Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47604 * 2 1 4 4 C 1.50695 * 109.47567 * 120.00668 * 2 1 3 5 5 H 1.07993 * 120.00202 * 119.99137 * 4 2 1 6 6 C 1.37880 * 119.99724 * 299.99729 * 4 2 1 7 7 N 1.31512 * 120.00213 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47028 * 90.00475 * 8 6 4 10 10 H 1.48507 * 109.47077 * 210.00152 * 8 6 4 11 11 H 1.48499 * 109.47445 * 329.99948 * 8 6 4 12 12 N 1.46908 * 109.46903 * 240.00845 * 2 1 3 13 13 C 1.46893 * 111.00333 * 151.72056 * 12 2 1 14 14 C 1.53001 * 109.46684 * 274.84010 * 13 12 2 15 15 C 1.53006 * 109.46953 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46769 * 60.00267 * 15 14 13 17 17 N 1.46898 * 109.46965 * 179.97438 * 16 15 14 18 18 C 1.47017 * 111.00141 * 58.63789 * 17 16 15 19 19 C 1.53092 * 109.25896 * 177.60918 * 18 17 16 20 20 O 1.43013 * 109.26296 * 56.84450 * 19 18 17 21 21 C 1.43016 * 113.73835 * 301.33228 * 20 19 18 22 22 C 1.47014 * 111.00054 * 294.99638 * 17 16 15 23 23 C 1.52999 * 109.47112 * 299.99991 * 16 15 14 24 24 C 1.52998 * 109.47468 * 60.00186 * 23 16 15 25 25 H 1.09007 * 109.46366 * 303.08979 * 1 2 3 26 26 H 1.08998 * 109.47034 * 183.08908 * 1 2 3 27 27 H 1.09001 * 109.47332 * 63.07961 * 1 2 3 28 28 H 0.96999 * 120.00069 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99156 * 275.67433 * 12 2 1 30 30 H 1.09001 * 109.47180 * 34.83918 * 13 12 2 31 31 H 1.09001 * 109.47237 * 299.99873 * 14 13 12 32 32 H 1.09005 * 109.47232 * 60.00531 * 14 13 12 33 33 H 1.09001 * 109.47316 * 300.00157 * 15 14 13 34 34 H 1.09005 * 109.47111 * 179.97438 * 15 14 13 35 35 H 1.09001 * 109.47291 * 59.99874 * 16 15 14 36 36 H 1.09007 * 109.49959 * 297.53813 * 18 17 16 37 37 H 1.08992 * 109.50595 * 57.66568 * 18 17 16 38 38 H 1.09007 * 109.50597 * 296.90951 * 19 18 17 39 39 H 1.09002 * 109.54256 * 176.80039 * 19 18 17 40 40 H 1.09002 * 109.50483 * 298.73373 * 21 20 19 41 41 H 1.09002 * 109.54329 * 178.62742 * 21 20 19 42 42 H 1.09000 * 109.51262 * 302.32975 * 22 17 16 43 43 H 1.09001 * 109.50458 * 62.46137 * 22 17 16 44 44 H 1.09001 * 109.46947 * 300.00094 * 23 16 15 45 45 H 1.09003 * 109.46753 * 180.02562 * 23 16 15 46 46 H 1.08995 * 109.47215 * 180.02562 * 24 23 16 47 47 H 1.09001 * 109.47112 * 60.00008 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3216 -1.1207 4.0077 9 1 3.6300 -0.5462 4.4121 10 1 1.3434 -0.9497 5.1119 11 1 2.4861 -2.5665 3.7116 12 7 2.0197 -0.6924 -1.1996 13 6 3.3338 -0.1766 -1.6057 14 6 3.1462 1.0632 -2.4825 15 6 4.5150 1.6009 -2.9049 16 6 5.2633 0.5257 -3.6954 17 7 6.5772 1.0420 -4.1016 18 6 7.3710 1.4422 -2.9306 19 6 8.7507 1.9168 -3.3942 20 8 8.5918 2.9853 -4.3313 21 6 7.8242 2.6302 -5.4846 22 6 6.4350 2.1628 -5.0423 23 6 5.4508 -0.7141 -2.8187 24 6 4.0821 -1.2518 -2.3962 25 1 -0.3632 0.5611 0.8611 26 1 -0.3633 -1.0262 0.0554 27 1 -0.3634 0.4653 -0.9163 28 1 0.7084 1.1605 3.4845 29 1 2.0523 -1.6902 -1.0531 30 1 3.9096 0.0891 -0.7192 31 1 2.5703 0.7975 -3.3690 32 1 2.6134 1.8294 -1.9191 33 1 5.0905 1.8666 -2.0182 34 1 4.3813 2.4839 -3.5300 35 1 4.6878 0.2599 -4.5821 36 1 6.8641 2.2529 -2.4072 37 1 7.4853 0.5905 -2.2601 38 1 9.2788 1.0906 -3.8703 39 1 9.3230 2.2679 -2.5355 40 1 8.3253 1.8248 -6.0215 41 1 7.7256 3.4971 -6.1380 42 1 5.8661 1.8372 -5.9132 43 1 5.9132 2.9850 -4.5525 44 1 6.0263 -0.4484 -1.9319 45 1 5.9844 -1.4799 -3.3817 46 1 4.2157 -2.1347 -1.7712 47 1 3.5066 -1.5175 -3.2829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256681174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = -53.926350 kcal Electronic energy + Delta-G solvation = -23555.683361 eV Core-core repulsion = 20351.510824 eV Total energy + Delta-G solvation = -3204.172537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21233 -38.26511 -36.04060 -34.10411 -31.98551 -31.39735 -30.49939 -29.49727 -27.32766 -25.21125 -24.94064 -24.26416 -22.63258 -21.51489 -20.18941 -19.78423 -18.97517 -16.81088 -16.55023 -16.29195 -15.26298 -15.19694 -15.09084 -14.76018 -14.51759 -14.32311 -13.98851 -13.68125 -13.34725 -12.88464 -12.44743 -12.32863 -11.97963 -11.82031 -11.61701 -11.56884 -11.50184 -11.23274 -11.09743 -10.93725 -10.77071 -10.73706 -10.51011 -10.32755 -10.11853 -10.09892 -9.87725 -9.68172 -9.55222 -9.05851 -8.41590 -8.32971 -7.26080 -6.00868 -4.12799 3.25376 3.32810 3.35431 3.60460 3.76892 4.38529 4.68233 4.78294 4.81728 4.98282 5.00109 5.05058 5.10699 5.16540 5.27002 5.36376 5.43513 5.45645 5.54080 5.55363 5.65301 5.70219 5.73177 5.80719 5.82615 5.90420 6.10539 6.23708 6.25950 6.33901 6.44585 6.53027 6.74391 6.86679 6.90218 6.91772 6.95773 6.98936 7.16371 7.34071 7.53483 7.74858 8.09058 8.17737 8.34263 8.68266 9.00861 9.54947 11.00643 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.003811 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.837604 B = 7345.295685 C = 7797.494288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.209 3.791 3 H 0.030 0.970 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.690 5.690 13 C 0.093 3.907 14 C -0.098 4.098 15 C -0.149 4.149 16 C 0.088 3.912 17 N -0.531 5.531 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.065 3.935 22 C 0.014 3.986 23 C -0.106 4.106 24 C -0.117 4.117 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.012 0.988 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 1.329 -14.391 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.101 3.899 3 H 0.048 0.952 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.319 5.319 13 C -0.017 4.017 14 C -0.137 4.137 15 C -0.189 4.189 16 C -0.020 4.020 17 N -0.255 5.255 18 C -0.119 4.119 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.114 4.114 23 C -0.144 4.144 24 C -0.155 4.155 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.019 1.664 -14.904 19.219 hybrid contribution 0.236 -0.440 2.129 2.187 sum 12.255 1.224 -12.775 17.745 Atomic orbital electron populations 1.21678 0.97947 0.99288 0.99281 1.19151 0.92266 0.93982 0.84536 0.95183 1.21843 1.31754 1.12719 0.91948 0.92927 1.24933 0.94833 0.94871 0.98922 1.69891 1.36351 1.22824 1.23413 0.86661 0.78610 0.80123 0.82979 1.20781 1.21134 1.19977 1.60929 1.23633 1.08502 1.38863 1.21317 0.90841 0.93608 0.95963 1.21423 0.94799 0.97816 0.99672 1.22205 0.98099 0.98388 1.00197 1.21778 0.87763 0.94605 0.97884 1.62510 1.16462 1.32116 1.14433 1.22878 0.94697 1.00870 0.93467 1.22681 0.95784 0.90131 0.92688 1.87972 1.73145 1.37239 1.32294 1.22650 0.90366 1.00401 0.87834 1.22790 0.97965 0.93383 0.97307 1.21541 0.97601 0.96382 0.98891 1.21690 0.95124 0.98365 1.00363 0.90339 0.95679 0.96908 0.92925 0.85498 0.93815 0.92077 0.92015 0.91885 0.92449 0.89926 0.93253 0.89190 0.92475 0.88623 0.92486 0.88719 0.89792 0.93473 0.92022 0.91595 0.92063 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.25 37.16 0.34 -2.72 16 2 C 0.21 5.22 2.38 -68.86 -0.16 5.06 16 3 H 0.03 0.83 7.13 -51.93 -0.37 0.46 16 4 C -0.54 -14.71 8.42 -34.44 -0.29 -15.00 16 5 H 0.05 1.41 7.69 -52.49 -0.40 1.01 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.26 11.35 55.43 0.63 -24.63 16 8 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.69 -14.45 6.07 -100.95 -0.61 -15.06 16 13 C 0.09 1.69 2.30 -67.72 -0.16 1.53 16 14 C -0.10 -1.62 5.41 -26.73 -0.14 -1.76 16 15 C -0.15 -2.06 4.50 -26.73 -0.12 -2.18 16 16 C 0.09 1.07 2.23 -67.71 -0.15 0.92 16 17 N -0.53 -6.02 4.72 -226.33 -1.07 -7.09 16 18 C 0.01 0.10 4.86 -3.71 -0.02 0.08 16 19 C 0.06 0.65 7.01 37.21 0.26 0.91 16 20 O -0.39 -4.50 10.83 -35.23 -0.38 -4.88 16 21 C 0.06 0.61 7.01 37.21 0.26 0.87 16 22 C 0.01 0.14 5.31 -3.71 -0.02 0.12 16 23 C -0.11 -1.35 5.01 -26.73 -0.13 -1.48 16 24 C -0.12 -1.72 5.19 -26.73 -0.14 -1.85 16 25 H 0.08 2.12 6.16 -51.92 -0.32 1.80 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.33 6.80 7.95 -39.29 -0.31 6.49 16 30 H 0.04 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.15 7.48 -51.93 -0.39 0.76 16 33 H 0.06 0.93 6.44 -51.93 -0.33 0.60 16 34 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 35 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 36 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 37 H 0.09 0.98 6.22 -51.93 -0.32 0.66 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.76 8.13 -51.93 -0.42 0.33 16 43 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 44 H 0.06 0.82 6.38 -51.93 -0.33 0.48 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -28.42 346.72 -10.20 -38.62 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.41 Total: 5.43 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.57 Total: -13.77 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -1.05 Total: -46.78 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.42 -10.20 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256681174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.311 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds