Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 4 2 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 4 2 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 4 11 11 H 1.09000 * 109.47449 * 35.00907 * 10 9 7 12 12 C 1.52999 * 109.47357 * 275.00168 * 10 9 7 13 13 C 1.52997 * 109.47350 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47202 * 59.99837 * 13 12 10 15 15 C 1.52999 * 109.47101 * 300.00315 * 14 13 12 16 16 C 1.52997 * 109.47350 * 59.99775 * 15 14 13 17 17 H 1.09006 * 109.46952 * 60.00056 * 16 15 14 18 18 N 1.46499 * 109.47269 * 179.97438 * 16 15 14 19 19 C 1.36940 * 119.99906 * 274.99946 * 18 16 15 20 20 H 1.07995 * 119.99862 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99873 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00135 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00195 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46869 * 89.99774 * 23 21 19 25 25 H 1.48495 * 109.47283 * 210.00057 * 23 21 19 26 26 H 1.48500 * 109.46940 * 330.00535 * 23 21 19 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47380 * 300.00763 * 6 4 2 35 35 H 1.09001 * 109.46997 * 60.00426 * 6 4 2 36 36 H 1.09000 * 109.47054 * 180.02562 * 6 4 2 37 37 H 0.96995 * 120.00011 * 0.02562 * 9 7 4 38 38 H 1.09006 * 109.47048 * 300.00150 * 12 10 9 39 39 H 1.09000 * 109.46920 * 60.00048 * 12 10 9 40 40 H 1.09000 * 109.47236 * 300.00604 * 13 12 10 41 41 H 1.08993 * 109.47578 * 179.97438 * 13 12 10 42 42 H 1.09004 * 109.47300 * 180.02562 * 14 13 12 43 43 H 1.09006 * 109.47080 * 60.00185 * 14 13 12 44 44 H 1.08991 * 109.47264 * 299.99427 * 15 14 13 45 45 H 1.09007 * 109.47219 * 179.97438 * 15 14 13 46 46 H 0.96999 * 120.00107 * 95.00091 * 18 16 15 47 47 H 0.96996 * 119.99974 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7207 -1.2495 7 6 1.5377 -2.1421 -1.2492 8 8 0.8400 -2.5386 -0.3398 9 7 1.8629 -2.9718 -2.2603 10 6 1.3741 -4.3528 -2.2605 11 1 0.3748 -4.3847 -1.8263 12 6 2.3179 -5.2281 -1.4335 13 6 1.8077 -6.6705 -1.4342 14 6 1.7563 -7.1925 -2.8715 15 6 0.8125 -6.3173 -3.6986 16 6 1.3227 -4.8749 -3.6978 17 1 2.3220 -4.8427 -4.1320 18 7 0.4194 -4.0369 -4.4903 19 6 0.5775 -3.9534 -5.8480 20 1 1.3684 -4.5049 -6.3344 21 6 -0.2788 -3.1598 -6.5989 22 7 -1.2424 -2.4873 -6.0059 23 14 -0.0628 -3.0452 -8.4508 24 1 -0.8681 -4.1048 -9.1095 25 1 -0.5188 -1.7125 -8.9208 26 1 1.3705 -3.2275 -8.7941 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 3.9330 0.3071 -1.2496 35 1 3.9337 -1.2343 -0.3595 36 1 3.9333 -1.2342 -2.1397 37 1 2.4206 -2.6546 -2.9878 38 1 3.3171 -5.1963 -1.8679 39 1 2.3548 -4.8559 -0.4096 40 1 0.8084 -6.7027 -1.0002 41 1 2.4803 -7.2941 -0.8454 42 1 1.3924 -8.2201 -2.8721 43 1 2.7557 -7.1604 -3.3057 44 1 -0.1867 -6.3495 -3.2645 45 1 0.7763 -6.6889 -4.7227 46 1 -0.2908 -3.5413 -4.0533 47 1 -1.8405 -1.9325 -6.5306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228903063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -63.418366 kcal Electronic energy + Delta-G solvation = -23809.590981 eV Core-core repulsion = 20605.006839 eV Total energy + Delta-G solvation = -3204.584142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98843 -38.16543 -35.81296 -34.03799 -33.74201 -31.18786 -30.83874 -29.02758 -27.63617 -27.04174 -24.29543 -23.70541 -22.24769 -21.08195 -20.40922 -19.78695 -19.04178 -17.26781 -16.72409 -15.92965 -15.14866 -14.78285 -14.48968 -14.32613 -13.99414 -13.76410 -13.67278 -13.41387 -12.96311 -12.84473 -12.71635 -12.17450 -12.12475 -12.05005 -11.98532 -11.85006 -11.41202 -11.08138 -10.95141 -10.90743 -10.74929 -10.70211 -10.58668 -10.54796 -10.41915 -10.29483 -10.17113 -9.73158 -9.61466 -9.15241 -8.90142 -8.45851 -6.98850 -5.78791 -3.08345 3.08613 3.40395 3.45787 3.47537 3.63267 4.54772 4.76577 4.92214 4.98732 5.08632 5.17106 5.28412 5.33542 5.46595 5.52049 5.52851 5.53353 5.65804 5.73369 5.78078 5.83985 5.88829 5.90925 5.94302 5.97232 5.98206 5.99889 6.06681 6.13036 6.19014 6.29765 6.34795 6.46863 6.50668 6.52450 6.53473 6.59870 6.73569 6.88243 6.98186 7.14079 7.66582 8.02885 8.38466 8.71521 9.50188 10.07108 10.42414 11.43111 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.006134 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.882827 B = 4563.540530 C = 6275.166225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.110 4.110 5 H 0.098 0.902 6 C -0.144 4.144 7 C 0.520 3.480 8 O -0.548 6.548 9 N -0.707 5.707 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 0.665 10.931 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 C -0.207 4.207 4 C -0.131 4.131 5 H 0.116 0.884 6 C -0.201 4.201 7 C 0.307 3.693 8 O -0.426 6.426 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.176 0.408 11.373 14.618 hybrid contribution -0.007 0.390 -1.434 1.486 sum 9.168 0.798 9.939 13.545 Atomic orbital electron populations 1.22074 0.94658 1.04322 1.00626 1.20846 0.96617 0.94928 0.96671 1.21932 1.00811 0.96147 1.01762 1.21389 0.97022 0.93606 1.01086 0.88406 1.21813 0.93446 1.02606 1.02248 1.20497 0.79778 0.87272 0.81801 1.90581 1.38291 1.77314 1.36461 1.45938 1.53022 1.12068 1.24564 1.21259 0.97959 0.80163 0.97071 0.89952 1.21860 0.99100 0.95071 1.00151 1.21470 1.01156 0.95455 0.97099 1.21580 1.00122 0.98791 0.95229 1.22219 0.98638 0.96782 0.99765 1.20461 0.94633 0.90040 0.88630 0.93292 1.42407 1.35900 1.53715 1.04148 1.19200 1.11744 1.22805 0.83375 0.91249 1.24731 0.98171 1.00041 0.97781 1.69673 1.20022 1.33580 1.34423 0.86240 0.77398 0.76950 0.85860 1.21782 1.21862 1.20826 0.93338 0.89651 0.93531 0.90989 0.92622 0.92777 0.92591 0.91449 0.92406 0.92122 0.76384 0.92175 0.92015 0.92012 0.92480 0.92737 0.92432 0.92495 0.91678 0.78146 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.87 37.16 0.33 -1.96 16 2 C -0.07 -0.92 2.15 -90.62 -0.19 -1.11 16 3 C -0.15 -1.54 8.84 37.16 0.33 -1.21 16 4 C -0.11 -1.46 2.32 -91.77 -0.21 -1.68 16 5 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 6 C -0.14 -1.53 8.74 37.16 0.32 -1.20 16 7 C 0.52 8.57 6.83 -10.98 -0.07 8.49 16 8 O -0.55 -10.50 13.32 5.56 0.07 -10.43 16 9 N -0.71 -11.51 4.80 -53.81 -0.26 -11.76 16 10 C 0.14 2.40 1.98 -67.93 -0.13 2.26 16 11 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 12 C -0.12 -1.76 5.49 -26.73 -0.15 -1.90 16 13 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 14 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 15 C -0.13 -2.32 5.50 -26.73 -0.15 -2.46 16 16 C 0.17 3.26 2.29 -67.93 -0.16 3.10 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.18 4.95 -53.42 -0.26 -17.44 16 19 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 23 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.47 5.51 -51.93 -0.29 1.18 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 34 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.62 7.57 -51.93 -0.39 0.23 16 37 H 0.40 6.27 8.02 -40.82 -0.33 5.94 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -29.50 362.93 -8.62 -38.11 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -8.69 Total: 14.00 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.65 Total: -8.03 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.20 Total: -55.99 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.50 -8.62 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228903063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.304 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds