Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 C 1.53006 * 109.47177 * 119.99832 * 2 1 3 5 5 H 1.09002 * 109.46824 * 300.00279 * 4 2 1 6 6 C 1.52993 * 109.47155 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.46846 * 59.99862 * 4 2 1 8 8 C 1.50703 * 109.46912 * 185.00257 * 7 4 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 4 11 11 C 1.46926 * 120.62694 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77757 * 233.58761 * 11 10 8 13 13 C 1.53041 * 109.31182 * 305.36758 * 12 11 10 14 14 C 1.53041 * 109.53878 * 61.36234 * 13 12 11 15 15 H 1.09004 * 109.49652 * 58.61950 * 14 13 12 16 16 N 1.46496 * 109.50017 * 178.67975 * 14 13 12 17 17 C 1.36933 * 120.00333 * 275.00513 * 16 14 13 18 18 H 1.08001 * 120.00036 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00157 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99971 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46904 * 89.99839 * 21 19 17 23 23 H 1.48503 * 109.47166 * 209.99186 * 21 19 17 24 24 H 1.48492 * 109.47207 * 329.99555 * 21 19 17 25 25 C 1.46922 * 120.63244 * 179.72194 * 10 8 7 26 26 H 1.08990 * 109.47113 * 300.00243 * 1 2 3 27 27 H 1.08998 * 109.46717 * 60.00385 * 1 2 3 28 28 H 1.09001 * 109.46640 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47471 * 239.99715 * 2 1 3 30 30 H 1.09001 * 109.47624 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46642 * 299.99939 * 3 2 1 32 32 H 1.09002 * 109.47069 * 59.99469 * 3 2 1 33 33 H 1.08993 * 109.47639 * 299.99905 * 6 4 2 34 34 H 1.09004 * 109.47135 * 60.00050 * 6 4 2 35 35 H 1.09002 * 109.47179 * 179.97438 * 6 4 2 36 36 H 1.09002 * 109.47398 * 305.00335 * 7 4 2 37 37 H 1.09001 * 109.47194 * 65.00515 * 7 4 2 38 38 H 1.09004 * 109.58973 * 353.37467 * 11 10 8 39 39 H 1.09002 * 109.58386 * 113.80333 * 11 10 8 40 40 H 1.08997 * 109.49594 * 65.31573 * 12 11 10 41 41 H 1.09004 * 109.50139 * 185.38422 * 12 11 10 42 42 H 1.09003 * 109.46015 * 181.38272 * 13 12 11 43 43 H 1.08994 * 109.46044 * 301.35815 * 13 12 11 44 44 H 0.96996 * 119.99572 * 95.00293 * 16 14 13 45 45 H 0.97003 * 119.99941 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58436 * 246.19706 * 25 10 8 47 47 H 1.09002 * 109.58650 * 6.61866 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7218 1.2490 7 6 1.5300 -2.1637 1.2493 8 6 1.9286 -2.8374 2.5371 9 8 2.5590 -2.2244 3.3723 10 7 1.5855 -4.1216 2.7601 11 6 0.8224 -4.8774 1.7576 12 6 -0.4211 -5.4699 2.4280 13 6 0.0044 -6.2931 3.6460 14 6 0.7114 -5.3857 4.6555 15 1 0.0399 -4.5805 4.9535 16 7 1.0903 -6.1680 5.8347 17 6 0.1867 -6.3660 6.8443 18 1 -0.8052 -5.9451 6.7715 19 6 0.5459 -7.1068 7.9619 20 7 1.7550 -7.6193 8.0509 21 14 -0.6866 -7.3763 9.3395 22 1 -1.4617 -8.6151 9.0749 23 1 0.0353 -7.5105 10.6303 24 1 -1.6130 -6.2179 9.4085 25 6 1.9721 -4.7938 4.0080 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.9330 -1.2359 0.3591 34 1 3.9337 0.3058 1.2487 35 1 3.9333 -1.2352 2.1392 36 1 0.4437 -2.1650 1.1597 37 1 1.9647 -2.7028 0.4075 38 1 0.5195 -4.2109 0.9500 39 1 1.4404 -5.6816 1.3581 40 1 -1.0816 -4.6636 2.7467 41 1 -0.9455 -6.1115 1.7199 42 1 -0.8766 -6.7360 4.1107 43 1 0.6847 -7.0839 3.3302 44 1 1.9813 -6.5457 5.9002 45 1 2.0059 -8.1373 8.8317 46 1 2.6820 -5.5913 3.7886 47 1 2.4282 -4.0721 4.6857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207644582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = -50.953543 kcal Electronic energy + Delta-G solvation = -23141.931645 eV Core-core repulsion = 19937.888019 eV Total energy + Delta-G solvation = -3204.043627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18454 -37.98686 -36.78261 -34.47222 -32.23641 -31.72580 -31.11846 -29.12244 -28.08517 -26.54818 -24.90019 -23.85259 -22.81082 -22.02786 -20.17513 -19.65911 -18.66894 -17.18173 -17.02377 -15.80623 -15.57577 -14.74630 -14.68072 -14.56650 -14.08277 -14.00055 -13.80915 -13.50687 -13.44270 -12.93911 -12.86894 -12.67883 -12.49742 -12.23460 -11.99751 -11.92569 -11.73906 -11.23688 -11.12797 -10.92973 -10.89699 -10.77881 -10.65747 -10.58757 -10.48215 -10.39946 -10.33033 -10.06908 -9.71582 -9.40305 -8.90844 -8.34263 -6.98344 -5.77466 -3.06969 2.82723 3.17968 3.43423 3.48854 3.50571 4.45872 4.57782 4.59745 4.67616 4.86956 4.90407 5.02310 5.16721 5.25028 5.32101 5.35021 5.42314 5.45690 5.53095 5.55299 5.57731 5.62593 5.68742 5.73661 5.74966 5.77445 5.83069 5.88265 5.92642 6.03224 6.05830 6.14282 6.17643 6.25859 6.34742 6.39613 6.45205 6.56882 6.74599 6.89428 7.05712 7.64910 7.69411 8.38949 8.42058 9.51734 10.07391 10.42457 11.45096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.003366 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.619326 B = 8315.905235 C = 8545.344366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.071 4.071 5 H 0.078 0.922 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.106 3.894 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 11.979 -20.474 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.090 4.090 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.017 4.017 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.284 12.308 -19.872 23.411 hybrid contribution -0.500 -0.581 0.744 1.069 sum -1.784 11.727 -19.128 22.507 Atomic orbital electron populations 1.21934 0.95413 1.01825 1.01745 1.21169 0.95580 0.96337 0.98015 1.21881 1.01318 0.95829 1.01528 1.20941 0.96455 0.93404 0.98152 0.90363 1.22001 0.94809 1.01789 1.02563 1.21857 1.02828 0.97018 0.96064 1.20661 0.79362 0.81226 0.88817 1.90660 1.40265 1.63664 1.47130 1.48163 1.54942 1.11646 1.19372 1.21755 0.93251 0.95898 0.90605 1.21937 0.96673 1.00075 0.98559 1.22279 1.01433 0.98869 0.95191 1.20553 0.93265 0.92894 0.87498 0.93282 1.42315 1.15127 1.61571 1.17239 1.19205 0.94279 1.27106 0.96376 0.91186 1.24749 0.96747 1.00787 0.98572 1.69662 1.18268 1.39877 1.30209 0.86187 0.80228 0.77883 0.81877 1.21727 1.21738 1.20739 1.22055 0.97894 0.96993 0.84767 0.92564 0.92862 0.92419 0.91330 0.92300 0.92993 0.92664 0.93593 0.92773 0.90553 0.88821 0.89280 0.90313 0.91493 0.91902 0.91403 0.91620 0.92512 0.78210 0.93461 0.91865 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.85 37.16 0.33 -0.80 16 2 C -0.09 -0.74 2.51 -90.61 -0.23 -0.97 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.07 -0.73 1.62 -90.62 -0.15 -0.88 16 5 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 6 C -0.15 -1.69 8.58 37.15 0.32 -1.37 16 7 C -0.14 -1.41 3.30 -27.88 -0.09 -1.51 16 8 C 0.51 7.54 7.42 -10.98 -0.08 7.46 16 9 O -0.54 -9.99 13.38 5.56 0.07 -9.92 16 10 N -0.61 -8.91 2.97 -172.52 -0.51 -9.42 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.19 16 12 C -0.13 -1.67 6.08 -26.61 -0.16 -1.84 16 13 C -0.14 -2.34 5.46 -26.69 -0.15 -2.48 16 14 C 0.17 3.39 2.93 -67.61 -0.20 3.19 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.17 5.13 -53.11 -0.27 -18.44 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.11 1.91 5.93 -3.51 -0.02 1.88 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.54 6.43 -51.93 -0.33 0.20 16 35 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 36 H 0.09 0.83 5.72 -51.93 -0.30 0.53 16 37 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.52 358.11 -8.44 -39.96 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.46 Total: 6.62 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.37 Total: -4.16 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.52 -8.44 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207644582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.994 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds