Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47057 * 120.00250 * 2 1 3 5 5 H 1.08995 * 109.46639 * 299.99442 * 4 2 1 6 6 C 1.53007 * 109.46875 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47338 * 60.00219 * 4 2 1 8 8 C 1.50700 * 109.46981 * 184.99955 * 7 4 2 9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 4 10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 4 11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7 12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 N 1.46501 * 109.49630 * 181.31171 * 14 13 12 17 17 C 1.36937 * 120.00201 * 85.00078 * 16 14 13 18 18 H 1.07998 * 119.99752 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99989 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99714 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00156 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46949 * 90.00092 * 21 19 17 23 23 H 1.48495 * 109.47004 * 209.99769 * 21 19 17 24 24 H 1.48493 * 109.46905 * 330.00118 * 21 19 17 25 25 C 1.46928 * 120.63179 * 180.02562 * 10 8 7 26 26 H 1.08995 * 109.47175 * 59.99982 * 1 2 3 27 27 H 1.09003 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46957 * 299.99588 * 1 2 3 29 29 H 1.09007 * 109.46955 * 239.99950 * 2 1 3 30 30 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46828 * 300.00019 * 3 2 1 32 32 H 1.08995 * 109.46856 * 59.99900 * 3 2 1 33 33 H 1.08998 * 109.46904 * 59.99886 * 6 4 2 34 34 H 1.08995 * 109.46992 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47070 * 300.00119 * 6 4 2 36 36 H 1.09000 * 109.47400 * 64.99645 * 7 4 2 37 37 H 1.09001 * 109.46877 * 304.99611 * 7 4 2 38 38 H 1.08998 * 109.58425 * 6.63242 * 11 10 8 39 39 H 1.08995 * 109.70793 * 246.26860 * 11 10 8 40 40 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 41 41 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 42 42 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 43 43 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 44 44 H 0.96996 * 119.99546 * 264.99835 * 16 14 13 45 45 H 0.97004 * 119.99547 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58766 * 353.37877 * 25 10 8 47 47 H 1.09002 * 109.58364 * 113.65972 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7219 1.2489 7 6 1.5301 -2.1638 1.2492 8 6 1.9288 -2.8376 2.5369 9 8 2.5592 -2.2245 3.3722 10 7 1.5848 -4.1214 2.7603 11 6 0.8208 -4.8769 1.7582 12 6 1.5711 -6.1745 1.4415 13 6 1.8309 -6.9391 2.7416 14 6 2.7037 -6.0900 3.6688 15 1 3.6431 -5.8541 3.1689 16 7 2.9778 -6.8351 4.9000 17 6 4.0208 -7.7213 4.9462 18 1 4.6409 -7.8713 4.0749 19 6 4.2808 -8.4268 6.1130 20 7 5.2830 -9.2789 6.1572 21 14 3.2077 -8.1679 7.6199 22 1 2.0722 -9.1244 7.5892 23 1 4.0134 -8.3955 8.8464 24 1 2.6845 -6.7782 7.6221 25 6 1.9658 -4.7917 4.0110 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9337 0.3057 1.2487 34 1 3.9334 -1.2353 2.1390 35 1 3.9330 -1.2359 0.3589 36 1 1.9646 -2.7028 0.4074 37 1 0.4437 -2.1651 1.1597 38 1 0.7206 -4.2820 0.8504 39 1 -0.1680 -5.1133 2.1513 40 1 2.5212 -5.9377 0.9627 41 1 0.9695 -6.7891 0.7720 42 1 0.8816 -7.1539 3.2324 43 1 2.3432 -7.8745 2.5166 44 1 2.4206 -6.7006 5.6825 45 1 5.4645 -9.7722 6.9725 46 1 2.6209 -4.1405 4.5897 47 1 1.0712 -5.0188 4.5910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207644583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = -46.718270 kcal Electronic energy + Delta-G solvation = -23205.952019 eV Core-core repulsion = 20002.092048 eV Total energy + Delta-G solvation = -3203.859971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26604 -38.07297 -36.86285 -34.63904 -32.26595 -31.78737 -31.29829 -29.37546 -28.39217 -26.61788 -24.97035 -23.76185 -22.79780 -21.94986 -20.25621 -19.68108 -18.80732 -17.64452 -17.09233 -15.90274 -15.47158 -15.03018 -14.71442 -14.58632 -14.14135 -14.01860 -13.76631 -13.70664 -13.59292 -12.94385 -12.77083 -12.73544 -12.53056 -12.42487 -12.06370 -11.95650 -11.82744 -11.40379 -11.25718 -11.10292 -11.00873 -10.81434 -10.66730 -10.62353 -10.54107 -10.48887 -10.37101 -10.08862 -9.61422 -9.50154 -8.94293 -8.43523 -7.30116 -5.78260 -3.14791 2.75318 3.09267 3.37655 3.40799 3.45672 4.41028 4.54715 4.58312 4.64058 4.82031 4.85056 4.94328 5.09580 5.20804 5.25679 5.30375 5.37946 5.39571 5.43207 5.48021 5.52752 5.55105 5.59017 5.65473 5.68437 5.71442 5.72487 5.85914 5.90130 5.92193 6.00186 6.04652 6.10006 6.13084 6.30854 6.31361 6.43668 6.46770 6.63499 6.79659 6.94384 7.55775 7.96751 8.32633 8.40312 9.17913 9.90358 10.09320 11.39892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.003542 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.738361 B = 7903.636380 C = 8236.998623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.156 4.156 7 C -0.138 4.138 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.173 3.827 15 H 0.058 0.942 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.276 1.276 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 16.830 -15.100 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.089 4.089 5 H 0.095 0.905 6 C -0.213 4.213 7 C -0.178 4.178 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.020 4.020 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.686 17.013 -14.681 25.329 hybrid contribution -0.792 -0.180 1.079 1.351 sum -12.477 16.833 -13.602 24.981 Atomic orbital electron populations 1.21931 0.95480 1.01749 1.01699 1.21174 0.95508 0.96383 0.98092 1.21878 1.01413 0.95780 1.01482 1.20937 0.96570 0.93292 0.98067 0.90482 1.22011 0.94667 1.01827 1.02763 1.21860 1.02715 0.97080 0.96115 1.20681 0.79152 0.81288 0.88839 1.90663 1.39953 1.63811 1.47217 1.48128 1.55197 1.11457 1.19360 1.21768 0.94822 0.93483 0.91487 1.21931 1.00573 0.95774 0.98965 1.22240 1.00736 1.00080 0.94720 1.20452 0.96065 0.88891 0.88302 0.92405 1.42679 1.36701 1.49526 1.09896 1.19032 1.05165 1.13920 0.99173 0.89189 1.24667 0.98014 0.98766 0.97570 1.69703 1.30842 1.29687 1.27834 0.86550 0.80337 0.77769 0.83913 1.21081 1.21688 1.20232 1.21976 0.99716 0.95083 0.85234 0.92838 0.92461 0.92658 0.91234 0.92231 0.92980 0.92718 0.92757 0.90504 0.93451 0.89046 0.88924 0.90182 0.91494 0.91681 0.91212 0.92602 0.91093 0.80605 0.93016 0.88901 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.85 37.16 0.33 -0.70 16 2 C -0.09 -0.72 2.51 -90.62 -0.23 -0.94 16 3 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 4 C -0.07 -0.69 1.62 -90.62 -0.15 -0.84 16 5 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 6 C -0.16 -1.73 8.58 37.16 0.32 -1.41 16 7 C -0.14 -1.35 3.30 -27.88 -0.09 -1.44 16 8 C 0.51 7.24 7.42 -10.99 -0.08 7.16 16 9 O -0.54 -9.63 13.38 5.56 0.07 -9.55 16 10 N -0.61 -8.46 2.97 -172.75 -0.51 -8.97 16 11 C 0.11 1.13 6.34 -3.70 -0.02 1.11 16 12 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 13 C -0.14 -2.24 5.47 -26.69 -0.15 -2.38 16 14 C 0.17 3.33 2.92 -67.80 -0.20 3.13 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 N -0.75 -17.60 4.93 -53.30 -0.26 -17.86 16 17 C -0.24 -6.84 10.41 -15.06 -0.16 -7.00 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 21 Si 0.88 22.19 27.74 -169.99 -4.71 17.47 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C 0.10 1.75 5.90 -3.70 -0.02 1.72 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 34 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 37 H 0.09 0.73 5.97 -51.93 -0.31 0.42 16 38 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.09 1.78 7.01 -51.93 -0.36 1.42 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -32.41 354.96 -8.08 -40.50 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.41 Total: 5.73 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.38 Total: -4.06 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.00 Total: -55.43 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.41 -8.08 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207644583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds