Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47164 * 2 1 4 4 C 1.46896 * 110.99907 * 160.62192 * 3 2 1 5 5 C 1.53001 * 109.47335 * 288.36479 * 4 3 2 6 6 C 1.46900 * 111.00139 * 284.58182 * 3 2 1 7 7 C 1.53356 * 109.41396 * 295.12466 * 6 3 2 8 8 C 1.53188 * 109.15101 * 178.67614 * 7 6 3 9 9 N 1.46928 * 108.89470 * 54.57408 * 8 7 6 10 10 C 1.34779 * 120.63050 * 126.34099 * 9 8 7 11 11 O 1.21285 * 119.99820 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99914 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.46654 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46839 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00080 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46804 * 89.99723 * 18 16 14 20 20 H 1.48493 * 109.47053 * 209.99816 * 18 16 14 21 21 H 1.48498 * 109.47416 * 330.00273 * 18 16 14 22 22 C 1.46932 * 118.73900 * 306.32646 * 9 8 7 23 23 C 1.53040 * 109.45956 * 175.00013 * 6 3 2 24 24 H 1.08998 * 109.47349 * 306.20143 * 1 2 3 25 25 H 1.09000 * 109.47423 * 66.19974 * 1 2 3 26 26 H 1.09007 * 109.47388 * 186.20610 * 1 2 3 27 27 H 1.08999 * 109.46827 * 240.00032 * 2 1 3 28 28 H 1.09003 * 109.46848 * 119.99962 * 2 1 3 29 29 H 1.08998 * 109.47331 * 48.36625 * 4 3 2 30 30 H 1.09005 * 109.47032 * 168.36384 * 4 3 2 31 31 H 1.09000 * 109.47162 * 180.60430 * 5 4 3 32 32 H 1.09001 * 109.46907 * 300.59970 * 5 4 3 33 33 H 1.08995 * 109.46995 * 60.60534 * 5 4 3 34 34 H 1.08993 * 109.46280 * 55.02323 * 6 3 2 35 35 H 1.08999 * 109.68388 * 58.70743 * 7 6 3 36 36 H 1.08999 * 109.47283 * 298.51255 * 7 6 3 37 37 H 1.09005 * 109.58486 * 294.72474 * 8 7 6 38 38 H 1.08997 * 109.59114 * 174.43666 * 8 7 6 39 39 H 1.09001 * 109.47105 * 299.99697 * 12 10 9 40 40 H 1.08994 * 109.47462 * 60.00284 * 12 10 9 41 41 H 1.08996 * 109.47339 * 299.99489 * 13 12 10 42 42 H 1.08999 * 109.47480 * 60.00206 * 13 12 10 43 43 H 0.97006 * 120.00005 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.58189 * 173.38984 * 22 9 8 45 45 H 1.08992 * 109.58347 * 293.67326 * 22 9 8 46 46 H 1.08996 * 109.49734 * 61.43560 * 23 6 3 47 47 H 1.08992 * 109.52512 * 301.34635 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4148 1.4500 0.4550 5 6 3.4744 1.1728 1.9585 6 6 1.8696 1.9964 -1.3272 7 6 2.7691 1.2641 -2.3305 8 6 2.5832 1.8849 -3.7185 9 7 2.8280 3.3309 -3.6297 10 6 3.7197 3.9278 -4.4451 11 8 4.3287 3.2705 -5.2625 12 6 3.9601 5.4119 -4.3413 13 6 5.0102 5.8317 -5.3718 14 6 5.2502 7.3160 -5.2685 15 1 4.7075 7.9013 -4.5408 16 6 6.1616 7.9267 -6.1034 17 7 6.8219 7.2140 -6.9898 18 14 6.4585 9.7666 -5.9758 19 1 7.5504 10.0254 -5.0032 20 1 6.8448 10.2991 -7.3071 21 1 5.2163 10.4377 -5.5156 22 6 2.0819 4.1140 -2.6351 23 6 2.2724 3.4712 -1.2576 24 1 -0.3634 0.6069 0.8292 25 1 -0.3634 0.4147 -0.9403 26 1 -0.3634 -1.0217 0.1111 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0054 0.7033 -0.0758 30 1 3.8172 2.4426 0.2524 31 1 4.5085 1.2316 2.2981 32 1 2.8753 1.9132 2.4885 33 1 3.0820 0.1761 2.1600 34 1 0.8308 1.9184 -1.6477 35 1 2.4979 0.2089 -2.3646 36 1 3.8105 1.3628 -2.0243 37 1 1.5649 1.7074 -4.0648 38 1 3.2900 1.4369 -4.4169 39 1 3.0291 5.9451 -4.5339 40 1 4.3165 5.6531 -3.3399 41 1 5.9413 5.2986 -5.1796 42 1 4.6535 5.5906 -6.3731 43 1 7.4629 7.6438 -7.5775 44 1 2.4598 5.1363 -2.6168 45 1 1.0233 4.1202 -2.8945 46 1 3.3185 3.5490 -0.9615 47 1 1.6482 3.9852 -0.5269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324258527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -45.865363 kcal Electronic energy + Delta-G solvation = -23110.556777 eV Core-core repulsion = 19906.733791 eV Total energy + Delta-G solvation = -3203.822986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.26146 -38.69929 -36.07562 -33.51448 -32.27965 -32.14343 -31.45811 -30.49335 -28.50942 -25.89005 -24.54537 -23.55334 -23.07402 -22.08848 -21.18428 -19.44215 -18.36562 -17.13631 -16.26130 -15.77539 -15.63406 -15.45397 -15.13482 -14.75713 -14.52893 -14.38185 -14.16212 -13.63180 -13.15769 -12.99318 -12.81085 -12.54755 -12.30380 -12.17500 -12.11286 -11.91975 -11.87499 -11.64335 -11.53662 -11.19108 -11.15461 -10.92520 -10.79866 -10.69500 -10.56849 -10.44642 -9.94765 -9.59499 -9.16092 -8.97327 -8.51082 -8.37773 -8.29695 -5.95064 -3.99469 3.22213 3.30488 3.33944 3.40205 3.42932 3.63212 4.47582 4.50009 4.63654 4.69218 4.86739 4.93534 4.99917 5.03194 5.17730 5.20539 5.22110 5.25611 5.34157 5.38575 5.39852 5.45489 5.53601 5.62269 5.72398 5.73482 5.75180 5.79673 5.80928 5.92777 5.98119 6.00632 6.05755 6.16222 6.22719 6.23636 6.75956 6.87883 6.89545 6.93441 7.75363 7.77788 7.87547 8.08376 8.39630 8.76563 9.09061 9.64009 11.15926 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003245 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.898265 B = 8627.113680 C = 9002.988524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.531 5.531 4 C 0.041 3.959 5 C -0.146 4.146 6 C 0.085 3.915 7 C -0.167 4.167 8 C 0.116 3.884 9 N -0.625 5.625 10 C 0.513 3.487 11 O -0.535 6.535 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.110 3.890 23 C -0.128 4.128 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -13.682 16.938 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 N -0.254 5.254 4 C -0.086 4.086 5 C -0.204 4.204 6 C -0.023 4.023 7 C -0.206 4.206 8 C -0.008 4.008 9 N -0.361 5.361 10 C 0.303 3.697 11 O -0.411 6.411 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.014 4.014 23 C -0.166 4.166 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.899 -13.752 16.681 25.175 hybrid contribution 0.670 0.446 -0.476 0.935 sum -12.230 -13.306 16.205 24.274 Atomic orbital electron populations 1.21749 0.94952 1.01279 1.02328 1.22184 0.96164 0.89303 1.00972 1.62333 1.20070 1.17746 1.25279 1.22180 0.88802 1.01841 0.95798 1.21786 1.01393 1.01703 0.95502 1.21793 0.99459 0.94071 0.86976 1.22658 1.01367 0.99991 0.96612 1.21354 1.01354 0.81433 0.96630 1.48314 1.42608 1.07790 1.37432 1.21593 0.77224 0.91651 0.79218 1.90653 1.47830 1.66469 1.36138 1.21876 1.02870 0.88669 1.03379 1.18904 0.92642 0.95435 0.93064 1.21221 1.23023 0.93262 1.18960 0.92611 1.25027 0.95942 0.98108 0.95326 1.70002 1.26144 1.35553 1.21165 0.86592 0.78485 0.85552 0.77329 1.20681 1.21233 1.19861 1.21688 0.96409 0.96207 0.87079 1.22029 1.02634 0.94724 0.97231 0.91884 0.92868 0.92631 0.94230 0.90942 0.94748 0.90150 0.92455 0.91923 0.92998 0.89739 0.91000 0.91309 0.92208 0.89205 0.90275 0.90313 0.95909 0.95861 0.92963 0.88741 0.91658 0.91151 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C 0.04 0.33 5.43 -3.83 -0.02 0.30 16 3 N -0.53 -4.72 4.38 -226.41 -0.99 -5.71 16 4 C 0.04 0.37 4.61 -3.83 -0.02 0.35 16 5 C -0.15 -1.12 9.96 37.16 0.37 -0.75 16 6 C 0.09 0.80 2.10 -67.51 -0.14 0.66 16 7 C -0.17 -1.77 4.74 -26.45 -0.13 -1.89 16 8 C 0.12 1.51 6.42 -3.71 -0.02 1.48 16 9 N -0.63 -9.32 2.97 -172.76 -0.51 -9.83 16 10 C 0.51 10.21 7.70 -10.98 -0.08 10.12 16 11 O -0.54 -12.95 15.39 5.55 0.09 -12.86 16 12 C -0.13 -2.65 3.99 -27.88 -0.11 -2.76 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 23 C -0.13 -1.26 5.17 -26.61 -0.14 -1.40 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.39 7.06 -51.93 -0.37 0.02 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.32 5.87 -51.93 -0.30 0.02 16 28 H 0.07 0.54 6.24 -51.93 -0.32 0.21 16 29 H 0.03 0.33 7.16 -51.93 -0.37 -0.05 16 30 H 0.08 0.78 5.71 -51.93 -0.30 0.48 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.37 6.54 -51.93 -0.34 0.04 16 34 H 0.08 0.78 6.84 -51.93 -0.36 0.42 16 35 H 0.07 0.68 6.21 -51.93 -0.32 0.36 16 36 H 0.07 0.83 6.84 -51.93 -0.36 0.48 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 39 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 40 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -33.21 354.56 -9.02 -42.23 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.18 Total: -2.84 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.48 Total: -6.15 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.77 Total: -42.45 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.21 -9.02 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324258527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.633 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds