Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 C 1.52998 * 109.46727 * 119.99769 * 2 1 3 5 5 H 1.09002 * 109.47471 * 299.99912 * 4 2 1 6 6 C 1.52994 * 109.47114 * 60.00422 * 4 2 1 7 7 C 1.53007 * 109.46989 * 180.02562 * 4 2 1 8 8 C 1.50696 * 109.47054 * 174.99882 * 7 4 2 9 9 O 1.21282 * 120.00212 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99928 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00030 * 354.97975 * 10 8 7 12 12 C 1.46500 * 120.00343 * 174.98650 * 10 8 7 13 13 C 1.53004 * 109.46917 * 275.14172 * 12 10 8 14 14 H 1.09004 * 112.73525 * 44.01555 * 13 12 10 15 15 C 1.53496 * 113.51847 * 273.22879 * 13 12 10 16 16 C 1.53756 * 83.25504 * 218.97114 * 15 13 12 17 17 N 1.47060 * 113.46859 * 174.76182 * 13 12 10 18 18 C 1.36933 * 136.05824 * 321.92633 * 17 13 12 19 19 H 1.08000 * 120.00214 * 355.14634 * 18 17 13 20 20 C 1.38812 * 120.00004 * 175.42533 * 18 17 13 21 21 N 1.31624 * 119.99965 * 359.72528 * 20 18 17 22 22 Si 1.86797 * 120.00275 * 179.72212 * 20 18 17 23 23 H 1.48497 * 109.46965 * 59.99959 * 22 20 18 24 24 H 1.48502 * 109.47524 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47361 * 300.00259 * 22 20 18 26 26 H 1.08994 * 109.47385 * 300.00233 * 1 2 3 27 27 H 1.09000 * 109.46867 * 60.00407 * 1 2 3 28 28 H 1.09001 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47385 * 239.99767 * 2 1 3 30 30 H 1.09008 * 109.47147 * 59.99671 * 3 2 1 31 31 H 1.08994 * 109.47142 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47241 * 300.00191 * 3 2 1 33 33 H 1.09009 * 109.47236 * 179.97438 * 6 4 2 34 34 H 1.08991 * 109.47086 * 299.99469 * 6 4 2 35 35 H 1.09001 * 109.47183 * 60.00188 * 6 4 2 36 36 H 1.09004 * 109.47127 * 55.00261 * 7 4 2 37 37 H 1.08995 * 109.47007 * 295.00290 * 7 4 2 38 38 H 1.09005 * 109.47620 * 270.00388 * 11 10 8 39 39 H 1.09006 * 109.46970 * 29.99961 * 11 10 8 40 40 H 1.08998 * 109.47386 * 150.00030 * 11 10 8 41 41 H 1.08995 * 109.47348 * 155.13986 * 12 10 8 42 42 H 1.09000 * 109.47025 * 35.14035 * 12 10 8 43 43 H 1.08995 * 114.20707 * 332.72828 * 15 13 12 44 44 H 1.09000 * 114.20928 * 105.35969 * 15 13 12 45 45 H 1.09001 * 113.46902 * 271.50285 * 16 15 13 46 46 H 1.08999 * 113.55133 * 140.98363 * 16 15 13 47 47 H 0.96998 * 120.00100 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 3.5700 -0.7207 1.2497 8 6 4.0722 -1.3211 2.5374 9 8 3.2840 -1.7114 3.3725 10 7 5.3973 -1.4243 2.7612 11 6 6.3486 -1.0554 1.7099 12 6 5.8864 -1.9054 4.0556 13 6 5.9565 -0.7368 5.0406 14 1 5.0748 -0.0972 4.9990 15 6 7.2788 0.0401 4.9762 16 6 7.1124 0.0932 6.5038 17 7 6.3215 -1.1429 6.4061 18 6 6.0428 -2.2026 7.2273 19 1 5.3397 -2.9595 6.9124 20 6 6.6596 -2.3011 8.4670 21 7 7.5164 -1.3786 8.8508 22 14 6.2736 -3.7426 9.5905 23 1 6.6337 -5.0117 8.9088 24 1 7.0562 -3.6151 10.8461 25 1 4.8233 -3.7467 9.9101 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.8936 -2.6777 2.1391 34 1 0.4401 -2.1637 1.2492 35 1 1.8934 -2.6775 0.3593 36 1 3.9330 0.3032 1.1603 37 1 3.9337 -1.3098 0.4079 38 1 6.5689 -1.9289 1.0963 39 1 5.9156 -0.2732 1.0862 40 1 7.2690 -0.6894 2.1648 41 1 6.8799 -2.3360 3.9313 42 1 5.2066 -2.6653 4.4411 43 1 8.1287 -0.5517 4.6363 44 1 7.2042 1.0095 4.4836 45 1 6.5355 0.9515 6.8481 46 1 8.0482 -0.0322 7.0485 47 1 7.9477 -1.4475 9.7169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231114168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = 4.836271 kcal Electronic energy + Delta-G solvation = -23235.605877 eV Core-core repulsion = 20033.981478 eV Total energy + Delta-G solvation = -3201.624399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99544 -38.17769 -37.14677 -35.10432 -32.15475 -31.65538 -29.30577 -28.11281 -27.85495 -26.69241 -25.62485 -23.41260 -23.20479 -21.89504 -19.74423 -19.22712 -18.72470 -16.95677 -16.56569 -15.97383 -15.71799 -14.81589 -14.73766 -14.47347 -14.16630 -13.91964 -13.63389 -13.39222 -13.01557 -12.79176 -12.62559 -12.45712 -12.41312 -11.98701 -11.89155 -11.79802 -11.66892 -11.47315 -11.18777 -11.04430 -10.80224 -10.71470 -10.70259 -10.54016 -10.48428 -10.39436 -9.80046 -9.74254 -9.58616 -9.24751 -8.72121 -8.18816 -6.80617 -5.69459 -3.02752 2.90986 3.26903 3.44942 3.48697 3.50515 4.50037 4.54795 4.63652 4.71935 4.92864 4.98949 5.19022 5.27325 5.30012 5.41055 5.41319 5.46108 5.49407 5.53587 5.58777 5.60133 5.66291 5.72040 5.76735 5.78724 5.85908 5.92219 5.96322 6.05464 6.07284 6.17185 6.24311 6.35490 6.39670 6.47872 6.53626 6.62501 6.74921 6.93871 7.29527 7.49285 7.64644 7.68802 8.06399 8.49639 9.11216 9.77618 10.71678 11.47195 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.003771 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.191110 B = 7424.092772 C = 7982.823793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.071 4.071 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.532 6.532 10 N -0.614 5.614 11 C 0.079 3.921 12 C 0.117 3.883 13 C 0.135 3.865 14 H 0.042 0.958 15 C -0.166 4.166 16 C 0.148 3.852 17 N -0.600 5.600 18 C -0.214 4.214 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.077 0.923 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 4.230 -21.307 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.090 4.090 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.177 4.177 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.348 5.348 11 C -0.064 4.064 12 C -0.007 4.007 13 C 0.027 3.973 14 H 0.059 0.941 15 C -0.205 4.205 16 C 0.023 3.977 17 N -0.326 5.326 18 C -0.341 4.341 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.095 0.905 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.540 3.799 -20.522 21.871 hybrid contribution -0.153 -0.585 0.670 0.903 sum -6.693 3.214 -19.851 21.194 Atomic orbital electron populations 1.21881 0.95239 1.01930 1.01518 1.21164 0.95890 0.95999 0.98010 1.21934 1.01102 0.96120 1.01734 1.20940 0.92734 0.97198 0.98129 0.90352 1.21995 1.00760 0.95846 1.02519 1.21854 0.97474 1.02219 0.96155 1.20664 0.82004 0.78997 0.88829 1.90692 1.54564 1.48251 1.47301 1.47943 1.05689 1.65969 1.15200 1.21778 0.93902 0.99923 0.90839 1.21838 0.99560 0.97996 0.81264 1.22404 0.95049 0.93173 0.86668 0.94082 1.23762 0.97907 0.98660 1.00123 1.22137 0.96814 0.87900 0.90890 1.45653 1.56731 1.19644 1.10533 1.18895 1.20414 0.98180 0.96637 0.90319 1.24773 0.99342 0.98623 0.97704 1.69818 1.31383 1.34580 1.21074 0.86203 0.77658 0.81883 0.80071 1.21051 1.21599 1.21186 0.92638 0.93025 0.92314 0.91379 0.92543 0.92440 0.92899 0.90547 0.92793 0.93665 0.88873 0.89454 0.92997 0.91447 0.90711 0.90488 0.90270 0.90602 0.93010 0.96238 0.90524 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.09 -0.78 2.51 -90.62 -0.23 -1.01 16 3 C -0.15 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.07 -0.78 1.62 -90.62 -0.15 -0.93 16 5 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 6 C -0.15 -1.80 8.58 37.15 0.32 -1.48 16 7 C -0.14 -1.47 3.42 -27.88 -0.10 -1.57 16 8 C 0.51 7.83 7.35 -10.99 -0.08 7.75 16 9 O -0.53 -10.54 13.60 5.56 0.08 -10.46 16 10 N -0.61 -9.10 2.88 -181.57 -0.52 -9.62 16 11 C 0.08 0.80 10.24 59.85 0.61 1.41 16 12 C 0.12 2.19 5.34 -4.04 -0.02 2.17 16 13 C 0.14 2.90 4.27 -72.41 -0.31 2.59 16 14 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.17 -3.17 8.03 -26.08 -0.21 -3.38 16 16 C 0.15 3.61 7.53 -8.38 -0.06 3.55 16 17 N -0.60 -15.92 3.64 -176.85 -0.64 -16.57 16 18 C -0.21 -6.21 10.55 -15.06 -0.16 -6.37 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.97 11.42 55.49 0.63 -27.34 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.41 6.32 -51.93 -0.33 0.09 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.13 5.95 -51.92 -0.31 0.83 16 34 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.86 5.61 -51.93 -0.29 0.57 16 37 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 40 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.08 1.38 7.77 -51.93 -0.40 0.97 16 42 H 0.08 1.73 7.51 -51.93 -0.39 1.34 16 43 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 2.04 6.92 -51.93 -0.36 1.68 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -33.39 364.01 -8.34 -41.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.52 Total: -1.73 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.18 Total: 0.65 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.53 Total: -53.52 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.39 -8.34 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231114168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.561 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds