Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47101 * 120.00315 * 2 1 3 5 5 H 1.08995 * 109.46779 * 299.99479 * 4 2 1 6 6 C 1.53002 * 109.46858 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.47049 * 60.00010 * 4 2 1 8 8 O 1.21280 * 119.99748 * 359.97438 * 7 4 2 9 9 N 1.34769 * 119.99510 * 180.02562 * 7 4 2 10 10 C 1.46505 * 119.99798 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.47068 * 34.99973 * 10 9 7 12 12 C 1.52997 * 109.47212 * 274.99913 * 10 9 7 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47106 * 60.00162 * 13 12 10 15 15 C 1.53002 * 109.47128 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.46978 * 59.99726 * 15 14 13 17 17 H 1.09002 * 109.47497 * 60.00450 * 16 15 14 18 18 N 1.46507 * 109.47235 * 180.02562 * 16 15 14 19 19 C 1.36936 * 119.99663 * 275.00138 * 18 16 15 20 20 H 1.07998 * 120.00133 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99967 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00257 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46920 * 359.97438 * 23 21 19 25 25 H 1.48509 * 109.47210 * 119.99507 * 23 21 19 26 26 H 1.48492 * 109.47349 * 239.99702 * 23 21 19 27 27 H 1.09004 * 109.46683 * 300.00166 * 1 2 3 28 28 H 1.09001 * 109.47112 * 59.99239 * 1 2 3 29 29 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46398 * 240.00254 * 2 1 3 31 31 H 1.09007 * 109.47408 * 300.00101 * 3 2 1 32 32 H 1.08995 * 109.47422 * 60.00065 * 3 2 1 33 33 H 1.09000 * 109.47286 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47175 * 60.00061 * 6 4 2 35 35 H 1.09007 * 109.46779 * 180.02562 * 6 4 2 36 36 H 1.09004 * 109.47051 * 299.99595 * 6 4 2 37 37 H 0.97005 * 120.00963 * 359.97438 * 9 7 4 38 38 H 1.09002 * 109.47153 * 300.00008 * 12 10 9 39 39 H 1.08998 * 109.47533 * 59.99637 * 12 10 9 40 40 H 1.09002 * 109.47103 * 300.00247 * 13 12 10 41 41 H 1.08996 * 109.47747 * 179.97438 * 13 12 10 42 42 H 1.08996 * 109.47407 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47596 * 60.00070 * 14 13 12 44 44 H 1.09002 * 109.47097 * 299.99925 * 15 14 13 45 45 H 1.08998 * 109.47844 * 180.02562 * 15 14 13 46 46 H 0.96997 * 120.00022 * 95.00053 * 18 16 15 47 47 H 0.96998 * 119.99581 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5700 -0.7218 1.2488 7 6 1.5377 -2.1422 1.2491 8 8 0.8400 -2.5386 0.3397 9 7 1.8629 -2.9718 2.2601 10 6 1.3741 -4.3529 2.2604 11 1 1.3374 -4.7256 1.2367 12 6 -0.0286 -4.3974 2.8698 13 6 -0.5393 -5.8396 2.8695 14 6 0.4042 -6.7149 3.6969 15 6 1.8069 -6.6705 3.0875 16 6 2.3176 -5.2283 3.0878 17 1 2.3543 -4.8560 4.1116 18 7 3.6605 -5.1856 2.5037 19 6 4.7559 -5.4349 3.2867 20 1 4.6298 -5.6626 4.3348 21 6 6.0283 -5.3940 2.7334 22 7 6.1819 -5.1160 1.4561 23 14 7.5225 -5.7348 3.8014 24 1 7.0832 -6.0197 5.1910 25 1 8.2580 -6.9077 3.2639 26 1 8.4144 -4.5475 3.7983 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 3.9337 0.3057 1.2486 35 1 3.9334 -1.2362 2.1386 36 1 3.9330 -1.2360 0.3588 37 1 2.4205 -2.6547 2.9877 38 1 0.0081 -4.0248 3.8935 39 1 -0.7009 -3.7742 2.2803 40 1 -0.5760 -6.2118 1.8457 41 1 -1.5384 -5.8714 3.3041 42 1 0.0406 -7.7425 3.6964 43 1 0.4409 -6.3428 4.7208 44 1 1.7701 -7.0428 2.0637 45 1 2.4790 -7.2944 3.6766 46 1 3.7736 -4.9808 1.5623 47 1 7.0710 -5.0878 1.0695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228903073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -63.397394 kcal Electronic energy + Delta-G solvation = -23855.035288 eV Core-core repulsion = 20650.452055 eV Total energy + Delta-G solvation = -3204.583232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98284 -38.16242 -35.80499 -34.04178 -33.73321 -31.17283 -30.80863 -28.99205 -27.63074 -27.07583 -24.21100 -23.71225 -22.24030 -21.07680 -20.39589 -19.82912 -19.00574 -17.28655 -16.70067 -15.93241 -15.16660 -14.71935 -14.45406 -14.31160 -13.94522 -13.84921 -13.64955 -13.39996 -12.94390 -12.78861 -12.66488 -12.20440 -12.13505 -12.04390 -11.87947 -11.83602 -11.33164 -11.08276 -10.95563 -10.88234 -10.79828 -10.74253 -10.59129 -10.49175 -10.39249 -10.30957 -10.14101 -9.73006 -9.62820 -9.13656 -8.89487 -8.47252 -6.98697 -5.78978 -3.08361 3.08250 3.39779 3.45945 3.48113 3.64153 4.54627 4.79252 4.94985 5.02174 5.08612 5.17209 5.30033 5.38610 5.50287 5.53441 5.54647 5.57247 5.68930 5.74036 5.74333 5.84840 5.90737 5.95026 5.96190 5.98670 5.99853 6.04620 6.10465 6.13086 6.24357 6.34462 6.44963 6.46780 6.50268 6.52381 6.53936 6.59756 6.65875 6.88173 6.97196 7.13762 7.67123 8.02906 8.38230 8.71515 9.50181 10.07027 10.42502 11.42933 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.006209 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.438110 B = 4508.790752 C = 6443.674015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C -0.149 4.149 4 C -0.105 4.105 5 H 0.089 0.911 6 C -0.145 4.145 7 C 0.519 3.481 8 O -0.548 6.548 9 N -0.707 5.707 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 8.113 2.078 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.126 4.126 5 H 0.107 0.893 6 C -0.203 4.203 7 C 0.306 3.694 8 O -0.427 6.427 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.067 0.933 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.934 7.802 1.567 14.344 hybrid contribution 1.312 -0.062 0.621 1.453 sum -10.623 7.740 2.188 13.324 Atomic orbital electron populations 1.22067 0.95043 1.04022 1.00323 1.20874 0.96195 0.95082 0.97221 1.21922 1.01266 0.95974 1.01430 1.21364 0.97793 0.93178 1.00308 0.89268 1.21823 0.92453 1.02282 1.03732 1.20534 0.79735 0.87597 0.81568 1.90579 1.38739 1.77305 1.36044 1.45938 1.52549 1.11985 1.25124 1.21260 0.92611 0.81458 1.01140 0.89952 1.21862 0.96626 0.96946 1.00781 1.21469 0.98200 0.94947 1.00558 1.21578 0.96122 0.98872 0.99155 1.22218 0.94512 0.99849 1.00819 1.20460 0.85636 0.92131 0.95528 0.93293 1.42412 0.99256 1.84155 1.10321 1.19242 0.85188 1.39986 0.92609 0.91220 1.24719 0.97381 1.02634 0.95947 1.69683 1.21676 1.55455 1.10820 0.86184 0.83497 0.77441 0.79433 1.20631 1.21948 1.21964 0.93857 0.93472 0.89738 0.90614 0.92806 0.92931 0.92281 0.91797 0.91489 0.91757 0.76386 0.92171 0.92022 0.92008 0.92479 0.92740 0.92432 0.92502 0.91678 0.78133 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.87 37.16 0.33 -1.67 16 2 C -0.07 -0.96 2.15 -90.62 -0.19 -1.15 16 3 C -0.15 -1.54 8.84 37.16 0.33 -1.21 16 4 C -0.11 -1.40 2.32 -91.77 -0.21 -1.62 16 5 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.15 -2.00 8.74 37.16 0.32 -1.68 16 7 C 0.52 8.55 6.83 -10.99 -0.07 8.47 16 8 O -0.55 -10.50 13.32 5.56 0.07 -10.42 16 9 N -0.71 -11.48 4.80 -53.80 -0.26 -11.73 16 10 C 0.14 2.39 1.97 -67.93 -0.13 2.25 16 11 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 12 C -0.12 -1.76 5.49 -26.74 -0.15 -1.91 16 13 C -0.11 -1.50 5.92 -26.73 -0.16 -1.65 16 14 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 15 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 16 C 0.17 3.24 2.29 -67.93 -0.16 3.09 16 17 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 18 N -0.72 -17.04 4.95 -53.42 -0.26 -17.30 16 19 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 23 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.29 5.51 -51.93 -0.29 1.00 16 30 H 0.08 1.11 8.10 -51.93 -0.42 0.68 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 34 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 35 H 0.07 0.99 7.56 -51.93 -0.39 0.59 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 6.24 8.02 -40.82 -0.33 5.92 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.19 362.92 -8.62 -37.81 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -8.69 Total: 14.11 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.65 Total: -8.14 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.20 Total: -55.58 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.19 -8.62 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228903073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.591 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds