Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 C 1.52999 * 109.46904 * 120.00028 * 2 1 3 5 5 H 1.08999 * 109.47068 * 299.99392 * 4 2 1 6 6 C 1.53002 * 109.46546 * 180.02562 * 4 2 1 7 7 C 1.52998 * 109.47292 * 60.00124 * 4 2 1 8 8 C 1.50701 * 109.46993 * 184.99542 * 7 4 2 9 9 O 1.21272 * 120.00037 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99866 * 179.97438 * 8 7 4 11 11 C 1.46499 * 119.99995 * 355.02243 * 10 8 7 12 12 C 1.46496 * 120.00020 * 175.02225 * 10 8 7 13 13 C 1.52994 * 109.47207 * 94.72660 * 12 10 8 14 14 H 1.08998 * 112.73992 * 316.18216 * 13 12 10 15 15 C 1.53495 * 113.47185 * 86.93059 * 13 12 10 16 16 C 1.53609 * 83.30848 * 140.82935 * 15 13 12 17 17 N 1.47066 * 113.46692 * 185.44285 * 13 12 10 18 18 C 1.36939 * 136.06261 * 38.06051 * 17 13 12 19 19 H 1.08008 * 119.99382 * 354.79016 * 18 17 13 20 20 C 1.38811 * 120.00369 * 174.78991 * 18 17 13 21 21 N 1.31623 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46942 * 90.00410 * 22 20 18 24 24 H 1.48503 * 109.47177 * 209.99973 * 22 20 18 25 25 H 1.48499 * 109.46990 * 330.00090 * 22 20 18 26 26 H 1.09002 * 109.47360 * 59.99786 * 1 2 3 27 27 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47057 * 300.00401 * 1 2 3 29 29 H 1.09002 * 109.46546 * 240.00089 * 2 1 3 30 30 H 1.08998 * 109.47227 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47216 * 300.00302 * 3 2 1 32 32 H 1.08994 * 109.47243 * 59.99952 * 3 2 1 33 33 H 1.09002 * 109.47002 * 180.02562 * 6 4 2 34 34 H 1.08996 * 109.47445 * 60.00383 * 6 4 2 35 35 H 1.08999 * 109.46916 * 299.99456 * 6 4 2 36 36 H 1.08999 * 109.46803 * 304.99651 * 7 4 2 37 37 H 1.08997 * 109.46923 * 64.99326 * 7 4 2 38 38 H 1.08998 * 109.47604 * 89.99679 * 11 10 8 39 39 H 1.09000 * 109.47384 * 209.99846 * 11 10 8 40 40 H 1.09002 * 109.47531 * 329.99857 * 11 10 8 41 41 H 1.09004 * 109.47042 * 214.72606 * 12 10 8 42 42 H 1.09002 * 109.46913 * 334.72323 * 12 10 8 43 43 H 1.09002 * 114.20692 * 254.43948 * 15 13 12 44 44 H 1.09002 * 114.20670 * 27.25368 * 15 13 12 45 45 H 1.09004 * 113.50488 * 219.18247 * 16 15 13 46 46 H 1.09003 * 113.46638 * 88.76665 * 16 15 13 47 47 H 0.96995 * 119.99597 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5300 -2.1637 1.2492 8 6 1.9288 -2.8375 2.5369 9 8 2.5584 -2.2242 3.3725 10 7 1.5848 -4.1213 2.7603 11 6 0.7314 -4.8284 1.8022 12 6 2.0643 -4.8098 3.9613 13 6 1.0068 -4.7106 5.0625 14 1 0.5755 -3.7129 5.1438 15 6 -0.0440 -5.8279 5.0034 16 6 0.0867 -5.7857 6.5334 17 7 1.4495 -5.2639 6.3511 18 6 2.6171 -5.2848 7.0664 19 1 3.5200 -4.8750 6.6382 20 6 2.6402 -5.8328 8.3415 21 7 1.5400 -6.3327 8.8631 22 14 4.2332 -5.8619 9.3168 23 1 4.3452 -4.6173 10.1191 24 1 4.2367 -7.0376 10.2241 25 1 5.3839 -5.9541 8.3827 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9334 -1.2349 2.1392 34 1 3.9330 0.3071 1.2498 35 1 3.9337 -1.2343 0.3595 36 1 0.4437 -2.1650 1.1597 37 1 1.9646 -2.7027 0.4074 38 1 1.3539 -5.3164 1.0522 39 1 0.1397 -5.5784 2.3271 40 1 0.0655 -4.1165 1.3143 41 1 2.2499 -5.8585 3.7292 42 1 2.9889 -4.3440 4.3023 43 1 -1.0161 -5.5078 4.6283 44 1 0.3121 -6.7528 4.5497 45 1 0.0576 -6.7706 6.9995 46 1 -0.5904 -5.0751 7.0074 47 1 1.5561 -6.7152 9.7543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231114159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -16.627058 kcal Electronic energy + Delta-G solvation = -23185.068107 eV Core-core repulsion = 19982.512988 eV Total energy + Delta-G solvation = -3202.555118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21541 -39.83933 -38.11227 -36.37704 -34.30050 -32.52865 -30.48180 -29.92659 -29.08041 -27.53778 -26.70200 -25.44263 -24.31979 -23.21420 -21.09582 -20.54030 -19.91416 -18.72639 -17.89777 -17.34036 -17.05162 -16.49147 -15.97787 -15.73768 -15.32673 -15.30185 -14.76566 -14.56552 -14.33668 -13.93331 -13.82598 -13.59103 -13.44895 -13.16115 -13.14308 -12.98145 -12.73963 -12.66594 -12.64307 -12.59594 -12.42552 -12.24889 -11.94034 -11.84724 -11.63242 -11.50084 -11.32646 -11.23998 -11.20437 -10.88919 -10.54475 -9.53515 -8.92587 -7.94517 -5.26945 1.40584 1.43584 1.51974 1.74154 2.09385 2.46565 3.26525 3.47298 3.61173 3.81743 3.84656 3.95947 4.12552 4.24299 4.27757 4.32528 4.43476 4.52220 4.59479 4.62320 4.71142 4.73468 4.78673 4.82011 4.86962 4.94007 4.94921 4.98805 5.03619 5.06372 5.09622 5.11772 5.15704 5.21648 5.27426 5.33011 5.46378 5.48200 5.53831 5.60918 5.63412 5.76044 5.92361 6.55224 6.89753 7.32348 7.57364 8.59231 9.23722 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.003749 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.875831 B = 7466.687950 C = 8174.081517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.150 4.150 4 C -0.070 4.070 5 H 0.047 0.953 6 C -0.151 4.151 7 C -0.124 4.124 8 C 0.496 3.504 9 O -0.588 6.588 10 N -0.612 5.612 11 C 0.069 3.931 12 C 0.131 3.869 13 C 0.134 3.866 14 H 0.021 0.979 15 C -0.126 4.126 16 C 0.148 3.852 17 N -0.632 5.632 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.287 1.287 25 H -0.269 1.269 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.038 0.962 46 H 0.008 0.992 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 7.421 -24.692 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.089 4.089 5 H 0.066 0.934 6 C -0.208 4.208 7 C -0.164 4.164 8 C 0.286 3.714 9 O -0.469 6.469 10 N -0.345 5.345 11 C -0.072 4.072 12 C 0.006 3.994 13 C 0.026 3.974 14 H 0.039 0.961 15 C -0.163 4.163 16 C 0.022 3.978 17 N -0.358 5.358 18 C -0.354 4.354 19 H 0.092 0.908 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.193 1.193 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.979 7.644 -24.003 25.503 hybrid contribution 0.883 0.160 1.699 1.921 sum -3.097 7.804 -22.304 23.832 Atomic orbital electron populations 1.21947 0.94572 1.02580 1.01799 1.21118 0.96203 0.96041 0.96947 1.21900 1.01203 0.95972 1.01694 1.20918 0.95703 0.93977 0.98343 0.93420 1.21942 0.95762 1.01721 1.01423 1.21894 1.04324 0.96211 0.93922 1.21652 0.78629 0.81411 0.89701 1.90682 1.42631 1.64577 1.48973 1.48017 1.51126 1.12279 1.23077 1.22147 0.94452 0.98420 0.92168 1.21368 0.96466 0.96880 0.84672 1.22481 0.93620 0.95117 0.86147 0.96112 1.23535 0.98650 0.98358 0.95795 1.22000 0.84788 0.96694 0.94275 1.46104 1.06844 1.62632 1.20225 1.19214 0.86650 1.32994 0.96514 0.90768 1.25619 1.00611 1.01844 0.97790 1.70017 1.27826 1.45776 1.16497 0.85118 0.79202 0.76836 0.78467 1.21709 1.21342 1.19333 0.91573 0.91259 0.93802 0.89616 0.92590 0.91523 0.93788 0.94384 0.92424 0.91828 0.86334 0.86358 0.90666 0.90110 0.88497 0.89439 0.94082 0.88741 0.88652 0.94350 0.97427 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.85 71.98 0.64 -1.19 16 2 C -0.08 -1.19 2.51 -10.79 -0.03 -1.22 16 3 C -0.15 -2.18 8.84 71.98 0.64 -1.54 16 4 C -0.07 -1.45 1.62 -10.79 -0.02 -1.46 16 5 H 0.05 1.27 7.95 -2.39 -0.02 1.25 16 6 C -0.15 -3.50 8.58 71.98 0.62 -2.88 16 7 C -0.12 -2.28 3.63 29.85 0.11 -2.17 16 8 C 0.50 14.86 7.38 87.66 0.65 15.51 16 9 O -0.59 -24.35 13.52 -3.00 -0.04 -24.39 16 10 N -0.61 -16.95 2.87 -846.78 -2.43 -19.38 16 11 C 0.07 1.09 10.23 127.77 1.31 2.39 16 12 C 0.13 4.86 5.37 86.38 0.46 5.32 16 13 C 0.13 5.70 4.31 41.79 0.18 5.88 16 14 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 15 C -0.13 -4.43 7.13 30.97 0.22 -4.21 16 16 C 0.15 7.29 7.28 83.22 0.61 7.90 16 17 N -0.63 -34.31 3.65 -713.24 -2.60 -36.91 16 18 C -0.23 -13.50 10.55 84.03 0.89 -12.62 16 19 H 0.07 4.40 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.95 -59.85 11.64 21.65 0.25 -59.60 16 22 Si 0.98 48.27 29.55 68.60 2.03 50.30 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.66 6.32 -2.39 -0.02 0.65 16 28 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.83 6.43 -2.39 -0.02 0.82 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 1.18 5.95 -2.39 -0.01 1.17 16 34 H 0.06 1.24 6.43 -2.39 -0.02 1.22 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.12 1.59 5.28 -2.39 -0.01 1.58 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.24 7.15 -2.39 -0.02 1.22 16 40 H 0.10 0.96 6.48 -2.39 -0.02 0.95 16 41 H 0.09 2.98 7.84 -2.39 -0.02 2.96 16 42 H 0.04 1.86 7.36 -2.39 -0.02 1.84 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.10 3.05 7.93 -2.39 -0.02 3.03 16 45 H 0.04 2.07 7.36 -2.38 -0.02 2.05 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -78.71 362.52 4.85 -73.86 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.92 Total: 9.91 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.73 Total: 6.22 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -4.78 Total: -115.89 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -78.71 4.85 -73.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231114159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.233 kcal (2) G-P(sol) polarization free energy of solvation -78.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds