Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47652 * 2 1 4 4 C 1.53007 * 109.46710 * 119.99765 * 2 1 3 5 5 C 1.53003 * 109.46915 * 174.99691 * 4 2 1 6 6 H 1.09001 * 109.46884 * 55.00110 * 5 4 2 7 7 C 1.53004 * 109.47181 * 295.00150 * 5 4 2 8 8 C 1.50700 * 109.47203 * 175.00200 * 5 4 2 9 9 O 1.21277 * 120.00052 * 23.88303 * 8 5 4 10 10 N 1.34777 * 120.00007 * 203.88992 * 8 5 4 11 11 C 1.46922 * 120.63076 * 175.41289 * 10 8 5 12 12 C 1.53192 * 108.77815 * 233.62986 * 11 10 8 13 13 C 1.53039 * 109.31122 * 305.36708 * 12 11 10 14 14 C 1.53351 * 109.60870 * 61.37664 * 13 12 11 15 15 H 1.08996 * 109.48079 * 58.54501 * 14 13 12 16 16 N 1.46501 * 109.68433 * 178.74899 * 14 13 12 17 17 C 1.36939 * 119.99572 * 274.74443 * 16 14 13 18 18 H 1.08001 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.38808 * 119.99757 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00183 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46896 * 120.00055 * 21 19 17 24 24 H 1.48500 * 109.47216 * 239.99987 * 21 19 17 25 25 C 1.46925 * 120.62854 * 355.43982 * 10 8 5 26 26 H 1.09007 * 109.46489 * 300.00484 * 1 2 3 27 27 H 1.08996 * 109.46649 * 59.99678 * 1 2 3 28 28 H 1.08997 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46775 * 239.99185 * 2 1 3 30 30 H 1.08998 * 109.47442 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46784 * 300.00125 * 3 2 1 32 32 H 1.09002 * 109.47224 * 59.99521 * 3 2 1 33 33 H 1.08997 * 109.47236 * 55.00160 * 4 2 1 34 34 H 1.08997 * 109.47532 * 294.99530 * 4 2 1 35 35 H 1.09000 * 109.47054 * 66.32439 * 7 5 4 36 36 H 1.08998 * 109.47052 * 186.32875 * 7 5 4 37 37 H 1.09003 * 109.46571 * 306.32981 * 7 5 4 38 38 H 1.08997 * 109.58888 * 353.42147 * 11 10 8 39 39 H 1.08997 * 109.58328 * 113.84188 * 11 10 8 40 40 H 1.09002 * 109.49841 * 65.31803 * 12 11 10 41 41 H 1.09000 * 109.49647 * 185.38353 * 12 11 10 42 42 H 1.09003 * 109.46022 * 181.38334 * 13 12 11 43 43 H 1.08993 * 109.46169 * 301.35328 * 13 12 11 44 44 H 0.97002 * 120.00571 * 94.75117 * 16 14 13 45 45 H 0.97004 * 120.00324 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58234 * 246.15679 * 25 10 8 47 47 H 1.08995 * 109.59152 * 6.43766 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 1 3.9954 0.1610 1.0528 7 6 3.9649 -1.7254 0.0128 8 6 4.0773 -1.4304 2.4724 9 8 3.3490 -2.1225 3.1516 10 7 5.3449 -1.1969 2.8662 11 6 5.8287 -1.6899 4.1629 12 6 6.4230 -0.5153 4.9465 13 6 7.4941 0.1706 4.0954 14 6 6.8587 0.7185 2.8118 15 1 6.0663 1.4211 3.0697 16 7 7.8768 1.4015 2.0098 17 6 8.1759 2.7147 2.2572 18 1 7.6614 3.2468 3.0438 19 6 9.1401 3.3620 1.4970 20 7 9.7666 2.7138 0.5381 21 14 9.5486 5.1533 1.8349 22 1 8.7110 5.6489 2.9565 23 1 10.9834 5.2737 2.1985 24 1 9.2767 5.9610 0.6188 25 6 6.2690 -0.4441 2.0072 26 1 -0.3632 0.5140 0.8900 27 1 -0.3632 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6053 -1.7198 1.2953 34 1 1.7517 -0.1583 2.1371 35 1 3.6936 -1.2378 -0.9235 36 1 5.0413 -1.8952 0.0355 37 1 3.4447 -2.6802 0.0893 38 1 4.9986 -2.1202 4.7231 39 1 6.5957 -2.4476 4.0027 40 1 5.6349 0.1991 5.1845 41 1 6.8713 -0.8833 5.8693 42 1 7.9358 0.9917 4.6601 43 1 8.2693 -0.5506 3.8369 44 1 8.3390 0.9236 1.3035 45 1 10.4408 3.1660 0.0071 46 1 7.0720 -1.1003 1.6711 47 1 5.7300 -0.0545 1.1436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210358828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -53.822104 kcal Electronic energy + Delta-G solvation = -23558.144985 eV Core-core repulsion = 20353.976969 eV Total energy + Delta-G solvation = -3204.168017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26498 -37.71862 -36.68324 -34.31078 -33.15390 -31.89259 -31.17903 -28.28702 -27.21318 -26.72184 -25.54800 -23.82298 -23.37066 -21.63535 -20.19272 -19.50237 -18.62055 -17.26836 -17.10051 -15.75656 -15.48214 -15.00773 -14.64432 -14.30646 -14.05491 -13.96292 -13.59264 -13.52381 -13.34445 -13.06366 -12.82127 -12.65425 -12.34765 -12.22059 -12.12909 -11.93346 -11.50330 -11.28206 -11.13079 -10.97713 -10.93292 -10.73755 -10.70702 -10.55510 -10.44611 -10.42240 -10.36131 -10.09326 -9.75141 -9.41602 -8.96471 -8.38093 -7.05631 -5.84433 -3.14234 2.80458 3.17367 3.38734 3.45357 3.46846 4.45951 4.58576 4.69019 4.81965 4.97882 5.08862 5.14982 5.24969 5.28045 5.32097 5.38154 5.46570 5.53951 5.55679 5.58543 5.62905 5.69502 5.76792 5.78673 5.82920 5.85976 5.88336 5.96324 5.99559 6.04196 6.11745 6.12654 6.17170 6.33700 6.35528 6.37215 6.39803 6.43681 6.74244 6.80592 6.98821 7.60729 7.65408 8.32878 8.36421 9.45209 9.99343 10.34535 11.37960 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004877 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.126210 B = 5739.611440 C = 7007.455767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.093 4.093 5 C -0.116 4.116 6 H 0.100 0.900 7 C -0.142 4.142 8 C 0.521 3.479 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.132 4.132 13 C -0.137 4.137 14 C 0.167 3.833 15 H 0.051 0.949 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.098 3.902 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -8.026 0.458 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.210 4.210 4 C -0.131 4.131 5 C -0.137 4.137 6 H 0.118 0.882 7 C -0.199 4.199 8 C 0.310 3.690 9 O -0.433 6.433 10 N -0.337 5.337 11 C -0.010 4.010 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.056 3.944 15 H 0.069 0.931 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.025 4.025 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.587 -8.202 0.863 15.894 hybrid contribution 0.731 0.949 -0.021 1.198 sum -12.856 -7.253 0.842 14.784 Atomic orbital electron populations 1.21824 0.95357 1.01537 1.01610 1.21183 0.95569 0.96555 0.98413 1.21928 1.01674 0.95701 1.01667 1.21466 0.92539 1.01279 0.97800 1.21424 0.97753 1.01274 0.93258 0.88160 1.21785 1.01883 0.99377 0.96901 1.20674 0.80970 0.80185 0.87165 1.90631 1.56488 1.39449 1.56698 1.48133 1.11409 1.54675 1.19514 1.21582 0.99197 0.96224 0.84020 1.21924 0.99299 0.97481 0.98383 1.22323 0.97360 0.99978 0.98146 1.20546 0.91826 0.91600 0.90422 0.93106 1.42319 1.43819 1.10387 1.39716 1.19244 1.16754 0.87160 1.13914 0.91093 1.24727 0.99265 0.98248 0.98387 1.69660 1.28853 1.36022 1.23393 0.86145 0.77869 0.84950 0.77388 1.20535 1.21831 1.21799 1.22208 0.92781 0.93956 0.93583 0.92767 0.92823 0.92822 0.90881 0.92029 0.92825 0.92696 0.91123 0.91743 0.91195 0.92018 0.92158 0.89621 0.91869 0.92009 0.91457 0.91629 0.92513 0.78206 0.93478 0.91387 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 37.16 0.34 -0.95 16 2 C -0.10 -0.98 2.78 -90.62 -0.25 -1.23 16 3 C -0.15 -1.59 8.95 37.16 0.33 -1.26 16 4 C -0.09 -1.09 3.58 -26.73 -0.10 -1.19 16 5 C -0.12 -1.46 1.73 -91.77 -0.16 -1.62 16 6 H 0.10 1.29 4.74 -51.93 -0.25 1.04 16 7 C -0.14 -1.56 8.53 37.16 0.32 -1.25 16 8 C 0.52 8.00 6.81 -10.99 -0.07 7.92 16 9 O -0.55 -9.94 15.61 5.56 0.09 -9.86 16 10 N -0.60 -9.04 2.97 -172.77 -0.51 -9.56 16 11 C 0.11 1.58 6.42 -3.71 -0.02 1.55 16 12 C -0.13 -1.86 6.08 -26.61 -0.16 -2.02 16 13 C -0.14 -2.34 5.49 -26.53 -0.15 -2.49 16 14 C 0.17 3.11 2.94 -67.65 -0.20 2.91 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -16.88 5.13 -53.15 -0.27 -17.15 16 17 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 21 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.10 1.53 5.21 -3.71 -0.02 1.51 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.69 6.48 -51.93 -0.34 0.35 16 30 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.67 6.77 -51.93 -0.35 0.32 16 36 H 0.06 0.70 7.34 -51.93 -0.38 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.24 7.03 -51.93 -0.37 0.87 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.38 9.50 7.80 -40.82 -0.32 9.19 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.31 5.13 -51.93 -0.27 1.05 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -29.59 360.65 -8.43 -38.02 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.48 Total: 7.64 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.96 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.06 Total: -52.98 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.59 -8.43 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210358828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.799 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds