Wall clock time and date at job start Tue Mar 31 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 C 1.52999 * 109.46904 * 120.00028 * 2 1 3 5 5 H 1.08999 * 109.47068 * 299.99392 * 4 2 1 6 6 C 1.53002 * 109.46546 * 180.02562 * 4 2 1 7 7 C 1.52998 * 109.47292 * 60.00124 * 4 2 1 8 8 C 1.50701 * 109.46993 * 184.99542 * 7 4 2 9 9 O 1.21272 * 120.00037 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99866 * 179.97438 * 8 7 4 11 11 C 1.46499 * 119.99995 * 355.02243 * 10 8 7 12 12 C 1.46496 * 120.00020 * 175.02225 * 10 8 7 13 13 C 1.52994 * 109.47207 * 94.72660 * 12 10 8 14 14 H 1.08998 * 112.73992 * 316.18216 * 13 12 10 15 15 C 1.53495 * 113.47185 * 86.93059 * 13 12 10 16 16 C 1.53609 * 83.30848 * 140.82935 * 15 13 12 17 17 N 1.47066 * 113.46692 * 185.44285 * 13 12 10 18 18 C 1.36939 * 136.06261 * 38.06051 * 17 13 12 19 19 H 1.08008 * 119.99382 * 354.79016 * 18 17 13 20 20 C 1.38811 * 120.00369 * 174.78991 * 18 17 13 21 21 N 1.31623 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46942 * 90.00410 * 22 20 18 24 24 H 1.48503 * 109.47177 * 209.99973 * 22 20 18 25 25 H 1.48499 * 109.46990 * 330.00090 * 22 20 18 26 26 H 1.09002 * 109.47360 * 59.99786 * 1 2 3 27 27 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47057 * 300.00401 * 1 2 3 29 29 H 1.09002 * 109.46546 * 240.00089 * 2 1 3 30 30 H 1.08998 * 109.47227 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47216 * 300.00302 * 3 2 1 32 32 H 1.08994 * 109.47243 * 59.99952 * 3 2 1 33 33 H 1.09002 * 109.47002 * 180.02562 * 6 4 2 34 34 H 1.08996 * 109.47445 * 60.00383 * 6 4 2 35 35 H 1.08999 * 109.46916 * 299.99456 * 6 4 2 36 36 H 1.08999 * 109.46803 * 304.99651 * 7 4 2 37 37 H 1.08997 * 109.46923 * 64.99326 * 7 4 2 38 38 H 1.08998 * 109.47604 * 89.99679 * 11 10 8 39 39 H 1.09000 * 109.47384 * 209.99846 * 11 10 8 40 40 H 1.09002 * 109.47531 * 329.99857 * 11 10 8 41 41 H 1.09004 * 109.47042 * 214.72606 * 12 10 8 42 42 H 1.09002 * 109.46913 * 334.72323 * 12 10 8 43 43 H 1.09002 * 114.20692 * 254.43948 * 15 13 12 44 44 H 1.09002 * 114.20670 * 27.25368 * 15 13 12 45 45 H 1.09004 * 113.50488 * 219.18247 * 16 15 13 46 46 H 1.09003 * 113.46638 * 88.76665 * 16 15 13 47 47 H 0.96995 * 119.99597 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5300 -2.1637 1.2492 8 6 1.9288 -2.8375 2.5369 9 8 2.5584 -2.2242 3.3725 10 7 1.5848 -4.1213 2.7603 11 6 0.7314 -4.8284 1.8022 12 6 2.0643 -4.8098 3.9613 13 6 1.0068 -4.7106 5.0625 14 1 0.5755 -3.7129 5.1438 15 6 -0.0440 -5.8279 5.0034 16 6 0.0867 -5.7857 6.5334 17 7 1.4495 -5.2639 6.3511 18 6 2.6171 -5.2848 7.0664 19 1 3.5200 -4.8750 6.6382 20 6 2.6402 -5.8328 8.3415 21 7 1.5400 -6.3327 8.8631 22 14 4.2332 -5.8619 9.3168 23 1 4.3452 -4.6173 10.1191 24 1 4.2367 -7.0376 10.2241 25 1 5.3839 -5.9541 8.3827 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9334 -1.2349 2.1392 34 1 3.9330 0.3071 1.2498 35 1 3.9337 -1.2343 0.3595 36 1 0.4437 -2.1650 1.1597 37 1 1.9646 -2.7027 0.4074 38 1 1.3539 -5.3164 1.0522 39 1 0.1397 -5.5784 2.3271 40 1 0.0655 -4.1165 1.3143 41 1 2.2499 -5.8585 3.7292 42 1 2.9889 -4.3440 4.3023 43 1 -1.0161 -5.5078 4.6283 44 1 0.3121 -6.7528 4.5497 45 1 0.0576 -6.7706 6.9995 46 1 -0.5904 -5.0751 7.0074 47 1 1.5561 -6.7152 9.7543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231114159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:46 Heat of formation + Delta-G solvation = 3.973802 kcal Electronic energy + Delta-G solvation = -23184.174786 eV Core-core repulsion = 19982.512988 eV Total energy + Delta-G solvation = -3201.661798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00269 -38.20713 -37.16097 -35.10428 -32.15805 -31.66227 -29.32358 -28.10826 -27.86211 -26.69804 -25.66653 -23.42561 -23.19823 -21.87817 -19.75150 -19.22646 -18.77000 -16.93764 -16.60034 -16.02276 -15.67971 -14.87035 -14.71566 -14.49199 -14.19147 -13.90356 -13.62925 -13.43259 -13.00834 -12.76820 -12.64901 -12.47768 -12.39662 -11.99503 -11.89176 -11.78255 -11.70873 -11.43245 -11.20239 -11.08449 -10.86053 -10.72767 -10.71290 -10.54368 -10.49108 -10.38836 -9.80703 -9.78013 -9.53069 -9.23028 -8.74109 -8.21144 -6.81230 -5.71327 -3.02710 2.90007 3.25894 3.44332 3.49479 3.50950 4.50006 4.54170 4.62841 4.71269 4.92071 4.96951 5.18258 5.26377 5.28507 5.41019 5.41360 5.45330 5.48558 5.52182 5.57143 5.60010 5.65399 5.71953 5.76750 5.78826 5.86375 5.91475 5.95522 6.03587 6.06393 6.16303 6.23341 6.34408 6.38679 6.46714 6.52129 6.62757 6.73483 6.94010 7.28812 7.45761 7.62063 7.67995 8.04281 8.48466 9.10843 9.76909 10.71220 11.46990 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.003749 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.875831 B = 7466.687950 C = 8174.081517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.071 4.071 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.137 4.137 8 C 0.506 3.494 9 O -0.532 6.532 10 N -0.613 5.613 11 C 0.079 3.921 12 C 0.115 3.885 13 C 0.134 3.866 14 H 0.042 0.958 15 C -0.169 4.169 16 C 0.158 3.842 17 N -0.601 5.601 18 C -0.214 4.214 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.024 0.976 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 7.790 -21.234 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.090 4.090 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.408 6.408 10 N -0.347 5.347 11 C -0.065 4.065 12 C -0.008 4.008 13 C 0.026 3.974 14 H 0.060 0.940 15 C -0.208 4.208 16 C 0.032 3.968 17 N -0.326 5.326 18 C -0.341 4.341 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.102 8.019 -20.477 22.208 hybrid contribution 0.640 -0.015 0.649 0.911 sum -2.462 8.004 -19.828 21.524 Atomic orbital electron populations 1.21935 0.95446 1.01773 1.01724 1.21165 0.95550 0.96331 0.98028 1.21880 1.01339 0.95840 1.01509 1.20939 0.96472 0.93478 0.98111 0.90369 1.21999 0.94818 1.01776 1.02557 1.21854 1.02682 0.97015 0.96112 1.20684 0.79710 0.81520 0.88663 1.90693 1.40142 1.63209 1.46772 1.47928 1.50802 1.12222 1.23772 1.21778 0.94274 0.97710 0.92712 1.21835 0.99065 0.96296 0.83601 1.22397 0.92218 0.95394 0.87404 0.94047 1.23780 0.97596 0.98833 1.00563 1.21947 0.85741 0.98741 0.90323 1.45696 1.06797 1.61798 1.18349 1.18942 0.85473 1.33751 0.95951 0.90160 1.24798 0.97305 1.01610 0.96767 1.69846 1.25904 1.44656 1.16451 0.86137 0.82622 0.77141 0.80014 1.21606 1.21699 1.20565 0.92894 0.92450 0.92562 0.91363 0.92299 0.93023 0.92648 0.90530 0.92786 0.93648 0.88948 0.89352 0.93005 0.90534 0.91533 0.90755 0.89924 0.92837 0.90598 0.91621 0.95825 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.85 37.16 0.33 -0.83 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 4 C -0.07 -0.77 1.62 -90.62 -0.15 -0.92 16 5 H 0.08 1.02 7.95 -51.93 -0.41 0.60 16 6 C -0.15 -1.80 8.58 37.16 0.32 -1.49 16 7 C -0.14 -1.45 3.63 -27.88 -0.10 -1.55 16 8 C 0.51 7.77 7.38 -10.98 -0.08 7.69 16 9 O -0.53 -10.51 13.52 5.56 0.08 -10.43 16 10 N -0.61 -9.05 2.87 -181.58 -0.52 -9.57 16 11 C 0.08 0.79 10.23 59.85 0.61 1.41 16 12 C 0.12 2.15 5.37 -4.05 -0.02 2.13 16 13 C 0.13 2.85 4.31 -72.40 -0.31 2.54 16 14 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.17 -3.17 7.13 -26.16 -0.19 -3.36 16 16 C 0.16 3.83 7.28 -8.44 -0.06 3.77 16 17 N -0.60 -15.89 3.65 -176.79 -0.64 -16.53 16 18 C -0.21 -6.20 10.55 -15.06 -0.16 -6.36 16 19 H 0.08 2.28 7.83 -52.48 -0.41 1.87 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.11 11.64 55.49 0.65 -27.47 16 22 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 34 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.82 5.28 -51.93 -0.27 0.55 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.77 7.15 -51.93 -0.37 0.40 16 40 H 0.07 0.52 6.48 -51.93 -0.34 0.18 16 41 H 0.07 1.31 7.84 -51.93 -0.41 0.91 16 42 H 0.08 1.80 7.36 -51.93 -0.38 1.41 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 45 H 0.07 1.73 7.36 -51.93 -0.38 1.35 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -33.54 362.52 -8.29 -41.83 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.48 Total: -1.99 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.20 Total: 0.82 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.52 Total: -53.57 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.54 -8.29 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231114159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.801 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds