Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47130 * 119.99693 * 2 1 3 5 5 H 1.09000 * 109.47691 * 300.00218 * 4 2 1 6 6 C 1.53010 * 109.46876 * 60.00099 * 4 2 1 7 7 C 1.52996 * 109.47086 * 179.97438 * 4 2 1 8 8 C 1.50704 * 109.47209 * 174.57148 * 7 4 2 9 9 O 1.21274 * 119.99864 * 359.76481 * 8 7 4 10 10 N 1.34773 * 119.99920 * 179.76207 * 8 7 4 11 11 C 1.46497 * 120.00288 * 4.34093 * 10 8 7 12 12 C 1.46502 * 119.99707 * 184.34174 * 10 8 7 13 13 C 1.53000 * 109.47341 * 85.08285 * 12 10 8 14 14 H 1.08999 * 112.73543 * 315.01838 * 13 12 10 15 15 C 1.53493 * 113.47124 * 85.83687 * 13 12 10 16 16 C 1.53243 * 83.42978 * 140.67894 * 15 13 12 17 17 N 1.47062 * 88.08218 * 334.10812 * 16 15 13 18 18 C 1.36938 * 136.05692 * 207.20498 * 17 16 15 19 19 H 1.07997 * 120.00665 * 173.90966 * 18 17 16 20 20 C 1.38815 * 119.99818 * 354.18923 * 18 17 16 21 21 N 1.31612 * 119.99985 * 4.72858 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 184.73102 * 20 18 17 23 23 H 1.48498 * 109.46958 * 94.99217 * 22 20 18 24 24 H 1.48504 * 109.46998 * 214.99231 * 22 20 18 25 25 H 1.48501 * 109.46722 * 334.99025 * 22 20 18 26 26 H 1.09000 * 109.47012 * 299.99672 * 1 2 3 27 27 H 1.08999 * 109.46986 * 59.99936 * 1 2 3 28 28 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47047 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.47405 * 60.00011 * 3 2 1 31 31 H 1.09001 * 109.47236 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47302 * 299.99871 * 3 2 1 33 33 H 1.09001 * 109.46834 * 64.63966 * 6 4 2 34 34 H 1.08998 * 109.46794 * 184.64006 * 6 4 2 35 35 H 1.09001 * 109.47124 * 304.63902 * 6 4 2 36 36 H 1.09002 * 109.47371 * 54.57172 * 7 4 2 37 37 H 1.09006 * 109.47463 * 294.57219 * 7 4 2 38 38 H 1.09009 * 109.47187 * 270.00276 * 11 10 8 39 39 H 1.09000 * 109.47126 * 29.99658 * 11 10 8 40 40 H 1.08999 * 109.47406 * 149.99717 * 11 10 8 41 41 H 1.09000 * 109.47317 * 325.07884 * 12 10 8 42 42 H 1.09008 * 109.46588 * 205.07703 * 12 10 8 43 43 H 1.08997 * 114.21242 * 254.43656 * 15 13 12 44 44 H 1.08998 * 114.20347 * 27.06836 * 15 13 12 45 45 H 1.08996 * 113.38131 * 219.29287 * 16 15 13 46 46 H 1.08998 * 113.46385 * 88.93123 * 16 15 13 47 47 H 0.97006 * 120.00340 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 3.5700 -0.7217 1.2489 8 6 4.0724 -1.3125 2.5411 9 8 3.2844 -1.6914 3.3815 10 7 5.3975 -1.4197 2.7628 11 6 6.3492 -0.8761 1.7907 12 6 5.8861 -2.0799 3.9759 13 6 5.9533 -3.5906 3.7427 14 1 5.0633 -3.9806 3.2489 15 6 7.2656 -4.0511 3.0932 16 6 7.1262 -5.2302 4.0619 17 7 6.3395 -4.3516 4.9404 18 6 6.0839 -4.2728 6.2834 19 1 5.5251 -3.4375 6.6788 20 6 6.5480 -5.2639 7.1375 21 7 7.3118 -6.2292 6.6718 22 14 6.0883 -5.2274 8.9477 23 1 4.8973 -6.0852 9.1733 24 1 7.2248 -5.7355 9.7573 25 1 5.7774 -3.8325 9.3514 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.9597 -2.7010 0.4038 34 1 1.8239 -2.6530 2.1779 35 1 0.4432 -2.1649 1.1662 36 1 3.9337 0.3012 1.1514 37 1 3.9330 -1.3178 0.4116 38 1 6.5950 -1.6423 1.0553 39 1 5.9038 -0.0184 1.2867 40 1 7.2569 -0.5632 2.3067 41 1 5.2074 -1.8697 4.8025 42 1 6.8807 -1.7051 4.2180 43 1 7.1732 -4.3209 2.0412 44 1 8.1174 -3.4027 3.2984 45 1 8.0737 -5.5454 4.4990 46 1 6.5524 -6.0620 3.6534 47 1 7.6359 -6.9220 7.2686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231114166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = 4.556947 kcal Electronic energy + Delta-G solvation = -23244.503572 eV Core-core repulsion = 20042.867061 eV Total energy + Delta-G solvation = -3201.636511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.99393 -38.19065 -37.16015 -35.11084 -32.16105 -31.65567 -29.31761 -28.11678 -27.85759 -26.69707 -25.61509 -23.42163 -23.21052 -21.90746 -19.73308 -19.21156 -18.75367 -16.92797 -16.63633 -16.04351 -15.46612 -15.01407 -14.63400 -14.56948 -14.10035 -13.96134 -13.64119 -13.42414 -12.98834 -12.75449 -12.63401 -12.48491 -12.42726 -11.96895 -11.90702 -11.75511 -11.72979 -11.47874 -11.19827 -11.02064 -10.81469 -10.72846 -10.69859 -10.52402 -10.48333 -10.36922 -9.81662 -9.78021 -9.49020 -9.27030 -8.74859 -8.19609 -6.80414 -5.71386 -3.02448 2.90800 3.26584 3.44338 3.50000 3.51345 4.50024 4.54744 4.63243 4.71926 4.92252 4.95868 5.16857 5.27138 5.28239 5.41144 5.44682 5.45054 5.49458 5.51972 5.58422 5.63999 5.66069 5.71035 5.76087 5.78187 5.86465 5.92760 5.95685 6.04909 6.07029 6.18489 6.23987 6.35037 6.39781 6.49582 6.55669 6.64511 6.74749 6.94545 7.30034 7.46585 7.63386 7.68219 8.04585 8.49482 9.10791 9.77146 10.71724 11.46655 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.003739 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.145104 B = 7487.020112 C = 8000.353128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.156 4.156 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.531 6.531 10 N -0.614 5.614 11 C 0.081 3.919 12 C 0.116 3.884 13 C 0.135 3.865 14 H 0.042 0.958 15 C -0.167 4.167 16 C 0.156 3.844 17 N -0.601 5.601 18 C -0.214 4.214 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 14.130 -16.980 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.089 4.089 5 H 0.095 0.905 6 C -0.213 4.213 7 C -0.177 4.177 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.348 5.348 11 C -0.063 4.063 12 C -0.007 4.007 13 C 0.027 3.973 14 H 0.060 0.940 15 C -0.205 4.205 16 C 0.031 3.969 17 N -0.327 5.327 18 C -0.341 4.341 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.249 13.818 -16.146 22.151 hybrid contribution -0.173 -0.183 0.887 0.922 sum -6.422 13.635 -15.259 21.448 Atomic orbital electron populations 1.21890 0.95235 1.02021 1.01448 1.21164 0.95900 0.95916 0.98154 1.21928 1.01041 0.96188 1.01655 1.20933 0.92714 0.97280 0.97980 0.90477 1.22012 1.00569 0.95641 1.03043 1.21873 0.97472 1.02152 0.96198 1.20654 0.81971 0.79014 0.88845 1.90694 1.54562 1.48971 1.46540 1.47928 1.05703 1.57972 1.23189 1.21766 0.93433 0.98301 0.92756 1.21854 0.99449 0.93554 0.85836 1.22397 0.95049 0.90811 0.89082 0.94031 1.23686 0.97993 1.01385 0.97463 1.21893 0.96436 0.91232 0.87388 1.45635 1.55475 1.31447 1.00104 1.18936 1.29862 1.05530 0.79789 0.90144 1.24796 1.00478 0.97022 0.98145 1.69854 1.37530 1.15065 1.34228 0.86139 0.77595 0.77584 0.84754 1.21646 1.21770 1.20515 0.92710 0.93020 0.92195 0.91289 0.92649 0.92488 0.92903 0.93504 0.90476 0.92757 0.89094 0.89226 0.92621 0.91646 0.91057 0.90324 0.90545 0.92958 0.90681 0.91429 0.95903 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.85 37.16 0.33 -0.88 16 2 C -0.09 -0.78 2.51 -90.62 -0.23 -1.01 16 3 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 4 C -0.07 -0.77 1.62 -90.62 -0.15 -0.92 16 5 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 6 C -0.16 -1.92 8.66 37.16 0.32 -1.59 16 7 C -0.14 -1.46 3.61 -27.88 -0.10 -1.56 16 8 C 0.51 7.81 7.37 -10.99 -0.08 7.72 16 9 O -0.53 -10.52 13.64 5.56 0.08 -10.45 16 10 N -0.61 -9.04 2.88 -181.57 -0.52 -9.56 16 11 C 0.08 0.81 10.25 59.85 0.61 1.42 16 12 C 0.12 2.17 5.38 -4.04 -0.02 2.15 16 13 C 0.13 2.89 4.29 -72.40 -0.31 2.58 16 14 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.17 -3.17 8.00 -26.35 -0.21 -3.38 16 16 C 0.16 3.80 7.31 -8.64 -0.06 3.74 16 17 N -0.60 -15.93 3.65 -177.17 -0.65 -16.57 16 18 C -0.21 -6.20 10.54 -15.06 -0.16 -6.36 16 19 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -28.05 11.61 55.49 0.64 -27.40 16 22 Si 0.91 22.91 29.56 -169.99 -5.02 17.89 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 6.33 -51.93 -0.33 0.17 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 6.31 -51.93 -0.33 0.05 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.22 6.10 -51.93 -0.32 0.91 16 35 H 0.05 0.60 6.19 -51.93 -0.32 0.28 16 36 H 0.09 0.78 5.29 -51.93 -0.27 0.51 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.06 0.48 6.48 -51.93 -0.34 0.15 16 40 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 41 H 0.08 1.70 7.52 -51.93 -0.39 1.31 16 42 H 0.08 1.35 7.58 -51.92 -0.39 0.95 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.35 7.95 -51.93 -0.41 0.94 16 45 H 0.07 1.79 7.29 -51.93 -0.38 1.41 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -33.55 363.93 -8.31 -41.87 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.50 Total: -2.04 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.18 Total: 0.78 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.53 Total: -53.54 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.55 -8.31 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231114166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.423 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds