Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47200 * 120.00361 * 2 1 3 5 5 C 1.53001 * 109.47128 * 175.18846 * 4 2 1 6 6 H 1.09001 * 109.46821 * 55.98045 * 5 4 2 7 7 C 1.53002 * 109.46915 * 175.97696 * 5 4 2 8 8 C 1.50701 * 109.47249 * 295.98059 * 5 4 2 9 9 O 1.21281 * 119.99961 * 351.21848 * 8 5 4 10 10 N 1.34778 * 120.00026 * 171.22080 * 8 5 4 11 11 C 1.46930 * 120.62747 * 356.15041 * 10 8 5 12 12 C 1.53195 * 108.77315 * 233.58873 * 11 10 8 13 13 C 1.53041 * 109.30894 * 305.36624 * 12 11 10 14 14 C 1.53038 * 109.54200 * 61.36910 * 13 12 11 15 15 H 1.08992 * 109.50018 * 58.57881 * 14 13 12 16 16 N 1.46501 * 109.49889 * 178.65073 * 14 13 12 17 17 C 1.36936 * 119.99796 * 274.99611 * 16 14 13 18 18 H 1.07996 * 120.00174 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99845 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99934 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00016 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46983 * 90.00332 * 21 19 17 23 23 H 1.48500 * 109.47066 * 209.99888 * 21 19 17 24 24 H 1.48500 * 109.47323 * 330.00190 * 21 19 17 25 25 C 1.46921 * 120.63159 * 175.87236 * 10 8 5 26 26 H 1.09007 * 109.46863 * 300.00184 * 1 2 3 27 27 H 1.09003 * 109.47016 * 59.99940 * 1 2 3 28 28 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46863 * 239.99816 * 2 1 3 30 30 H 1.09001 * 109.47460 * 185.85484 * 3 2 1 31 31 H 1.09002 * 109.47089 * 305.85378 * 3 2 1 32 32 H 1.09001 * 109.47339 * 65.85606 * 3 2 1 33 33 H 1.08996 * 109.47054 * 55.19027 * 4 2 1 34 34 H 1.09004 * 109.46633 * 295.19254 * 4 2 1 35 35 H 1.08996 * 109.47061 * 175.18077 * 7 5 4 36 36 H 1.08997 * 109.46942 * 55.18249 * 7 5 4 37 37 H 1.09001 * 109.47108 * 295.18052 * 7 5 4 38 38 H 1.08997 * 109.58937 * 353.37249 * 11 10 8 39 39 H 1.08993 * 109.58826 * 113.79999 * 11 10 8 40 40 H 1.09003 * 109.49886 * 65.31153 * 12 11 10 41 41 H 1.08996 * 109.49739 * 185.37996 * 12 11 10 42 42 H 1.09003 * 109.46046 * 181.38650 * 13 12 11 43 43 H 1.09004 * 109.46207 * 301.34051 * 13 12 11 44 44 H 0.96997 * 119.99869 * 95.00106 * 16 14 13 45 45 H 0.97008 * 120.00083 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58559 * 246.19769 * 25 10 8 47 47 H 1.09001 * 109.58208 * 6.62284 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5652 -0.8270 1.1902 6 1 3.9941 0.1684 1.0742 7 6 4.0832 -1.4579 2.4842 8 6 3.9643 -1.6856 0.0178 9 8 3.1192 -2.2944 -0.6035 10 7 5.2604 -1.7771 -0.3403 11 6 6.2853 -0.9808 0.3486 12 6 7.0837 -0.1948 -0.6961 13 6 7.6386 -1.1635 -1.7429 14 6 6.4807 -1.8700 -2.4514 15 1 5.8342 -1.1284 -2.9204 16 7 7.0119 -2.7732 -3.4753 17 6 7.3096 -2.2941 -4.7230 18 1 7.1524 -1.2506 -4.9525 19 6 7.8125 -3.1499 -5.6933 20 7 8.0991 -2.6894 -6.8925 21 14 8.0837 -4.9551 -5.2967 22 1 6.8519 -5.7219 -5.6129 23 1 9.2130 -5.4760 -6.1083 24 1 8.4019 -5.1025 -3.8537 25 6 5.6762 -2.6793 -1.4228 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1250 1.4442 -0.1048 31 1 1.5937 1.9856 -0.8330 32 1 1.7649 1.9251 0.9378 33 1 1.6080 -1.7211 1.2933 34 1 1.7486 -0.1602 2.1371 35 1 5.1595 -1.6118 2.4079 36 1 3.5895 -2.4164 2.6440 37 1 3.8695 -0.7948 3.3226 38 1 5.8060 -0.2875 1.0397 39 1 6.9546 -1.6431 0.8976 40 1 6.4315 0.5311 -1.1818 41 1 7.9077 0.3257 -0.2082 42 1 8.2278 -0.6097 -2.4740 43 1 8.2710 -1.9041 -1.2533 44 1 7.1527 -3.7105 -3.2693 45 1 8.4501 -3.2875 -7.5707 46 1 6.2969 -3.4772 -1.0152 47 1 4.7948 -3.1069 -1.9007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210358826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -47.020414 kcal Electronic energy + Delta-G solvation = -23644.093906 eV Core-core repulsion = 20440.220833 eV Total energy + Delta-G solvation = -3203.873073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43720 -37.84598 -36.27775 -34.74465 -33.18486 -32.01573 -31.36240 -28.85088 -27.27021 -26.74299 -25.56883 -23.92764 -22.57268 -21.86955 -20.38210 -19.83524 -18.61968 -17.64003 -17.31070 -15.84320 -15.28328 -15.09587 -14.71264 -14.46660 -14.11730 -13.90286 -13.68457 -13.62065 -13.37101 -13.06620 -12.73061 -12.65860 -12.51018 -12.35103 -12.29313 -11.96494 -11.82327 -11.53829 -11.34093 -11.06980 -11.01014 -10.72374 -10.69758 -10.59194 -10.53304 -10.46068 -10.31923 -10.08765 -9.60680 -9.45610 -8.93833 -8.42694 -7.29659 -5.77949 -3.14401 2.75531 3.09181 3.37562 3.40979 3.45719 4.40430 4.57050 4.58536 4.72730 4.82841 4.94626 5.08578 5.09921 5.13904 5.20827 5.25427 5.39011 5.43920 5.46539 5.52583 5.54458 5.59442 5.65724 5.70881 5.72778 5.73671 5.79055 5.81930 5.90311 5.93521 6.01952 6.04333 6.11437 6.17222 6.30235 6.31403 6.43617 6.47740 6.63257 6.79854 6.94854 7.56099 7.97160 8.32737 8.40567 9.18287 9.90739 10.09725 11.40225 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.004210 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.913189 B = 6648.782935 C = 6990.077162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.148 4.148 4 C -0.093 4.093 5 C -0.114 4.114 6 H 0.096 0.904 7 C -0.146 4.146 8 C 0.517 3.483 9 O -0.538 6.538 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.174 3.826 15 H 0.059 0.941 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.103 3.897 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.061 0.939 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 6.649 21.720 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.205 4.205 4 C -0.130 4.130 5 C -0.135 4.135 6 H 0.114 0.886 7 C -0.204 4.204 8 C 0.305 3.695 9 O -0.415 6.415 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.077 0.923 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.581 5.581 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.020 4.020 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.973 6.453 21.151 23.865 hybrid contribution 0.524 -1.245 0.109 1.355 sum -8.449 5.208 21.261 23.463 Atomic orbital electron populations 1.21776 0.95424 1.01610 1.01151 1.21239 0.95718 0.95828 0.99651 1.21903 1.00897 0.96358 1.01390 1.21476 0.92351 1.01446 0.97767 1.21418 0.98328 0.99761 0.93982 0.88616 1.21844 1.01580 1.01346 0.95619 1.20611 0.81753 0.82023 0.85073 1.90673 1.49407 1.46698 1.54678 1.48086 1.06639 1.43253 1.35948 1.21855 0.90538 0.94408 0.94908 1.21943 0.99519 0.98575 0.97249 1.22241 0.99891 0.98216 0.97426 1.20533 0.92646 0.92311 0.88189 0.92341 1.42678 1.78318 1.07339 1.10478 1.19033 1.35887 0.96299 0.86094 0.89194 1.24658 1.01117 0.97566 0.95602 1.69700 1.50240 1.34704 1.03417 0.86563 0.77785 0.86849 0.77402 1.20973 1.21719 1.20336 1.22067 1.00282 0.91990 0.87709 0.93219 0.92917 0.92707 0.89539 0.92897 0.92797 0.92995 0.91072 0.91645 0.91792 0.92074 0.91551 0.89961 0.91512 0.91689 0.91219 0.91123 0.92631 0.80623 0.93020 0.92042 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.11 -1.18 2.71 -90.62 -0.25 -1.43 16 3 C -0.15 -1.43 8.80 37.15 0.33 -1.10 16 4 C -0.09 -0.94 3.81 -26.73 -0.10 -1.04 16 5 C -0.11 -1.15 1.73 -91.77 -0.16 -1.30 16 6 H 0.10 0.85 5.40 -51.93 -0.28 0.57 16 7 C -0.15 -1.17 8.83 37.16 0.33 -0.85 16 8 C 0.52 7.36 6.48 -10.98 -0.07 7.29 16 9 O -0.54 -9.66 13.73 5.56 0.08 -9.59 16 10 N -0.61 -8.44 2.97 -172.51 -0.51 -8.95 16 11 C 0.11 1.13 5.00 -3.71 -0.02 1.11 16 12 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 13 C -0.14 -2.25 5.46 -26.69 -0.15 -2.40 16 14 C 0.17 3.34 2.93 -67.59 -0.20 3.14 16 15 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 16 N -0.75 -17.62 4.93 -53.09 -0.26 -17.88 16 17 C -0.24 -6.86 10.41 -15.06 -0.16 -7.01 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 21 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 25 C 0.10 1.73 5.94 -3.49 -0.02 1.71 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.26 6.11 -51.93 -0.32 0.94 16 30 H 0.05 0.51 6.76 -51.93 -0.35 0.16 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.68 5.07 -51.93 -0.26 0.41 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 1.78 7.00 -51.93 -0.36 1.41 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -32.41 355.41 -8.12 -40.53 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.46 Total: 6.29 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.00 Total: -55.43 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.41 -8.12 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210358826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.488 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds