Wall clock time and date at job start Tue Mar 31 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 C 1.52999 * 109.46969 * 120.00575 * 2 1 3 5 5 H 1.09003 * 109.47049 * 299.99538 * 4 2 1 6 6 C 1.52999 * 109.47261 * 59.99803 * 4 2 1 7 7 C 1.50704 * 109.46948 * 179.97438 * 4 2 1 8 8 O 1.21280 * 119.99979 * 334.90279 * 7 4 2 9 9 N 1.34778 * 119.99413 * 154.90788 * 7 4 2 10 10 C 1.46925 * 120.63596 * 4.94207 * 9 7 4 11 11 C 1.52763 * 109.00704 * 233.58739 * 10 9 7 12 12 C 1.53039 * 109.38282 * 305.58570 * 11 10 9 13 13 C 1.52995 * 109.46085 * 181.26190 * 12 11 10 14 14 N 1.46501 * 109.47096 * 64.93376 * 13 12 11 15 15 C 1.36943 * 120.00144 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99720 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99496 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00564 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47280 * 89.99557 * 19 17 15 21 21 H 1.48498 * 109.47642 * 209.99630 * 19 17 15 22 22 H 1.48499 * 109.46858 * 330.00007 * 19 17 15 23 23 C 1.53041 * 109.53814 * 61.24128 * 12 11 10 24 24 C 1.46927 * 120.62492 * 185.22789 * 9 7 4 25 25 H 1.08999 * 109.47526 * 300.00039 * 1 2 3 26 26 H 1.09005 * 109.47221 * 59.99475 * 1 2 3 27 27 H 1.09003 * 109.47409 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46858 * 240.00230 * 2 1 3 29 29 H 1.08998 * 109.46560 * 60.00468 * 3 2 1 30 30 H 1.08996 * 109.46850 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46989 * 300.00232 * 3 2 1 32 32 H 1.09003 * 109.47075 * 294.91784 * 6 4 2 33 33 H 1.09000 * 109.47066 * 174.92453 * 6 4 2 34 34 H 1.09000 * 109.47526 * 54.91943 * 6 4 2 35 35 H 1.09001 * 109.58565 * 353.41777 * 10 9 7 36 36 H 1.08992 * 109.58317 * 113.84594 * 10 9 7 37 37 H 1.09000 * 109.56208 * 185.55581 * 11 10 9 38 38 H 1.09002 * 109.36394 * 65.49485 * 11 10 9 39 39 H 1.08997 * 109.46495 * 301.22257 * 12 11 10 40 40 H 1.08998 * 109.47656 * 184.93469 * 13 12 11 41 41 H 1.09003 * 109.47344 * 304.93393 * 13 12 11 42 42 H 0.96996 * 120.00175 * 0.02562 * 14 13 12 43 43 H 0.97000 * 119.99792 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49684 * 178.68187 * 23 12 11 45 45 H 1.09002 * 109.52182 * 58.60249 * 23 12 11 46 46 H 1.09004 * 109.58524 * 246.15384 * 24 9 7 47 47 H 1.09003 * 109.58724 * 6.42936 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5299 -2.1639 1.2491 7 6 3.5470 -0.7219 1.2488 8 8 4.1532 -0.6324 0.2022 9 7 4.2210 -0.8220 2.4117 10 6 3.5046 -1.0395 3.6759 11 6 3.9216 0.0376 4.6757 12 6 5.4462 0.0434 4.8097 13 6 5.8638 1.1002 5.8341 14 7 5.3585 0.7246 7.1569 15 6 5.6107 1.5251 8.2390 16 1 6.1819 2.4336 8.1171 17 6 5.1314 1.1694 9.4922 18 7 5.3735 1.9392 10.5321 19 14 4.1430 -0.4015 9.7029 20 1 5.0618 -1.5273 10.0089 21 1 3.1777 -0.2332 10.8188 22 1 3.4036 -0.6931 8.4485 23 6 6.0778 0.3694 3.4544 24 6 5.6856 -0.7093 2.4400 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 0.4437 -2.1652 1.3401 33 1 1.9656 -2.7033 2.0901 34 1 1.8170 -2.6507 0.3171 35 1 2.4303 -0.9786 3.5023 36 1 3.7574 -2.0219 4.0747 37 1 3.4720 -0.1717 5.6464 38 1 3.5840 1.0110 4.3201 39 1 5.7853 -0.9378 5.1417 40 1 6.9514 1.1657 5.8659 41 1 5.4498 2.0671 5.5481 42 1 4.8458 -0.0915 7.2665 43 1 5.0389 1.6904 11.4079 44 1 7.1628 0.3964 3.5557 45 1 5.7203 1.3398 3.1099 46 1 6.1199 -1.6643 2.7359 47 1 6.0501 -0.4333 1.4505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206452799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:16 Heat of formation + Delta-G solvation = -48.299884 kcal Electronic energy + Delta-G solvation = -23376.600299 eV Core-core repulsion = 20172.671744 eV Total energy + Delta-G solvation = -3203.928555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63472 -38.18689 -36.29185 -35.11489 -32.98459 -31.65712 -30.71393 -30.55578 -27.64257 -26.95198 -24.76423 -23.42745 -23.34765 -21.74990 -20.82488 -19.88805 -18.85442 -17.76040 -17.21442 -16.16021 -15.39953 -14.85897 -14.71724 -14.63675 -14.36799 -14.15617 -14.10387 -13.68038 -13.32352 -13.09662 -12.75396 -12.66506 -12.47230 -12.41705 -12.38014 -12.26743 -11.91837 -11.75914 -11.41492 -11.30594 -11.11391 -10.95475 -10.93172 -10.75525 -10.55719 -10.38613 -10.27292 -10.11975 -9.63807 -9.59621 -8.91650 -8.67776 -7.24410 -5.78530 -3.13905 2.55691 2.90585 3.32678 3.36049 3.42323 4.28021 4.40805 4.56436 4.61869 4.71640 4.84638 4.90054 4.99553 5.06847 5.08097 5.18534 5.24344 5.27102 5.38040 5.44402 5.47142 5.51950 5.55051 5.56772 5.64235 5.70160 5.71698 5.72590 5.81298 5.84579 5.90671 5.95727 6.05953 6.11442 6.15362 6.17830 6.29622 6.33312 6.50860 6.68089 6.78614 7.33566 7.98289 8.11061 8.40675 9.19803 9.91979 10.12042 11.40121 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.003824 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.326956 B = 7319.694530 C = 7742.448873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.110 4.110 5 H 0.094 0.906 6 C -0.144 4.144 7 C 0.523 3.477 8 O -0.546 6.546 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.129 4.129 12 C -0.098 4.098 13 C 0.163 3.837 14 N -0.755 5.755 15 C -0.243 4.243 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 -7.599 -20.900 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.131 4.131 5 H 0.112 0.888 6 C -0.201 4.201 7 C 0.311 3.689 8 O -0.423 6.423 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.167 4.167 12 C -0.116 4.116 13 C 0.035 3.965 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.912 -7.358 -21.312 23.894 hybrid contribution -0.680 -1.034 0.592 1.372 sum -8.592 -8.391 -20.720 23.949 Atomic orbital electron populations 1.21908 0.94841 1.01874 1.01980 1.20946 0.95308 0.96373 0.97025 1.21895 1.02107 0.95407 1.01494 1.21451 0.91922 0.98777 1.00942 0.88805 1.21804 1.01752 0.93876 1.02700 1.20612 0.89968 0.75239 0.83071 1.90653 1.70369 1.50244 1.31076 1.48178 1.07450 1.71505 1.07055 1.21831 0.96901 0.99455 0.83802 1.21892 0.96710 0.98876 0.99227 1.21353 0.94741 1.00616 0.94936 1.20647 0.96686 0.94811 0.84311 1.42724 1.65876 1.27153 1.04368 1.19076 1.28762 1.03821 0.85680 0.89281 1.24681 1.00766 0.98288 0.95527 1.69706 1.50737 1.38544 0.99316 0.86541 0.80332 0.84454 0.77107 1.21103 1.21732 1.20397 1.21894 1.01092 0.98822 0.94557 1.21610 0.79459 0.99061 1.00884 0.92560 0.92473 0.92354 0.90213 0.92941 0.91880 0.92626 0.91100 0.92155 0.91922 0.89658 0.91256 0.89958 0.91368 0.91051 0.95478 0.95607 0.80722 0.93064 0.90470 0.91449 0.91692 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.08 -0.73 2.14 -90.62 -0.19 -0.92 16 3 C -0.15 -1.53 8.91 37.16 0.33 -1.20 16 4 C -0.11 -1.04 1.46 -91.77 -0.13 -1.18 16 5 H 0.09 0.83 6.48 -51.93 -0.34 0.49 16 6 C -0.14 -1.13 8.45 37.16 0.31 -0.82 16 7 C 0.52 6.47 5.99 -10.98 -0.07 6.41 16 8 O -0.55 -8.41 14.46 5.56 0.08 -8.33 16 9 N -0.61 -7.13 2.98 -173.03 -0.52 -7.65 16 10 C 0.10 1.09 5.79 -3.93 -0.02 1.07 16 11 C -0.13 -1.70 5.23 -26.83 -0.14 -1.84 16 12 C -0.10 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.16 3.04 5.65 -4.04 -0.02 3.01 16 14 N -0.76 -17.49 5.12 -59.91 -0.31 -17.79 16 15 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 19 Si 0.89 21.68 27.74 -169.99 -4.71 16.97 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 23 C -0.12 -1.52 5.36 -26.61 -0.14 -1.66 16 24 C 0.11 1.31 6.42 -3.71 -0.02 1.29 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 6.55 -51.93 -0.34 0.03 16 28 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.45 6.71 -51.93 -0.35 0.10 16 33 H 0.06 0.46 7.44 -51.93 -0.39 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.76 5.15 -51.93 -0.27 0.49 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.36 8.01 4.71 -40.82 -0.19 7.82 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -32.37 355.16 -7.99 -40.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.44 Total: 4.80 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.22 Total: -5.19 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.05 Total: -53.96 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.37 -7.99 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206452799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.935 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds