Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47130 * 119.99693 * 2 1 3 5 5 H 1.09000 * 109.47691 * 300.00218 * 4 2 1 6 6 C 1.53010 * 109.46876 * 60.00099 * 4 2 1 7 7 C 1.52996 * 109.47086 * 179.97438 * 4 2 1 8 8 C 1.50704 * 109.47209 * 174.57148 * 7 4 2 9 9 O 1.21274 * 119.99864 * 359.76481 * 8 7 4 10 10 N 1.34773 * 119.99920 * 179.76207 * 8 7 4 11 11 C 1.46497 * 120.00288 * 4.34093 * 10 8 7 12 12 C 1.46502 * 119.99707 * 184.34174 * 10 8 7 13 13 C 1.53000 * 109.47341 * 85.08285 * 12 10 8 14 14 H 1.08999 * 112.73543 * 315.01838 * 13 12 10 15 15 C 1.53493 * 113.47124 * 85.83687 * 13 12 10 16 16 C 1.53243 * 83.42978 * 140.67894 * 15 13 12 17 17 N 1.47062 * 88.08218 * 334.10812 * 16 15 13 18 18 C 1.36938 * 136.05692 * 207.20498 * 17 16 15 19 19 H 1.07997 * 120.00665 * 173.90966 * 18 17 16 20 20 C 1.38815 * 119.99818 * 354.18923 * 18 17 16 21 21 N 1.31612 * 119.99985 * 4.72858 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 184.73102 * 20 18 17 23 23 H 1.48498 * 109.46958 * 94.99217 * 22 20 18 24 24 H 1.48504 * 109.46998 * 214.99231 * 22 20 18 25 25 H 1.48501 * 109.46722 * 334.99025 * 22 20 18 26 26 H 1.09000 * 109.47012 * 299.99672 * 1 2 3 27 27 H 1.08999 * 109.46986 * 59.99936 * 1 2 3 28 28 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47047 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.47405 * 60.00011 * 3 2 1 31 31 H 1.09001 * 109.47236 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47302 * 299.99871 * 3 2 1 33 33 H 1.09001 * 109.46834 * 64.63966 * 6 4 2 34 34 H 1.08998 * 109.46794 * 184.64006 * 6 4 2 35 35 H 1.09001 * 109.47124 * 304.63902 * 6 4 2 36 36 H 1.09002 * 109.47371 * 54.57172 * 7 4 2 37 37 H 1.09006 * 109.47463 * 294.57219 * 7 4 2 38 38 H 1.09009 * 109.47187 * 270.00276 * 11 10 8 39 39 H 1.09000 * 109.47126 * 29.99658 * 11 10 8 40 40 H 1.08999 * 109.47406 * 149.99717 * 11 10 8 41 41 H 1.09000 * 109.47317 * 325.07884 * 12 10 8 42 42 H 1.09008 * 109.46588 * 205.07703 * 12 10 8 43 43 H 1.08997 * 114.21242 * 254.43656 * 15 13 12 44 44 H 1.08998 * 114.20347 * 27.06836 * 15 13 12 45 45 H 1.08996 * 113.38131 * 219.29287 * 16 15 13 46 46 H 1.08998 * 113.46385 * 88.93123 * 16 15 13 47 47 H 0.97006 * 120.00340 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 3.5700 -0.7217 1.2489 8 6 4.0724 -1.3125 2.5411 9 8 3.2844 -1.6914 3.3815 10 7 5.3975 -1.4197 2.7628 11 6 6.3492 -0.8761 1.7907 12 6 5.8861 -2.0799 3.9759 13 6 5.9533 -3.5906 3.7427 14 1 5.0633 -3.9806 3.2489 15 6 7.2656 -4.0511 3.0932 16 6 7.1262 -5.2302 4.0619 17 7 6.3395 -4.3516 4.9404 18 6 6.0839 -4.2728 6.2834 19 1 5.5251 -3.4375 6.6788 20 6 6.5480 -5.2639 7.1375 21 7 7.3118 -6.2292 6.6718 22 14 6.0883 -5.2274 8.9477 23 1 4.8973 -6.0852 9.1733 24 1 7.2248 -5.7355 9.7573 25 1 5.7774 -3.8325 9.3514 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.9597 -2.7010 0.4038 34 1 1.8239 -2.6530 2.1779 35 1 0.4432 -2.1649 1.1662 36 1 3.9337 0.3012 1.1514 37 1 3.9330 -1.3178 0.4116 38 1 6.5950 -1.6423 1.0553 39 1 5.9038 -0.0184 1.2867 40 1 7.2569 -0.5632 2.3067 41 1 5.2074 -1.8697 4.8025 42 1 6.8807 -1.7051 4.2180 43 1 7.1732 -4.3209 2.0412 44 1 8.1174 -3.4027 3.2984 45 1 8.0737 -5.5454 4.4990 46 1 6.5524 -6.0620 3.6534 47 1 7.6359 -6.9220 7.2686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231114166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -15.995661 kcal Electronic energy + Delta-G solvation = -23245.394800 eV Core-core repulsion = 20042.867061 eV Total energy + Delta-G solvation = -3202.527739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21363 -39.83224 -38.11828 -36.37755 -34.30773 -32.52726 -30.49182 -29.92635 -29.09912 -27.52200 -26.65302 -25.44419 -24.37391 -23.22528 -21.10532 -20.50229 -19.91781 -18.72479 -17.90428 -17.37333 -16.88811 -16.60042 -15.92301 -15.71181 -15.47557 -15.22099 -14.79733 -14.57661 -14.30399 -13.93522 -13.83106 -13.61933 -13.46913 -13.17545 -13.13047 -12.97240 -12.75120 -12.68495 -12.61562 -12.56922 -12.40874 -12.22296 -11.94815 -11.85600 -11.64292 -11.50755 -11.33496 -11.24490 -11.16195 -10.90731 -10.56151 -9.53075 -8.92246 -7.94626 -5.26764 1.40358 1.43467 1.52005 1.74155 2.10506 2.46374 3.25805 3.47464 3.61549 3.82702 3.85385 3.95891 4.11009 4.24706 4.26480 4.34309 4.43895 4.52010 4.59603 4.62283 4.71240 4.74296 4.79010 4.80406 4.87040 4.92433 4.96936 4.97758 5.03569 5.06236 5.08313 5.12262 5.15066 5.22467 5.27360 5.33453 5.46654 5.48540 5.54583 5.61240 5.63569 5.75881 5.92361 6.55467 6.89546 7.33047 7.57382 8.59376 9.23399 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.003739 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.145104 B = 7487.020112 C = 8000.353128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.068 4.068 5 H 0.051 0.949 6 C -0.153 4.153 7 C -0.125 4.125 8 C 0.497 3.503 9 O -0.588 6.588 10 N -0.612 5.612 11 C 0.071 3.929 12 C 0.132 3.868 13 C 0.135 3.865 14 H 0.020 0.980 15 C -0.125 4.125 16 C 0.147 3.853 17 N -0.632 5.632 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.974 3.026 23 H -0.291 1.291 24 H -0.287 1.287 25 H -0.268 1.268 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.040 0.960 46 H 0.008 0.992 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 16.329 -19.612 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.208 4.208 4 C -0.087 4.087 5 H 0.070 0.930 6 C -0.210 4.210 7 C -0.164 4.164 8 C 0.287 3.713 9 O -0.468 6.468 10 N -0.345 5.345 11 C -0.070 4.070 12 C 0.007 3.993 13 C 0.028 3.972 14 H 0.038 0.962 15 C -0.163 4.163 16 C 0.021 3.979 17 N -0.358 5.358 18 C -0.354 4.354 19 H 0.093 0.907 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.213 1.213 25 H -0.193 1.193 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.561 16.062 -18.834 25.370 hybrid contribution -0.435 -0.875 1.658 1.924 sum -5.996 15.187 -17.176 23.699 Atomic orbital electron populations 1.21910 0.95322 1.01791 1.01778 1.21115 0.95850 0.96522 0.96903 1.21933 1.01813 0.95134 1.01883 1.20907 0.93195 0.96171 0.98476 0.93015 1.21958 1.01215 0.96657 1.01171 1.21915 0.96903 1.03797 0.93802 1.21622 0.81690 0.78163 0.89844 1.90683 1.56074 1.51343 1.48704 1.48014 1.06546 1.57293 1.22674 1.22146 0.92981 0.99853 0.92048 1.21390 0.99132 0.92027 0.86750 1.22463 0.95507 0.92128 0.87130 0.96201 1.23438 0.96760 0.97825 0.98228 1.21937 0.94656 0.92649 0.88657 1.46035 1.56247 1.32983 1.00522 1.19207 1.29119 1.05374 0.81662 0.90706 1.25610 1.00834 0.96950 1.02412 1.70021 1.38719 1.15725 1.35447 0.85121 0.76993 0.77914 0.79740 1.21840 1.21347 1.19303 0.93578 0.91505 0.92747 0.89862 0.93551 0.91242 0.91621 0.92250 0.94743 0.92112 0.86016 0.86699 0.90997 0.88338 0.90058 0.94436 0.89157 0.89049 0.88750 0.94131 0.97457 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.85 71.98 0.64 -1.55 16 2 C -0.09 -1.21 2.51 -10.79 -0.03 -1.23 16 3 C -0.15 -1.71 8.85 71.98 0.64 -1.07 16 4 C -0.07 -1.42 1.62 -10.79 -0.02 -1.44 16 5 H 0.05 1.33 7.94 -2.39 -0.02 1.32 16 6 C -0.15 -3.77 8.66 71.99 0.62 -3.15 16 7 C -0.12 -2.31 3.61 29.85 0.11 -2.20 16 8 C 0.50 14.91 7.37 87.66 0.65 15.56 16 9 O -0.59 -24.37 13.64 -3.01 -0.04 -24.41 16 10 N -0.61 -16.91 2.88 -846.75 -2.44 -19.36 16 11 C 0.07 1.09 10.25 127.77 1.31 2.40 16 12 C 0.13 4.89 5.38 86.38 0.46 5.35 16 13 C 0.13 5.80 4.29 41.79 0.18 5.98 16 14 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 15 C -0.12 -4.48 8.00 30.84 0.25 -4.24 16 16 C 0.15 7.26 7.31 83.09 0.61 7.87 16 17 N -0.63 -34.38 3.65 -714.44 -2.61 -36.99 16 18 C -0.23 -13.49 10.54 84.03 0.89 -12.61 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.95 -59.65 11.61 21.65 0.25 -59.40 16 22 Si 0.97 48.26 29.56 68.60 2.03 50.29 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.84 6.33 -2.39 -0.02 0.82 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 6.31 -2.39 -0.02 0.60 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.03 1.15 6.10 -2.39 -0.01 1.13 16 35 H 0.06 1.36 6.19 -2.39 -0.01 1.35 16 36 H 0.12 1.53 5.29 -2.39 -0.01 1.52 16 37 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 39 H 0.10 0.90 6.48 -2.39 -0.02 0.88 16 40 H 0.08 1.14 7.86 -2.39 -0.02 1.12 16 41 H 0.04 1.69 7.52 -2.39 -0.02 1.68 16 42 H 0.09 3.06 7.58 -2.38 -0.02 3.05 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.09 3.08 7.95 -2.39 -0.02 3.06 16 45 H 0.04 2.20 7.29 -2.39 -0.02 2.18 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -78.60 363.93 4.87 -73.73 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.92 Total: 9.88 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.77 Total: 6.25 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.80 Total: -115.74 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.04 Total: -24.41 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -78.60 4.87 -73.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231114166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.733 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds