Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99905 * 2 1 3 5 5 H 1.08993 * 109.47218 * 299.99925 * 4 2 1 6 6 C 1.53000 * 109.47173 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47008 * 60.00449 * 4 2 1 8 8 C 1.50707 * 109.47161 * 185.00139 * 7 4 2 9 9 O 1.21277 * 119.99616 * 359.97438 * 8 7 4 10 10 N 1.34773 * 119.99820 * 179.97438 * 8 7 4 11 11 C 1.46501 * 119.99851 * 179.97438 * 10 8 7 12 12 C 1.53039 * 109.46238 * 275.02881 * 11 10 8 13 13 C 1.53190 * 109.31625 * 178.59946 * 12 11 10 14 14 N 1.46929 * 108.76351 * 54.65327 * 13 12 11 15 15 C 1.36933 * 120.62742 * 126.36421 * 14 13 12 16 16 H 1.08001 * 119.99861 * 208.01888 * 15 14 13 17 17 C 1.38814 * 120.00347 * 28.02276 * 15 14 13 18 18 N 1.31610 * 119.99855 * 17.52134 * 17 15 14 19 19 Si 1.86800 * 119.99934 * 197.52304 * 17 15 14 20 20 H 1.48501 * 109.46919 * 94.06571 * 19 17 15 21 21 H 1.48493 * 109.46967 * 214.06211 * 19 17 15 22 22 H 1.48501 * 109.47409 * 334.06842 * 19 17 15 23 23 C 1.46930 * 118.73812 * 306.38207 * 14 13 12 24 24 C 1.53044 * 109.46158 * 154.97054 * 11 10 8 25 25 H 1.08993 * 109.46988 * 300.00028 * 1 2 3 26 26 H 1.09000 * 109.46693 * 60.00191 * 1 2 3 27 27 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47402 * 240.00252 * 2 1 3 29 29 H 1.09005 * 109.47039 * 299.99979 * 3 2 1 30 30 H 1.08997 * 109.47086 * 59.99613 * 3 2 1 31 31 H 1.09003 * 109.47321 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47377 * 180.02562 * 6 4 2 33 33 H 1.09004 * 109.47402 * 300.00347 * 6 4 2 34 34 H 1.09004 * 109.47343 * 59.99725 * 6 4 2 35 35 H 1.08997 * 109.47926 * 64.99602 * 7 4 2 36 36 H 1.09006 * 109.46848 * 304.99787 * 7 4 2 37 37 H 0.96998 * 120.00228 * 0.26788 * 10 8 7 38 38 H 1.09001 * 109.45978 * 34.99899 * 11 10 8 39 39 H 1.09003 * 109.49202 * 298.56667 * 12 11 10 40 40 H 1.09004 * 109.49527 * 58.65788 * 12 11 10 41 41 H 1.08999 * 109.60000 * 294.86833 * 13 12 11 42 42 H 1.08994 * 109.70478 * 174.50171 * 13 12 11 43 43 H 0.96996 * 120.00159 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.59052 * 293.82105 * 23 14 13 45 45 H 1.09003 * 109.69907 * 173.46525 * 23 14 13 46 46 H 1.08995 * 109.49655 * 301.33881 * 24 11 10 47 47 H 1.09001 * 109.49275 * 61.40225 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2496 7 6 1.5301 -2.1637 1.2492 8 6 1.9288 -2.8375 2.5370 9 8 2.5591 -2.2244 3.3722 10 7 1.5848 -4.1213 2.7603 11 6 1.9728 -4.7765 4.0119 12 6 3.3922 -5.3328 3.8775 13 6 3.8076 -5.9862 5.1993 14 7 2.7991 -6.9891 5.5682 15 6 3.1660 -8.2797 5.8415 16 1 2.4698 -9.0871 5.6689 17 6 4.4328 -8.5503 6.3405 18 7 5.1508 -7.5840 6.8723 19 14 5.1183 -10.2860 6.2573 20 1 5.9362 -10.4366 5.0270 21 1 5.9660 -10.5410 7.4495 22 1 3.9977 -11.2600 6.2290 23 6 1.3893 -6.5808 5.6378 24 6 1.0012 -5.9204 4.3111 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 0.0005 32 1 3.9334 -1.2349 2.1393 33 1 3.9338 -1.2342 0.3596 34 1 3.9330 0.3071 1.2497 35 1 1.9647 -2.7028 0.4074 36 1 0.4438 -2.1650 1.1596 37 1 1.0841 -4.6128 2.0906 38 1 1.9424 -4.0519 4.8257 39 1 3.4177 -6.0757 3.0803 40 1 4.0802 -4.5210 3.6412 41 1 3.8700 -5.2270 5.9788 42 1 4.7774 -6.4696 5.0815 43 1 6.0361 -7.7729 7.2207 44 1 1.2545 -5.8700 6.4530 45 1 0.7615 -7.4555 5.8080 46 1 -0.0127 -5.5270 4.3835 47 1 1.0492 -6.6575 3.5095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226535771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -47.451901 kcal Electronic energy + Delta-G solvation = -23012.823423 eV Core-core repulsion = 19808.931639 eV Total energy + Delta-G solvation = -3203.891784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.92658 -37.88867 -36.85012 -34.36215 -32.22245 -31.57715 -30.08624 -29.60652 -28.53185 -26.50727 -24.87060 -23.20619 -22.22548 -21.77595 -20.15325 -19.69313 -19.16368 -17.08186 -16.56578 -15.96778 -15.26487 -14.91845 -14.67620 -14.56292 -13.94735 -13.86693 -13.63994 -13.49641 -13.07126 -12.83492 -12.69014 -12.51323 -12.38206 -12.02532 -11.92618 -11.79056 -11.47020 -11.23299 -11.12307 -10.90088 -10.77281 -10.73965 -10.59887 -10.55647 -10.35682 -10.20975 -10.03866 -9.74684 -9.70100 -9.31143 -8.65283 -8.40244 -6.67979 -5.77735 -3.20674 2.88774 3.37826 3.45136 3.45185 3.46798 4.50093 4.57835 4.59194 4.70030 4.93093 5.06748 5.25221 5.32554 5.37950 5.40821 5.44297 5.46798 5.48015 5.57517 5.62456 5.65599 5.71640 5.74244 5.85424 5.88641 5.92474 6.02931 6.09562 6.14950 6.25628 6.34165 6.37683 6.45252 6.52309 6.64055 6.66427 6.79116 6.93788 6.98828 7.38695 7.68522 7.80220 7.80590 8.45690 8.51555 9.21736 9.85148 10.42075 11.30805 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037016 B = 0.003151 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.253776 B = 8884.696406 C = 9251.927667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.069 4.069 5 H 0.077 0.923 6 C -0.156 4.156 7 C -0.141 4.141 8 C 0.508 3.492 9 O -0.538 6.538 10 N -0.728 5.728 11 C 0.150 3.850 12 C -0.145 4.145 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.148 3.852 24 C -0.138 4.138 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.393 0.607 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 13.018 -14.858 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.213 4.213 7 C -0.181 4.181 8 C 0.294 3.706 9 O -0.415 6.415 10 N -0.378 5.378 11 C 0.047 3.953 12 C -0.186 4.186 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.021 3.979 24 C -0.178 4.178 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.226 0.774 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.576 13.434 -14.140 21.306 hybrid contribution 0.161 -1.159 -0.429 1.246 sum -8.415 12.274 -14.568 20.826 Atomic orbital electron populations 1.21931 0.95486 1.01764 1.01679 1.21178 0.95512 0.96368 0.98118 1.21882 1.01396 0.95805 1.01475 1.20908 0.96523 0.93330 0.98013 0.90454 1.22012 0.94721 1.01791 1.02735 1.21854 1.02740 0.97245 0.96247 1.20654 0.79381 0.81831 0.88723 1.90671 1.39525 1.64379 1.46927 1.46377 1.57625 1.12511 1.21277 1.21011 0.95245 0.93815 0.85235 1.22544 0.94952 0.99216 1.01853 1.20749 0.94339 0.90399 0.89779 1.44105 1.00511 1.07841 1.79088 1.19192 0.99049 0.83321 1.36859 0.91625 1.25062 0.99287 0.97317 0.97981 1.70041 1.11935 1.31517 1.40979 0.86276 0.78925 0.84401 0.77165 1.21496 1.21771 1.20397 1.20833 0.87742 0.96878 0.92423 1.22329 0.97079 0.97027 1.01408 0.92625 0.92896 0.92442 0.91310 0.93010 0.92700 0.92248 0.90424 0.93561 0.92791 0.89280 0.89024 0.77350 0.90157 0.92790 0.92930 0.96192 0.89347 0.93588 0.96249 0.92389 0.92723 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 2 C -0.09 -0.75 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.14 8.84 37.16 0.33 -0.82 16 4 C -0.07 -0.71 1.62 -90.62 -0.15 -0.86 16 5 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 6 C -0.16 -1.78 8.58 37.16 0.32 -1.46 16 7 C -0.14 -1.41 4.96 -27.88 -0.14 -1.54 16 8 C 0.51 7.24 7.51 -10.98 -0.08 7.16 16 9 O -0.54 -9.85 13.63 5.56 0.08 -9.77 16 10 N -0.73 -10.07 5.08 -53.76 -0.27 -10.34 16 11 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 12 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 13 C 0.17 4.27 5.31 -3.71 -0.02 4.25 16 14 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 15 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -26.50 11.22 55.49 0.62 -25.88 16 19 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.15 3.08 6.51 -3.71 -0.02 3.05 16 24 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 32 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.74 6.17 -51.93 -0.32 0.42 16 37 H 0.39 4.25 8.61 -40.82 -0.35 3.90 16 38 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -31.13 358.10 -8.63 -39.76 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.56 Total: 1.71 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.35 Total: -2.16 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.17 Total: -51.65 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.13 -8.63 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226535771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.690 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds