Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47445 * 2 1 4 4 C 1.53002 * 109.47415 * 119.99874 * 2 1 3 5 5 H 1.09002 * 109.47070 * 300.00053 * 4 2 1 6 6 C 1.52997 * 109.46817 * 59.99873 * 4 2 1 7 7 C 1.53000 * 109.47233 * 179.97438 * 4 2 1 8 8 C 1.50698 * 109.46984 * 175.00062 * 7 4 2 9 9 O 1.21286 * 120.00122 * 0.02562 * 8 7 4 10 10 N 1.34782 * 120.00288 * 180.02562 * 8 7 4 11 11 C 1.46927 * 120.62494 * 359.97438 * 10 8 7 12 12 C 1.53189 * 108.77998 * 233.58694 * 11 10 8 13 13 C 1.53043 * 109.30854 * 305.37231 * 12 11 10 14 14 C 1.53038 * 109.54042 * 61.36446 * 13 12 11 15 15 H 1.08993 * 109.50193 * 58.61748 * 14 13 12 16 16 N 1.46508 * 109.49690 * 178.68312 * 14 13 12 17 17 C 1.36935 * 119.99764 * 274.99676 * 16 14 13 18 18 H 1.07995 * 120.00288 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99979 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99643 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47201 * 89.99950 * 21 19 17 23 23 H 1.48507 * 109.47065 * 209.99778 * 21 19 17 24 24 H 1.48501 * 109.46919 * 329.99460 * 21 19 17 25 25 C 1.46917 * 120.63286 * 179.72104 * 10 8 7 26 26 H 1.08998 * 109.47171 * 59.99399 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 29 29 H 1.09002 * 109.47497 * 240.00226 * 2 1 3 30 30 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46726 * 300.00265 * 3 2 1 32 32 H 1.09002 * 109.46589 * 59.99669 * 3 2 1 33 33 H 1.08998 * 109.47533 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.47853 * 300.00202 * 6 4 2 35 35 H 1.09002 * 109.47153 * 60.00231 * 6 4 2 36 36 H 1.08990 * 109.47170 * 295.00238 * 7 4 2 37 37 H 1.09001 * 109.46952 * 55.00315 * 7 4 2 38 38 H 1.09001 * 109.58977 * 353.38131 * 11 10 8 39 39 H 1.09000 * 109.58464 * 113.79864 * 11 10 8 40 40 H 1.09003 * 109.49731 * 65.31569 * 12 11 10 41 41 H 1.08988 * 109.50085 * 185.38470 * 12 11 10 42 42 H 1.09006 * 109.45576 * 181.38331 * 13 12 11 43 43 H 1.08993 * 109.46015 * 301.35035 * 13 12 11 44 44 H 0.96994 * 119.99937 * 94.99557 * 16 14 13 45 45 H 0.97003 * 119.99652 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.58813 * 246.19719 * 25 10 8 47 47 H 1.09002 * 109.59010 * 6.62723 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 3.5701 -0.7218 1.2489 8 6 4.0724 -1.3222 2.5366 9 8 3.2844 -1.7118 3.3721 10 7 5.3976 -1.4263 2.7598 11 6 6.3645 -0.9592 1.7569 12 6 7.3372 -2.0998 1.4411 13 6 7.9715 -2.5986 2.7414 14 6 6.8804 -3.1373 3.6695 15 1 6.3447 -3.9450 3.1708 16 7 7.4918 -3.6433 4.9010 17 6 7.9793 -4.9221 4.9480 18 1 7.9127 -5.5578 4.0775 19 6 8.5581 -5.4018 6.1149 20 7 8.6388 -4.6272 7.1761 21 14 9.2238 -7.1459 6.1789 22 1 10.6500 -7.1469 5.7655 23 1 9.1096 -7.6688 7.5642 24 1 8.4407 -8.0086 5.2581 25 6 5.9026 -2.0037 4.0128 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8937 -2.6777 2.1389 34 1 0.4401 -2.1638 1.2493 35 1 1.8934 -2.6775 0.3593 36 1 3.9330 -1.3114 0.4071 37 1 3.9337 0.3019 1.1591 38 1 5.8369 -0.6669 0.8490 39 1 6.9170 -0.1065 2.1514 40 1 6.7968 -2.9169 0.9631 41 1 8.1167 -1.7380 0.7708 42 1 8.6825 -3.3938 2.5169 43 1 8.4907 -1.7750 3.2314 44 1 7.5513 -3.0725 5.6829 45 1 9.0437 -4.9622 7.9914 46 1 6.4182 -1.2347 4.5879 47 1 5.0702 -2.4009 4.5937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207644584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = -50.949751 kcal Electronic energy + Delta-G solvation = -23146.150078 eV Core-core repulsion = 19942.106616 eV Total energy + Delta-G solvation = -3204.043462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18329 -37.98574 -36.78232 -34.47127 -32.23514 -31.73002 -31.11453 -29.11627 -28.08632 -26.54720 -24.89856 -23.85088 -22.81184 -22.02789 -20.20719 -19.59838 -18.70146 -17.17772 -17.03718 -15.81430 -15.41123 -15.02569 -14.66092 -14.50103 -14.05258 -13.91553 -13.83549 -13.54616 -13.46327 -12.94019 -12.79416 -12.70093 -12.49241 -12.23383 -11.99386 -11.92356 -11.77388 -11.24286 -11.12541 -10.93704 -10.89472 -10.77999 -10.63530 -10.58013 -10.49104 -10.38911 -10.32683 -10.05655 -9.71463 -9.41806 -8.90846 -8.34049 -6.98308 -5.77465 -3.06974 2.82572 3.18092 3.43428 3.48831 3.50541 4.45861 4.57684 4.59748 4.67363 4.86605 4.92774 4.99636 5.16108 5.25089 5.32092 5.35714 5.41371 5.45700 5.53337 5.55771 5.59378 5.61607 5.69072 5.72495 5.75527 5.77152 5.83187 5.89225 5.92646 6.03042 6.05646 6.14674 6.17781 6.26166 6.34767 6.40015 6.48030 6.57061 6.74709 6.89437 7.05749 7.64915 7.69424 8.38964 8.42072 9.51740 10.07372 10.42452 11.45090 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029951 B = 0.003369 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.638851 B = 8308.638594 C = 8688.922019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.106 3.894 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 12.407 -17.209 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.089 4.089 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.017 4.017 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.176 12.004 -16.754 23.446 hybrid contribution 0.715 -0.735 0.272 1.061 sum -10.461 11.269 -16.483 22.541 Atomic orbital electron populations 1.21878 0.95205 1.01985 1.01479 1.21173 0.95916 0.95967 0.98092 1.21932 1.01091 0.96144 1.01691 1.20934 0.92619 0.97262 0.98053 0.90451 1.22008 1.00743 0.95757 1.02735 1.21855 0.97518 1.02215 0.96183 1.20664 0.81789 0.78807 0.88808 1.90662 1.54555 1.49288 1.47215 1.48164 1.05358 1.61282 1.19319 1.21754 0.91199 0.97114 0.91447 1.21933 0.98320 0.97931 0.99053 1.22280 0.99986 1.00849 0.94660 1.20554 0.91345 0.93292 0.89009 0.93277 1.42319 1.70416 1.13713 1.09807 1.19204 1.31112 0.89457 0.97180 0.91186 1.24750 1.01839 0.98272 0.96006 1.69666 1.50092 1.35793 1.02468 0.86186 0.78778 0.84388 0.76817 1.21728 1.21738 1.20741 1.22055 0.98740 0.96069 0.84848 0.92998 0.92255 0.92705 0.91280 0.92447 0.92872 0.92626 0.90484 0.92779 0.93525 0.89154 0.88951 0.90307 0.91498 0.91901 0.91407 0.91623 0.92512 0.78209 0.93464 0.91866 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 2 C -0.09 -0.74 2.51 -90.62 -0.23 -0.97 16 3 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 4 C -0.07 -0.72 1.62 -90.62 -0.15 -0.87 16 5 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 6 C -0.16 -1.77 8.58 37.16 0.32 -1.45 16 7 C -0.14 -1.41 3.31 -27.88 -0.09 -1.51 16 8 C 0.51 7.54 7.42 -10.98 -0.08 7.46 16 9 O -0.54 -9.99 13.38 5.55 0.07 -9.92 16 10 N -0.61 -8.91 2.97 -172.53 -0.51 -9.42 16 11 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 12 C -0.13 -1.67 6.08 -26.61 -0.16 -1.84 16 13 C -0.14 -2.34 5.46 -26.69 -0.15 -2.48 16 14 C 0.17 3.39 2.94 -67.60 -0.20 3.19 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.16 5.13 -53.11 -0.27 -18.43 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.11 1.90 5.93 -3.51 -0.02 1.88 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 34 H 0.05 0.56 6.43 -51.93 -0.33 0.22 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 37 H 0.09 0.78 5.98 -51.93 -0.31 0.47 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.71 8.14 -51.94 -0.42 0.29 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.38 10.24 7.80 -40.82 -0.32 9.93 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.51 358.11 -8.44 -39.95 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.46 Total: 6.64 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.37 Total: -4.18 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.06 Total: -55.38 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.51 -8.44 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207644584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.002 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds