 16 10 N -0.61 -8.52 2.98 -173.03 -0.52 -9.04 16 11 C 0.10 1.33 6.08 -3.93 -0.02 1.31 16 12 C -0.15 -2.44 5.64 -26.83 -0.15 -2.59 16 13 C 0.18 3.38 2.73 -67.89 -0.19 3.19 16 14 N -0.72 -17.59 5.12 -53.38 -0.27 -17.86 16 15 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 19 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 C 0.12 1.69 6.42 -3.71 -0.02 1.67 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 6.46 -51.93 -0.34 0.09 16 28 H 0.07 0.58 6.48 -51.93 -0.34 0.24 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.49 6.77 -51.93 -0.35 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.08 0.86 5.19 -51.93 -0.27 0.59 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.32 7.03 -51.93 -0.37 0.96 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -30.82 361.40 -8.45 -39.26 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.50 Total: 7.00 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.39 Total: -5.02 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.06 Total: -53.97 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.82 -8.45 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203107550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.969 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds