Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50699 * 109.46935 * 239.99736 * 2 1 3 5 5 O 1.21281 * 120.00182 * 251.46454 * 4 2 1 6 6 N 1.34772 * 119.99933 * 71.47024 * 4 2 1 7 7 C 1.46495 * 120.00221 * 7.35812 * 6 4 2 8 8 C 1.46501 * 120.00100 * 187.36019 * 6 4 2 9 9 C 1.50697 * 109.47097 * 89.99777 * 8 6 4 10 10 H 1.07998 * 120.00397 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99920 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00015 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99793 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47076 * 89.99844 * 13 11 9 15 15 H 1.48501 * 109.46891 * 209.99417 * 13 11 9 16 16 H 1.48491 * 109.47347 * 329.99882 * 13 11 9 17 17 N 1.46902 * 109.46984 * 119.99843 * 2 1 3 18 18 C 1.48188 * 111.07010 * 193.64954 * 17 2 1 19 19 C 1.53935 * 86.21924 * 137.46166 * 18 17 2 20 20 C 1.53002 * 113.73437 * 222.00876 * 19 18 17 21 21 C 1.53006 * 113.73276 * 90.73004 * 19 18 17 22 22 C 1.47962 * 110.99884 * 292.93962 * 17 2 1 23 23 C 1.52996 * 113.75671 * 108.10092 * 22 17 2 24 24 C 1.52999 * 113.76012 * 336.84420 * 22 17 2 25 25 H 1.09001 * 109.47046 * 67.68669 * 1 2 3 26 26 H 1.08998 * 109.47009 * 187.68787 * 1 2 3 27 27 H 1.09001 * 109.46893 * 307.68308 * 1 2 3 28 28 H 1.09002 * 109.47267 * 64.60933 * 7 6 4 29 29 H 1.09000 * 109.47421 * 184.60233 * 7 6 4 30 30 H 1.09002 * 109.47637 * 304.61037 * 7 6 4 31 31 H 1.08998 * 109.47310 * 210.00237 * 8 6 4 32 32 H 1.09001 * 109.46851 * 329.99676 * 8 6 4 33 33 H 0.97001 * 120.00323 * 179.97438 * 12 11 9 34 34 H 1.08992 * 113.65842 * 23.13983 * 18 17 2 35 35 H 1.09001 * 113.92262 * 251.81781 * 18 17 2 36 36 H 1.08996 * 109.47294 * 156.73184 * 20 19 18 37 37 H 1.09002 * 109.46998 * 276.73283 * 20 19 18 38 38 H 1.08999 * 109.46800 * 36.72858 * 20 19 18 39 39 H 1.09000 * 109.47043 * 323.26925 * 21 19 18 40 40 H 1.08997 * 109.47019 * 83.27020 * 21 19 18 41 41 H 1.09001 * 109.47186 * 203.26702 * 21 19 18 42 42 H 1.09001 * 109.47230 * 278.67863 * 23 22 17 43 43 H 1.08993 * 109.47260 * 38.69030 * 23 22 17 44 44 H 1.09004 * 109.46699 * 158.68548 * 23 22 17 45 45 H 1.09000 * 109.47204 * 184.69620 * 24 22 17 46 46 H 1.08995 * 109.47286 * 304.69943 * 24 22 17 47 47 H 1.09006 * 109.46900 * 64.69399 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5493 -1.8031 -1.1313 6 7 1.9072 -0.1316 -2.4411 7 6 1.4328 1.2504 -2.5467 8 6 2.2456 -0.8844 -3.6515 9 6 1.0222 -1.6088 -4.1509 10 1 0.0861 -1.5173 -3.6202 11 6 1.0977 -2.3876 -5.2863 12 7 0.0302 -3.0202 -5.7219 13 14 2.7167 -2.5453 -6.2047 14 1 3.4823 -3.6972 -5.6641 15 1 2.4473 -2.7639 -7.6486 16 1 3.5074 -1.3004 -6.0315 17 7 2.0197 -0.6925 1.1995 18 6 3.4642 -0.4371 1.4097 19 6 3.1134 -0.2683 2.8991 20 6 3.8321 0.9028 3.5721 21 6 3.2025 -1.5667 3.7037 22 6 1.6888 0.0696 2.4239 23 6 0.5880 -0.5722 3.2706 24 6 1.4589 1.5620 2.1778 25 1 -0.3633 0.3902 -0.9507 26 1 -0.3633 -1.0184 0.1375 27 1 -0.3633 0.6282 0.8133 28 1 2.1552 1.9193 -2.0790 29 1 1.3191 1.5162 -3.5977 30 1 0.4712 1.3441 -2.0421 31 1 2.5999 -0.1971 -4.4197 32 1 3.0281 -1.6078 -3.4225 33 1 0.0832 -3.5678 -6.5208 34 1 3.8201 0.4777 0.9361 35 1 4.0999 -1.2980 1.2031 36 1 3.2658 1.2222 4.4470 37 1 4.8295 0.5886 3.8798 38 1 3.9130 1.7318 2.8691 39 1 2.8598 -2.3992 3.0891 40 1 4.2363 -1.7380 4.0037 41 1 2.5749 -1.4879 4.5913 42 1 -0.3863 -0.3171 2.8539 43 1 0.7122 -1.6551 3.2679 44 1 0.6539 -0.2016 4.2936 45 1 1.3036 2.0677 3.1308 46 1 2.3301 1.9865 1.6789 47 1 0.5791 1.6951 1.5482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319107630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = 7.077517 kcal Electronic energy + Delta-G solvation = -24276.322638 eV Core-core repulsion = 21074.795428 eV Total energy + Delta-G solvation = -3201.527211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38273 -38.75403 -34.85891 -34.07361 -32.45932 -31.43512 -30.35215 -28.79983 -28.28508 -26.19407 -26.00145 -24.60749 -23.64398 -22.41566 -20.74263 -18.24546 -17.21908 -16.91708 -16.58266 -16.03092 -15.47568 -15.05111 -14.81233 -14.61338 -14.16298 -13.97331 -13.47747 -12.95313 -12.82497 -12.66274 -12.62709 -12.47037 -12.34614 -12.18305 -12.11774 -11.89242 -11.80610 -11.69532 -11.60298 -11.41243 -11.27385 -10.99208 -10.91584 -10.78510 -10.49415 -10.19720 -10.11042 -9.93104 -9.51066 -8.91625 -8.56940 -8.43082 -7.62864 -6.06829 -4.05356 3.30607 3.36501 3.38798 3.41069 3.66261 4.03712 4.28214 4.41549 4.57434 4.94427 4.95383 5.01257 5.08146 5.18623 5.25037 5.29523 5.31903 5.41377 5.51981 5.55952 5.58860 5.63150 5.67443 5.73481 5.77637 5.78494 5.81242 5.89560 5.93192 5.95702 6.04878 6.05608 6.11378 6.18555 6.29266 6.45900 6.47495 6.61931 6.71768 6.97911 7.19870 7.41612 7.63640 8.31016 8.49985 8.95958 9.07669 9.53892 11.06601 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004462 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.056465 B = 6274.097980 C = 6454.060625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 H 0.065 0.935 4 C 0.516 3.484 5 O -0.524 6.524 6 N -0.602 5.602 7 C 0.082 3.918 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.439 5.439 18 C 0.016 3.984 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.122 4.122 22 C 0.060 3.940 23 C -0.125 4.125 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 12.119 18.329 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 H 0.083 0.917 4 C 0.301 3.699 5 O -0.399 6.399 6 N -0.335 5.335 7 C -0.062 4.062 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.162 5.162 18 C -0.113 4.113 19 C -0.086 4.086 20 C -0.194 4.194 21 C -0.180 4.180 22 C -0.030 4.030 23 C -0.182 4.182 24 C -0.221 4.221 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.268 10.726 18.094 21.463 hybrid contribution 0.877 0.811 -0.841 1.461 sum 5.145 11.537 17.254 21.384 Atomic orbital electron populations 1.21969 0.92318 1.03662 1.02377 1.22160 0.97691 0.96584 0.91583 0.91700 1.20084 0.79613 0.86253 0.83919 1.90647 1.42955 1.20454 1.85816 1.47796 1.65479 1.13263 1.06969 1.21733 0.98309 0.82885 1.03230 1.19670 0.97435 0.91945 0.81396 1.21352 0.96342 1.28525 1.10480 0.90775 1.24855 0.96339 0.94842 0.96955 1.69896 1.28638 1.31100 1.24001 0.86847 0.84415 0.79298 0.79107 1.19895 1.21086 1.19128 1.68700 1.05265 1.42966 0.99233 1.23997 0.92085 1.01071 0.94138 1.22337 0.94796 0.96413 0.95006 1.21776 1.00008 0.97270 1.00370 1.21539 1.01152 0.95979 0.99288 1.22832 0.95314 0.92490 0.92374 1.21606 0.97046 1.01646 0.97932 1.22228 1.02424 0.95022 1.02451 0.91049 0.91035 0.91674 0.93935 0.90353 0.92469 0.95405 0.94556 0.92587 0.92019 0.89060 0.92455 0.92522 0.92576 0.91155 0.92854 0.92468 0.92686 0.91235 0.92485 0.91680 0.92325 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.55 37.16 0.32 -1.83 16 2 C 0.03 0.51 0.99 -68.86 -0.07 0.44 16 3 H 0.07 0.89 5.19 -51.93 -0.27 0.62 16 4 C 0.52 10.96 6.62 -10.99 -0.07 10.89 16 5 O -0.52 -13.41 15.67 5.56 0.09 -13.33 16 6 N -0.60 -12.76 2.86 -182.96 -0.52 -13.28 16 7 C 0.08 1.30 9.54 59.84 0.57 1.87 16 8 C 0.22 5.43 4.24 -5.19 -0.02 5.41 16 9 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 10 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 14 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 17 N -0.44 -6.64 5.25 -215.00 -1.13 -7.77 16 18 C 0.02 0.22 6.00 -2.64 -0.02 0.20 16 19 C -0.08 -0.92 1.30 -153.56 -0.20 -1.12 16 20 C -0.14 -1.18 8.36 37.16 0.31 -0.87 16 21 C -0.12 -1.28 7.91 37.16 0.29 -0.99 16 22 C 0.06 0.68 0.73 -130.55 -0.10 0.58 16 23 C -0.12 -1.31 8.21 37.16 0.30 -1.00 16 24 C -0.16 -1.55 6.45 37.16 0.24 -1.31 16 25 H 0.07 1.07 5.66 -51.93 -0.29 0.77 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.76 4.90 -51.93 -0.25 0.50 16 28 H 0.04 0.55 7.93 -51.93 -0.41 0.13 16 29 H 0.08 1.23 7.83 -51.93 -0.41 0.82 16 30 H 0.06 0.81 5.37 -51.93 -0.28 0.53 16 31 H 0.03 0.66 7.02 -51.93 -0.36 0.30 16 32 H 0.04 0.98 6.76 -51.93 -0.35 0.63 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.06 0.82 7.16 -51.93 -0.37 0.44 16 35 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.47 6.61 -51.93 -0.34 0.13 16 39 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 7.40 -51.93 -0.38 0.14 16 42 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 43 H 0.07 0.81 7.24 -51.93 -0.38 0.43 16 44 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.56 5.72 -51.93 -0.30 0.26 16 47 H 0.07 0.70 5.00 -51.93 -0.26 0.44 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -34.25 348.75 -7.09 -41.34 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.01 Total: -0.80 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 1.12 Total: -1.46 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.88 Total: -48.29 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.25 -7.09 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319107630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.415 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds