Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46743 * 2 1 4 4 C 1.50698 * 109.46867 * 120.00043 * 2 1 3 5 5 O 1.21281 * 119.99914 * 120.00141 * 4 2 1 6 6 N 1.34775 * 120.00161 * 299.99574 * 4 2 1 7 7 C 1.46502 * 120.00106 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00138 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46969 * 90.00259 * 8 6 4 10 10 H 1.07993 * 119.99877 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99907 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00111 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99714 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47134 * 60.00468 * 13 11 9 15 15 H 1.48505 * 109.46781 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47449 * 299.99512 * 13 11 9 17 17 N 1.46905 * 109.46940 * 239.99889 * 2 1 3 18 18 C 1.47481 * 110.99869 * 63.75764 * 17 2 1 19 19 C 1.53509 * 88.00001 * 138.67093 * 18 17 2 20 20 C 1.53001 * 114.16895 * 87.64489 * 19 18 17 21 21 C 1.53000 * 114.17173 * 220.36006 * 19 18 17 22 22 C 1.47481 * 110.99467 * 159.72334 * 17 2 1 23 23 C 1.52993 * 113.48294 * 336.06672 * 22 17 2 24 24 C 1.53009 * 113.47204 * 106.47328 * 22 17 2 25 25 H 1.08996 * 109.47205 * 187.19013 * 1 2 3 26 26 H 1.08997 * 109.46848 * 307.19573 * 1 2 3 27 27 H 1.09001 * 109.46939 * 67.19198 * 1 2 3 28 28 H 1.09004 * 109.46979 * 89.99374 * 7 6 4 29 29 H 1.08993 * 109.47473 * 209.99925 * 7 6 4 30 30 H 1.09007 * 109.46795 * 329.99415 * 7 6 4 31 31 H 1.08999 * 109.47135 * 210.00462 * 8 6 4 32 32 H 1.09006 * 109.47146 * 330.00182 * 8 6 4 33 33 H 0.96996 * 120.00184 * 179.97438 * 12 11 9 34 34 H 1.08998 * 113.47371 * 253.47107 * 18 17 2 35 35 H 1.08996 * 113.47836 * 23.86950 * 18 17 2 36 36 H 1.09008 * 109.46509 * 79.51367 * 20 19 18 37 37 H 1.08999 * 109.47132 * 199.50282 * 20 19 18 38 38 H 1.08990 * 109.47477 * 319.51031 * 20 19 18 39 39 H 1.08992 * 109.47214 * 40.49247 * 21 19 18 40 40 H 1.09002 * 109.46723 * 160.49244 * 21 19 18 41 41 H 1.09001 * 109.46811 * 280.49252 * 21 19 18 42 42 H 1.08996 * 109.47257 * 65.99436 * 23 22 17 43 43 H 1.08994 * 109.47497 * 185.99918 * 23 22 17 44 44 H 1.09009 * 109.46854 * 305.99678 * 23 22 17 45 45 H 1.08998 * 109.46750 * 40.49508 * 24 22 17 46 46 H 1.09000 * 109.46882 * 160.49159 * 24 22 17 47 47 H 1.09002 * 109.46820 * 280.49404 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 0.8641 0.9409 2.5890 8 6 2.1955 -0.9402 3.6507 9 6 3.5229 -0.3562 4.0606 10 1 3.9590 0.4484 3.4872 11 6 4.1811 -0.8497 5.1671 12 7 3.6502 -1.8299 5.8651 13 14 5.8267 -0.1262 5.6747 14 1 5.6616 1.3196 5.9708 15 1 6.3221 -0.8259 6.8873 16 1 6.8044 -0.2969 4.5701 17 7 2.0197 -0.6925 -1.1995 18 6 1.6218 0.0263 -2.4242 19 6 3.0236 -0.2577 -2.9818 20 6 3.1478 -1.5962 -3.7124 21 6 3.6416 0.9128 -3.7491 22 6 3.4135 -0.3132 -1.4967 23 6 3.8110 1.0475 -0.9210 24 6 4.4270 -1.4122 -1.1709 25 1 -0.3633 -1.0195 0.1286 26 1 -0.3633 0.6213 0.8186 27 1 -0.3633 0.3984 -0.9473 28 1 -0.1838 0.6427 2.6225 29 1 1.1219 1.4665 3.5084 30 1 1.0274 1.5997 1.7360 31 1 1.4776 -0.8151 4.4613 32 1 2.3170 -2.0015 3.4336 33 1 4.1134 -2.1773 6.6433 34 1 0.8252 -0.4692 -2.9791 35 1 1.4258 1.0861 -2.2614 36 1 2.7428 -1.4991 -4.7198 37 1 4.1979 -1.8831 -3.7692 38 1 2.5914 -2.3598 -3.1691 39 1 3.4189 1.8453 -3.2306 40 1 4.7218 0.7788 -3.8080 41 1 3.2244 0.9482 -4.7555 42 1 3.8043 0.9973 0.1678 43 1 4.8108 1.3102 -1.2665 44 1 3.1009 1.8044 -1.2542 45 1 4.0217 -2.3796 -1.4675 46 1 5.3534 -1.2246 -1.7137 47 1 4.6277 -1.4153 -0.0995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319107631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = 7.005004 kcal Electronic energy + Delta-G solvation = -24559.477025 eV Core-core repulsion = 21357.946670 eV Total energy + Delta-G solvation = -3201.530355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48492 -38.63241 -34.73686 -34.05761 -32.51632 -31.26511 -30.06654 -28.61566 -27.54428 -26.20030 -25.93647 -25.07258 -23.30085 -22.26256 -20.92333 -18.21260 -17.10038 -16.56360 -16.32450 -15.96263 -15.55399 -15.07671 -14.78157 -14.44468 -13.83337 -13.70954 -13.49467 -12.89148 -12.85403 -12.54708 -12.33070 -12.25579 -12.15707 -12.05710 -11.98545 -11.77011 -11.72689 -11.43661 -11.38569 -11.27155 -11.08922 -11.00712 -10.86913 -10.70702 -10.52979 -10.17464 -10.07124 -9.68083 -9.59891 -8.78768 -8.41194 -8.39490 -7.54916 -6.01769 -4.06559 3.32017 3.36684 3.38926 3.55513 3.80666 4.23703 4.29976 4.46718 4.69008 4.98278 5.08565 5.12685 5.23201 5.26386 5.31171 5.34115 5.38944 5.49711 5.57420 5.65267 5.68317 5.71689 5.80450 5.83464 5.86594 5.90009 5.94788 5.99691 6.04184 6.08580 6.16798 6.22432 6.22842 6.32108 6.37463 6.51466 6.60636 6.97782 7.08484 7.30026 7.49909 7.61952 7.95253 8.26850 8.51136 8.93825 9.23212 9.58658 11.06125 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.005265 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.431465 B = 5317.175508 C = 5930.095947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.019 3.981 3 H 0.074 0.926 4 C 0.513 3.487 5 O -0.517 6.517 6 N -0.605 5.605 7 C 0.083 3.917 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.432 5.432 18 C 0.003 3.997 19 C -0.087 4.087 20 C -0.118 4.118 21 C -0.135 4.135 22 C 0.069 3.931 23 C -0.158 4.158 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 7.511 -17.274 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.298 3.702 5 O -0.392 6.392 6 N -0.339 5.339 7 C -0.061 4.061 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.155 5.155 18 C -0.126 4.126 19 C -0.088 4.088 20 C -0.175 4.175 21 C -0.192 4.192 22 C -0.021 4.021 23 C -0.216 4.216 24 C -0.178 4.178 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.637 6.138 -16.987 18.648 hybrid contribution 0.977 1.455 0.532 1.831 sum -3.660 7.593 -16.455 18.489 Atomic orbital electron populations 1.21982 0.92962 1.03419 1.02342 1.22304 0.96924 0.97610 0.92467 0.90803 1.19954 0.81204 0.85286 0.83737 1.90647 1.36806 1.25919 1.85875 1.48109 1.50157 1.28323 1.07315 1.21747 0.93891 0.88314 1.02131 1.19235 0.94008 0.93708 0.80170 1.21378 1.04890 1.18932 1.11098 0.92727 1.24923 0.97833 0.94970 0.96301 1.69923 1.39012 1.26048 1.18393 0.86595 0.84079 0.79019 0.77931 1.20316 1.21160 1.20223 1.69056 1.04359 1.42904 0.99174 1.23890 0.97665 0.97698 0.93323 1.22096 0.95732 0.96513 0.94443 1.21452 1.01968 0.95327 0.98784 1.21709 1.00816 0.97110 0.99590 1.22657 0.91417 0.94883 0.93192 1.22087 1.01700 0.95801 1.02003 1.21566 0.95791 0.97555 1.02933 0.91656 0.90771 0.92301 0.93618 0.91011 0.92728 0.95214 0.93898 0.92700 0.89999 0.91777 0.93047 0.92383 0.91252 0.92477 0.92341 0.92628 0.91411 0.91488 0.92598 0.91746 0.93687 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.83 37.16 0.33 -1.64 16 2 C 0.02 0.31 0.88 -68.86 -0.06 0.25 16 3 H 0.07 1.10 4.50 -51.93 -0.23 0.86 16 4 C 0.51 10.89 6.40 -10.99 -0.07 10.82 16 5 O -0.52 -13.12 13.42 5.56 0.07 -13.04 16 6 N -0.61 -13.04 2.86 -182.95 -0.52 -13.57 16 7 C 0.08 1.35 8.79 59.85 0.53 1.87 16 8 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 9 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 10 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 N -0.43 -6.67 5.30 -221.82 -1.18 -7.85 16 18 C 0.00 0.04 5.22 -7.55 -0.04 0.00 16 19 C -0.09 -1.00 1.39 -153.91 -0.21 -1.22 16 20 C -0.12 -1.31 7.92 37.16 0.29 -1.01 16 21 C -0.13 -1.27 8.56 37.16 0.32 -0.95 16 22 C 0.07 1.00 0.91 -135.26 -0.12 0.88 16 23 C -0.16 -2.18 6.23 37.15 0.23 -1.95 16 24 C -0.12 -2.01 7.52 37.16 0.28 -1.73 16 25 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.07 0.88 4.76 -51.93 -0.25 0.63 16 27 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 28 H 0.05 0.64 7.11 -51.93 -0.37 0.27 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.05 0.74 5.92 -51.93 -0.31 0.43 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 0.91 8.12 -51.93 -0.42 0.48 16 35 H 0.06 0.69 6.89 -51.93 -0.36 0.33 16 36 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.06 0.63 7.75 -51.93 -0.40 0.22 16 38 H 0.07 0.88 7.66 -51.93 -0.40 0.49 16 39 H 0.06 0.52 6.48 -51.93 -0.34 0.18 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.14 6.77 -51.93 -0.35 0.79 16 43 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.06 0.66 5.50 -51.92 -0.29 0.37 16 45 H 0.06 1.10 7.14 -51.93 -0.37 0.73 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.48 6.70 -51.93 -0.35 1.13 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -32.54 349.21 -7.72 -40.26 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.10 Total: -0.21 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 1.02 Total: -1.72 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.96 Total: -47.53 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.54 -7.72 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319107631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.263 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds