Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46786 * 2 1 4 4 C 1.52998 * 109.47459 * 239.99999 * 2 1 3 5 5 H 1.09000 * 109.47056 * 59.99885 * 4 2 1 6 6 C 1.52994 * 109.47353 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.46851 * 299.99895 * 4 2 1 8 8 C 1.50700 * 109.46947 * 174.99813 * 7 4 2 9 9 O 1.21285 * 119.99977 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00219 * 179.97438 * 8 7 4 11 11 C 1.46505 * 120.00323 * 179.97438 * 10 8 7 12 12 C 1.53034 * 109.46167 * 275.03000 * 11 10 8 13 13 C 1.53199 * 109.31222 * 178.59955 * 12 11 10 14 14 N 1.46923 * 108.76289 * 54.65617 * 13 12 11 15 15 C 1.36934 * 120.63060 * 126.36409 * 14 13 12 16 16 H 1.07997 * 119.99800 * 331.85968 * 15 14 13 17 17 C 1.38814 * 119.99902 * 151.85886 * 15 14 13 18 18 N 1.31616 * 120.00370 * 343.06326 * 17 15 14 19 19 Si 1.86799 * 119.99631 * 163.06273 * 17 15 14 20 20 H 1.48500 * 109.47416 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47242 * 120.00438 * 19 17 15 22 22 H 1.48504 * 109.47185 * 240.00136 * 19 17 15 23 23 C 1.46930 * 118.73951 * 306.38334 * 14 13 12 24 24 C 1.53035 * 109.45945 * 154.97279 * 11 10 8 25 25 H 1.09000 * 109.47081 * 60.00101 * 1 2 3 26 26 H 1.08996 * 109.46867 * 299.99682 * 1 2 3 27 27 H 1.08998 * 109.46428 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47563 * 119.99733 * 2 1 3 29 29 H 1.09002 * 109.47459 * 59.99845 * 3 2 1 30 30 H 1.08994 * 109.47447 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47228 * 299.99809 * 3 2 1 32 32 H 1.08996 * 109.47504 * 180.02562 * 6 4 2 33 33 H 1.09005 * 109.47435 * 300.00199 * 6 4 2 34 34 H 1.08997 * 109.47266 * 59.99981 * 6 4 2 35 35 H 1.08997 * 109.47018 * 294.99540 * 7 4 2 36 36 H 1.08995 * 109.47402 * 54.99893 * 7 4 2 37 37 H 0.96998 * 120.00090 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.45338 * 35.00597 * 11 10 8 39 39 H 1.08999 * 109.49736 * 298.56146 * 12 11 10 40 40 H 1.09003 * 109.49812 * 58.66144 * 12 11 10 41 41 H 1.08999 * 109.59756 * 294.86816 * 13 12 11 42 42 H 1.08999 * 109.70061 * 174.50602 * 13 12 11 43 43 H 0.97001 * 119.99905 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.58722 * 293.82409 * 23 14 13 45 45 H 1.09003 * 109.70556 * 173.47006 * 23 14 13 46 46 H 1.09003 * 109.50001 * 301.34167 * 24 11 10 47 47 H 1.08996 * 109.49942 * 61.40286 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6768 -0.2074 -2.1392 6 6 3.5700 -0.7207 -1.2495 7 6 1.5301 -2.1637 -1.2491 8 6 1.9289 -2.8374 -2.5368 9 8 2.5585 -2.2241 -3.3725 10 7 1.5858 -4.1216 -2.7598 11 6 1.9729 -4.7764 -4.0119 12 6 0.9354 -4.4642 -5.0926 13 6 1.3615 -5.1215 -6.4092 14 7 1.5745 -6.5561 -6.1739 15 6 0.9367 -7.4916 -6.9442 16 1 -0.0187 -7.2618 -7.3922 17 6 1.5183 -8.7352 -7.1491 18 7 2.7987 -8.9120 -6.9007 19 14 0.4837 -10.1579 -7.7774 20 1 -0.9153 -9.7021 -7.9777 21 1 1.0365 -10.6396 -9.0688 22 1 0.5075 -11.2631 -6.7858 23 6 2.4843 -6.9679 -5.0962 24 6 2.0457 -6.2895 -3.7946 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.9334 -1.2340 -2.1396 33 1 3.9331 0.3072 -1.2497 34 1 3.9337 -1.2342 -0.3595 35 1 1.9648 -2.7027 -0.4074 36 1 0.4439 -2.1651 -1.1596 37 1 1.0826 -4.6123 -2.0914 38 1 2.9487 -4.4076 -4.3279 39 1 -0.0357 -4.8548 -4.7884 40 1 0.8670 -3.3851 -5.2304 41 1 2.2878 -4.6676 -6.7614 42 1 0.5805 -4.9858 -7.1573 43 1 3.2050 -9.7812 -7.0436 44 1 3.5022 -6.6645 -5.3414 45 1 2.4448 -8.0505 -4.9755 46 1 2.7678 -6.5099 -3.0083 47 1 1.0643 -6.6627 -3.5021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226535775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -47.931371 kcal Electronic energy + Delta-G solvation = -22963.296485 eV Core-core repulsion = 19759.383910 eV Total energy + Delta-G solvation = -3203.912575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94484 -37.89928 -36.86091 -34.36945 -32.23596 -31.57823 -30.17528 -29.54517 -28.54367 -26.52482 -24.88188 -23.22048 -22.25185 -21.76672 -20.16693 -19.68188 -19.18776 -17.14257 -16.53014 -15.86158 -15.44023 -14.90310 -14.67647 -14.56983 -13.98005 -13.84769 -13.66113 -13.51401 -13.04951 -12.94706 -12.67282 -12.49651 -12.36829 -12.03377 -11.94834 -11.82486 -11.45540 -11.24737 -11.12786 -10.86249 -10.77683 -10.73332 -10.61454 -10.56762 -10.43079 -10.25819 -10.02099 -9.82134 -9.63506 -9.33612 -8.65377 -8.45340 -6.68307 -5.79747 -3.21971 2.86396 3.35986 3.43977 3.44776 3.46860 4.49280 4.56371 4.57733 4.68724 4.91769 5.05523 5.24828 5.33606 5.36274 5.40353 5.43372 5.46896 5.51814 5.55237 5.61045 5.61520 5.70954 5.72736 5.86165 5.89816 5.90987 6.01331 6.08398 6.12901 6.28545 6.32348 6.35092 6.46111 6.54295 6.57765 6.62295 6.80779 6.96432 7.00290 7.31998 7.60443 7.77548 7.81781 8.44384 8.49172 9.20663 9.83918 10.41117 11.29184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.002990 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.421435 B = 9363.165510 C = 9479.709504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.069 4.069 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.141 4.141 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.727 5.727 11 C 0.151 3.849 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.394 0.606 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 14.784 15.871 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.088 4.088 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.181 4.181 8 C 0.295 3.705 9 O -0.418 6.418 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.518 15.068 15.213 21.560 hybrid contribution -0.760 -1.088 0.082 1.330 sum -3.278 13.980 15.295 20.979 Atomic orbital electron populations 1.21934 0.95440 1.01817 1.01711 1.21174 0.95561 0.96350 0.98081 1.21880 1.01340 0.95824 1.01510 1.20908 0.96449 0.93366 0.98064 0.90427 1.22005 0.94800 1.01783 1.02615 1.21854 1.02854 0.97206 0.96215 1.20663 0.79294 0.81931 0.88656 1.90661 1.39924 1.64042 1.47144 1.46399 1.57522 1.12620 1.21156 1.21010 0.98695 0.92872 0.82714 1.22361 0.98540 0.99494 0.97443 1.20873 0.98014 0.85725 0.93335 1.44098 1.52732 0.99680 1.35075 1.19234 0.99589 0.93566 1.25680 0.91615 1.25059 0.95125 0.99554 1.00000 1.70037 1.09156 1.22869 1.52717 0.86228 0.79852 0.82628 0.78101 1.20266 1.21716 1.21573 1.20733 0.91439 0.99833 0.83200 1.22525 1.01282 0.93369 1.01448 0.92595 0.92881 0.92414 0.91324 0.93001 0.92287 0.92679 0.90517 0.92795 0.93579 0.89300 0.88943 0.77241 0.90160 0.92437 0.92804 0.96226 0.92609 0.93657 0.96167 0.89076 0.92832 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.85 37.16 0.33 -0.77 16 2 C -0.09 -0.73 2.51 -90.62 -0.23 -0.96 16 3 C -0.15 -1.11 8.84 37.16 0.33 -0.78 16 4 C -0.07 -0.69 1.62 -90.63 -0.15 -0.84 16 5 H 0.08 0.92 7.95 -51.93 -0.41 0.50 16 6 C -0.16 -1.68 8.58 37.15 0.32 -1.36 16 7 C -0.14 -1.39 4.96 -27.89 -0.14 -1.52 16 8 C 0.51 7.11 7.51 -10.99 -0.08 7.03 16 9 O -0.54 -9.61 13.63 5.55 0.08 -9.54 16 10 N -0.73 -10.05 5.08 -53.77 -0.27 -10.32 16 11 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 12 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 13 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 14 N -0.59 -14.93 2.99 -172.31 -0.52 -15.44 16 15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.16 11.19 55.49 0.62 -25.53 16 19 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 24 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 33 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.76 6.17 -51.93 -0.32 0.44 16 37 H 0.39 4.35 8.60 -40.82 -0.35 4.00 16 38 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -30.67 358.08 -8.63 -39.30 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.56 Total: 1.67 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.35 Total: -2.08 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.17 Total: -51.30 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.67 -8.63 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226535775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.629 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds