Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47164 * 2 1 4 4 C 1.46896 * 110.99907 * 160.62192 * 3 2 1 5 5 C 1.53001 * 109.47335 * 288.36479 * 4 3 2 6 6 C 1.46900 * 111.00139 * 284.58182 * 3 2 1 7 7 C 1.53356 * 109.41396 * 295.12466 * 6 3 2 8 8 C 1.53188 * 109.15101 * 178.67614 * 7 6 3 9 9 N 1.46928 * 108.89470 * 54.57408 * 8 7 6 10 10 C 1.34779 * 120.63050 * 126.34099 * 9 8 7 11 11 O 1.21285 * 119.99820 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99914 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.46654 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46839 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00080 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46804 * 89.99723 * 18 16 14 20 20 H 1.48493 * 109.47053 * 209.99816 * 18 16 14 21 21 H 1.48498 * 109.47416 * 330.00273 * 18 16 14 22 22 C 1.46932 * 118.73900 * 306.32646 * 9 8 7 23 23 C 1.53040 * 109.45956 * 175.00013 * 6 3 2 24 24 H 1.08998 * 109.47349 * 306.20143 * 1 2 3 25 25 H 1.09000 * 109.47423 * 66.19974 * 1 2 3 26 26 H 1.09007 * 109.47388 * 186.20610 * 1 2 3 27 27 H 1.08999 * 109.46827 * 240.00032 * 2 1 3 28 28 H 1.09003 * 109.46848 * 119.99962 * 2 1 3 29 29 H 1.08998 * 109.47331 * 48.36625 * 4 3 2 30 30 H 1.09005 * 109.47032 * 168.36384 * 4 3 2 31 31 H 1.09000 * 109.47162 * 180.60430 * 5 4 3 32 32 H 1.09001 * 109.46907 * 300.59970 * 5 4 3 33 33 H 1.08995 * 109.46995 * 60.60534 * 5 4 3 34 34 H 1.08993 * 109.46280 * 55.02323 * 6 3 2 35 35 H 1.08999 * 109.68388 * 58.70743 * 7 6 3 36 36 H 1.08999 * 109.47283 * 298.51255 * 7 6 3 37 37 H 1.09005 * 109.58486 * 294.72474 * 8 7 6 38 38 H 1.08997 * 109.59114 * 174.43666 * 8 7 6 39 39 H 1.09001 * 109.47105 * 299.99697 * 12 10 9 40 40 H 1.08994 * 109.47462 * 60.00284 * 12 10 9 41 41 H 1.08996 * 109.47339 * 299.99489 * 13 12 10 42 42 H 1.08999 * 109.47480 * 60.00206 * 13 12 10 43 43 H 0.97006 * 120.00005 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.58189 * 173.38984 * 22 9 8 45 45 H 1.08992 * 109.58347 * 293.67326 * 22 9 8 46 46 H 1.08996 * 109.49734 * 61.43560 * 23 6 3 47 47 H 1.08992 * 109.52512 * 301.34635 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4148 1.4500 0.4550 5 6 3.4744 1.1728 1.9585 6 6 1.8696 1.9964 -1.3272 7 6 2.7691 1.2641 -2.3305 8 6 2.5832 1.8849 -3.7185 9 7 2.8280 3.3309 -3.6297 10 6 3.7197 3.9278 -4.4451 11 8 4.3287 3.2705 -5.2625 12 6 3.9601 5.4119 -4.3413 13 6 5.0102 5.8317 -5.3718 14 6 5.2502 7.3160 -5.2685 15 1 4.7075 7.9013 -4.5408 16 6 6.1616 7.9267 -6.1034 17 7 6.8219 7.2140 -6.9898 18 14 6.4585 9.7666 -5.9758 19 1 7.5504 10.0254 -5.0032 20 1 6.8448 10.2991 -7.3071 21 1 5.2163 10.4377 -5.5156 22 6 2.0819 4.1140 -2.6351 23 6 2.2724 3.4712 -1.2576 24 1 -0.3634 0.6069 0.8292 25 1 -0.3634 0.4147 -0.9403 26 1 -0.3634 -1.0217 0.1111 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0054 0.7033 -0.0758 30 1 3.8172 2.4426 0.2524 31 1 4.5085 1.2316 2.2981 32 1 2.8753 1.9132 2.4885 33 1 3.0820 0.1761 2.1600 34 1 0.8308 1.9184 -1.6477 35 1 2.4979 0.2089 -2.3646 36 1 3.8105 1.3628 -2.0243 37 1 1.5649 1.7074 -4.0648 38 1 3.2900 1.4369 -4.4169 39 1 3.0291 5.9451 -4.5339 40 1 4.3165 5.6531 -3.3399 41 1 5.9413 5.2986 -5.1796 42 1 4.6535 5.5906 -6.3731 43 1 7.4629 7.6438 -7.5775 44 1 2.4598 5.1363 -2.6168 45 1 1.0233 4.1202 -2.8945 46 1 3.3185 3.5490 -0.9615 47 1 1.6482 3.9852 -0.5269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324258527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = -67.513778 kcal Electronic energy + Delta-G solvation = -23111.495523 eV Core-core repulsion = 19906.733791 eV Total energy + Delta-G solvation = -3204.761732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39790 -39.86145 -37.22651 -35.61410 -33.55379 -32.85746 -32.73702 -31.87790 -29.34486 -27.76302 -25.54845 -24.69845 -23.88749 -23.28212 -22.54643 -20.50721 -19.55644 -18.83739 -17.78655 -16.84571 -16.78969 -16.68046 -16.41260 -16.28147 -15.50322 -15.34146 -15.18666 -14.77588 -14.49488 -14.22097 -14.09205 -13.75683 -13.44961 -13.34870 -13.17897 -12.94390 -12.82624 -12.76774 -12.56289 -12.47645 -12.37057 -12.30719 -12.02518 -11.93887 -11.73551 -11.52752 -11.36720 -11.30591 -11.23276 -10.66129 -10.57343 -9.67259 -9.18392 -8.18201 -6.32581 1.42181 1.45175 1.56172 1.66839 2.04684 2.43336 2.91516 3.14776 3.64355 3.74434 3.86532 4.04032 4.08493 4.11716 4.26291 4.31658 4.34854 4.42688 4.46997 4.50547 4.52393 4.62018 4.64788 4.68156 4.77950 4.82036 4.86731 4.93828 4.95477 5.05069 5.10720 5.13403 5.16162 5.20421 5.32801 5.38607 5.45392 5.48014 5.61084 5.64482 5.84334 6.16076 6.16821 6.21645 6.40136 6.85841 7.25443 7.37902 8.94667 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003245 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.898265 B = 8627.113680 C = 9002.988524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 N -0.529 5.529 4 C 0.041 3.959 5 C -0.141 4.141 6 C 0.090 3.910 7 C -0.155 4.155 8 C 0.113 3.887 9 N -0.612 5.612 10 C 0.509 3.491 11 O -0.593 6.593 12 C -0.115 4.115 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.253 1.253 22 C 0.103 3.897 23 C -0.121 4.121 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.101 0.899 41 H -0.021 1.021 42 H -0.019 1.019 43 H 0.263 0.737 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 -12.703 19.366 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 N -0.253 5.253 4 C -0.087 4.087 5 C -0.198 4.198 6 C -0.018 4.018 7 C -0.195 4.195 8 C -0.010 4.010 9 N -0.346 5.346 10 C 0.299 3.701 11 O -0.474 6.474 12 C -0.154 4.154 13 C 0.006 3.994 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.177 1.177 22 C -0.019 4.019 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.119 0.881 41 H -0.003 1.003 42 H -0.001 1.001 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.203 -12.784 19.179 27.611 hybrid contribution 1.333 0.046 -1.198 1.793 sum -13.870 -12.738 17.980 26.037 Atomic orbital electron populations 1.21713 0.94035 1.01964 1.02130 1.22253 0.96859 0.88586 1.01109 1.62385 1.19804 1.18513 1.24557 1.22182 0.88822 1.01080 0.96635 1.21737 1.01739 1.01958 0.94398 1.21769 0.99561 0.93619 0.86883 1.22571 1.00729 1.00893 0.95294 1.21506 1.01786 0.80048 0.97671 1.48286 1.40882 1.08939 1.36455 1.21417 0.77842 0.91304 0.79492 1.90633 1.50469 1.67350 1.38925 1.21629 1.01820 0.89797 1.02198 1.18684 0.92629 0.95173 0.92926 1.21709 1.23139 0.93864 1.19258 0.90463 1.26164 0.95536 1.04130 0.94706 1.70189 1.27077 1.38252 1.22385 0.85303 0.79195 0.78267 0.77376 1.19699 1.21222 1.17710 1.22027 0.97272 0.95864 0.86786 1.21975 1.02357 0.95106 0.96489 0.92173 0.92926 0.91550 0.94491 0.90454 0.95640 0.91015 0.92043 0.91999 0.92426 0.88501 0.89554 0.93208 0.89739 0.92183 0.87802 0.88055 1.00254 1.00092 0.92867 0.88566 0.88938 0.92407 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.87 16 2 C 0.04 0.52 5.43 86.30 0.47 0.99 16 3 N -0.53 -8.20 4.38 -870.22 -3.81 -12.01 16 4 C 0.04 0.67 4.61 86.30 0.40 1.07 16 5 C -0.14 -1.92 9.96 71.98 0.72 -1.21 16 6 C 0.09 1.47 2.10 45.05 0.09 1.57 16 7 C -0.16 -3.10 4.74 30.78 0.15 -2.96 16 8 C 0.11 2.87 6.42 86.36 0.55 3.42 16 9 N -0.61 -17.74 2.97 -818.88 -2.44 -20.17 16 10 C 0.51 20.73 7.70 87.66 0.67 21.41 16 11 O -0.59 -30.47 15.39 -3.04 -0.05 -30.51 16 12 C -0.11 -4.75 3.99 29.85 0.12 -4.63 16 13 C 0.04 2.48 4.26 29.85 0.13 2.61 16 14 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -60.33 13.29 21.45 0.28 -60.05 16 18 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 22 C 0.10 2.05 6.34 86.36 0.55 2.60 16 23 C -0.12 -2.06 5.17 30.67 0.16 -1.90 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.60 7.06 -2.39 -0.02 0.58 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.04 0.52 5.87 -2.39 -0.01 0.51 16 28 H 0.08 0.97 6.24 -2.39 -0.01 0.95 16 29 H 0.03 0.47 7.16 -2.39 -0.02 0.45 16 30 H 0.07 1.32 5.71 -2.38 -0.01 1.30 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.72 6.54 -2.39 -0.02 0.70 16 34 H 0.10 1.42 6.84 -2.39 -0.02 1.40 16 35 H 0.09 1.50 6.21 -2.39 -0.01 1.48 16 36 H 0.05 1.20 6.84 -2.39 -0.02 1.18 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.91 7.00 -2.39 -0.02 1.90 16 39 H 0.10 3.76 7.94 -2.39 -0.02 3.74 16 40 H 0.10 3.71 7.69 -2.39 -0.02 3.69 16 41 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 42 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 43 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 44 H 0.10 1.93 5.93 -2.38 -0.01 1.91 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.16 6.20 -2.39 -0.01 1.15 16 47 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.08 354.56 2.36 -73.72 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.93 Total: 11.32 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.41 Total: -8.83 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -5.96 Total: -92.23 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.08 2.36 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324258527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.204 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds