Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 C 1.53000 * 109.47089 * 119.99984 * 2 1 3 5 5 C 1.52992 * 109.47351 * 175.00110 * 4 2 1 6 6 H 1.09007 * 109.47232 * 54.99712 * 5 4 2 7 7 C 1.53000 * 109.47302 * 294.99657 * 5 4 2 8 8 C 1.50700 * 109.47381 * 174.99864 * 5 4 2 9 9 O 1.21280 * 120.00047 * 95.34320 * 8 5 4 10 10 N 1.34785 * 120.00021 * 275.34410 * 8 5 4 11 11 C 1.46924 * 120.62808 * 355.32399 * 10 8 5 12 12 C 1.53185 * 108.77795 * 126.36926 * 11 10 8 13 13 C 1.53044 * 109.31591 * 54.62928 * 12 11 10 14 14 C 1.53039 * 109.53574 * 298.64168 * 13 12 11 15 15 H 1.09008 * 109.49693 * 301.37119 * 14 13 12 16 16 N 1.46501 * 109.49808 * 181.31588 * 14 13 12 17 17 C 1.36942 * 120.00180 * 84.99144 * 16 14 13 18 18 H 1.07994 * 119.99919 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99841 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00345 * 359.72589 * 19 17 16 21 21 Si 1.86798 * 119.99792 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47320 * 60.00105 * 21 19 17 23 23 H 1.48509 * 109.47129 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47041 * 299.99642 * 21 19 17 25 25 C 1.46920 * 120.62800 * 175.29508 * 10 8 5 26 26 H 1.08995 * 109.47393 * 300.00220 * 1 2 3 27 27 H 1.09001 * 109.46776 * 60.00526 * 1 2 3 28 28 H 1.08998 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47176 * 239.99402 * 2 1 3 30 30 H 1.09001 * 109.46932 * 299.99378 * 3 2 1 31 31 H 1.08995 * 109.47233 * 59.99681 * 3 2 1 32 32 H 1.09006 * 109.46919 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47160 * 54.99598 * 4 2 1 34 34 H 1.09005 * 109.46650 * 295.00407 * 4 2 1 35 35 H 1.08991 * 109.47121 * 305.14332 * 7 5 4 36 36 H 1.09001 * 109.46815 * 65.14142 * 7 5 4 37 37 H 1.09002 * 109.47437 * 185.13753 * 7 5 4 38 38 H 1.09004 * 109.58953 * 6.57407 * 11 10 8 39 39 H 1.09004 * 109.58385 * 246.15129 * 11 10 8 40 40 H 1.09004 * 109.49606 * 294.68384 * 12 11 10 41 41 H 1.08999 * 109.50153 * 174.58312 * 12 11 10 42 42 H 1.08990 * 109.46150 * 178.61510 * 13 12 11 43 43 H 1.09000 * 109.44432 * 58.64938 * 13 12 11 44 44 H 0.97003 * 119.99858 * 264.99791 * 16 14 13 45 45 H 0.96991 * 120.00188 * 180.02562 * 20 19 17 46 46 H 1.09008 * 109.58572 * 113.84940 * 25 10 8 47 47 H 1.09000 * 109.59027 * 353.41873 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1612 1.0528 7 6 3.9650 -1.7252 0.0128 8 6 4.0773 -1.4302 2.4723 9 8 4.2896 -2.6222 2.5430 10 7 4.2996 -0.6414 3.5424 11 6 4.1452 0.8163 3.4428 12 6 3.1889 1.2872 4.5430 13 6 3.7005 0.8006 5.9008 14 6 3.7378 -0.7293 5.9153 15 1 2.7387 -1.1194 5.7209 16 7 4.1978 -1.1948 7.2260 17 6 3.3044 -1.3378 8.2541 18 1 2.2608 -1.1079 8.0985 19 6 3.7404 -1.7784 9.4961 20 7 5.0114 -2.0638 9.6843 21 14 2.5217 -1.9741 10.8982 22 1 1.4790 -2.9592 10.5139 23 1 3.2340 -2.4538 12.1098 24 1 1.8836 -0.6645 11.1858 25 6 4.7003 -1.2231 4.8307 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6053 -1.7197 1.2952 34 1 1.7515 -0.1583 2.1370 35 1 3.4612 -2.6877 0.1006 36 1 3.6747 -1.2472 -0.9227 37 1 5.0442 -1.8777 0.0233 38 1 3.7347 1.0744 2.4666 39 1 5.1154 1.2961 3.5720 40 1 2.1951 0.8780 4.3608 41 1 3.1404 2.3761 4.5414 42 1 3.0351 1.1551 6.6878 43 1 4.7043 1.1899 6.0711 44 1 5.1351 -1.4016 7.3657 45 1 5.3160 -2.3720 10.5521 46 1 5.7158 -0.9095 5.0731 47 1 4.6560 -2.3105 4.7703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210358829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -51.724347 kcal Electronic energy + Delta-G solvation = -23526.487062 eV Core-core repulsion = 20322.410011 eV Total energy + Delta-G solvation = -3204.077051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30114 -37.68864 -36.86884 -34.45232 -32.73913 -32.04917 -31.18681 -28.40934 -27.43077 -26.83833 -25.45455 -24.13631 -22.76850 -22.03418 -20.10275 -19.75769 -18.46603 -17.33973 -17.17480 -15.90199 -15.47756 -15.11265 -14.61536 -14.31821 -14.05008 -13.84582 -13.73875 -13.53940 -13.42652 -13.07933 -12.89916 -12.69076 -12.48292 -12.33900 -12.14021 -11.92262 -11.66291 -11.44070 -11.06787 -11.00513 -10.93388 -10.89156 -10.73394 -10.66472 -10.54853 -10.40551 -10.33273 -10.09636 -9.71248 -9.38109 -8.90368 -8.35035 -6.98380 -5.77134 -3.06822 2.79187 3.18312 3.44189 3.48694 3.49625 4.40341 4.57669 4.59342 4.64065 4.81999 4.87731 4.93309 5.12780 5.17225 5.23969 5.32190 5.39316 5.40460 5.53711 5.53756 5.58540 5.61654 5.66211 5.75132 5.75500 5.77247 5.79466 5.81609 5.88738 5.99010 6.04607 6.07315 6.15612 6.17459 6.23530 6.27361 6.40552 6.56438 6.74231 6.89581 7.05681 7.64546 7.68975 8.38249 8.41821 9.51906 10.07462 10.42577 11.45361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.003853 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.498522 B = 7265.174650 C = 7553.365926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.105 4.105 5 C -0.112 4.112 6 H 0.093 0.907 7 C -0.133 4.133 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.106 3.894 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 8.921 -21.301 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.209 4.209 4 C -0.143 4.143 5 C -0.133 4.133 6 H 0.111 0.889 7 C -0.191 4.191 8 C 0.303 3.697 9 O -0.420 6.420 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.017 4.017 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.762 8.237 -21.113 23.158 hybrid contribution -0.293 0.012 1.053 1.093 sum -5.055 8.249 -20.060 22.271 Atomic orbital electron populations 1.21837 0.95104 1.01844 1.01746 1.21153 0.95770 0.96276 0.98266 1.21935 1.01083 0.95976 1.01906 1.21617 0.92515 1.01641 0.98511 1.21409 0.97529 1.00891 0.93502 0.88914 1.21664 1.01824 0.99734 0.95862 1.20647 0.77339 0.86734 0.84982 1.90684 1.52040 1.15506 1.83748 1.48132 1.67914 1.06997 1.10788 1.21833 1.00003 0.80229 0.99755 1.21934 0.98964 1.00248 0.96003 1.22278 1.01100 0.99419 0.94969 1.20471 0.96115 0.91689 0.85922 0.93322 1.42310 1.08924 1.79219 1.05782 1.19159 0.90686 1.37634 0.89603 0.91237 1.24742 0.96145 1.02031 0.97838 1.69649 1.13430 1.51429 1.23514 0.86266 0.80160 0.77816 0.81926 1.21226 1.21660 1.21269 1.21982 0.98245 1.00047 0.81439 0.92562 0.92770 0.92651 0.90777 0.92762 0.92410 0.92489 0.91119 0.91201 0.91624 0.92040 0.92484 0.90009 0.91529 0.91895 0.91424 0.91605 0.92509 0.78196 0.93400 0.91844 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.73 2.78 -90.62 -0.25 -0.98 16 3 C -0.15 -1.00 8.95 37.16 0.33 -0.67 16 4 C -0.10 -1.03 3.99 -26.74 -0.11 -1.13 16 5 C -0.11 -1.20 1.75 -91.78 -0.16 -1.36 16 6 H 0.09 0.82 4.49 -51.92 -0.23 0.59 16 7 C -0.13 -1.36 8.26 37.16 0.31 -1.05 16 8 C 0.52 7.90 6.81 -10.98 -0.07 7.82 16 9 O -0.54 -10.58 15.63 5.56 0.09 -10.49 16 10 N -0.61 -9.06 2.97 -172.77 -0.51 -9.58 16 11 C 0.10 1.21 6.25 -3.72 -0.02 1.18 16 12 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 13 C -0.14 -2.34 5.47 -26.69 -0.15 -2.49 16 14 C 0.17 3.40 2.92 -67.81 -0.20 3.20 16 15 H 0.05 1.05 8.08 -51.92 -0.42 0.63 16 16 N -0.72 -18.19 5.13 -53.31 -0.27 -18.46 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.11 1.93 5.89 -3.72 -0.02 1.91 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.54 6.46 -51.93 -0.34 0.20 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.36 6.46 -51.93 -0.34 0.02 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.34 16 36 H 0.06 0.48 6.71 -51.93 -0.35 0.13 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.73 5.27 -51.93 -0.27 0.46 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.96 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 47 H 0.09 1.90 7.03 -51.93 -0.37 1.53 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -31.86 361.78 -8.46 -40.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.50 Total: 6.20 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.41 Total: -3.38 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.06 Total: -55.57 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.86 -8.46 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210358829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.402 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds