Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 C 1.53010 * 109.46986 * 119.99738 * 2 1 3 5 5 C 1.50697 * 109.47257 * 174.99660 * 4 2 1 6 6 O 1.21280 * 119.99705 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00174 * 179.97438 * 5 4 2 8 8 C 1.47077 * 120.88157 * 180.02562 * 7 5 4 9 9 C 1.53235 * 108.52002 * 128.84275 * 8 7 5 10 10 N 1.46893 * 109.34585 * 53.82969 * 9 8 7 11 11 C 1.46894 * 111.00662 * 172.74553 * 10 9 8 12 12 H 1.08994 * 109.47371 * 178.17047 * 11 10 9 13 13 C 1.53005 * 109.46714 * 58.17325 * 11 10 9 14 14 C 1.53001 * 109.47312 * 298.17558 * 11 10 9 15 15 C 1.50700 * 109.46663 * 295.62806 * 14 11 10 16 16 H 1.08001 * 120.00247 * 4.86125 * 15 14 11 17 17 C 1.37880 * 119.99407 * 184.86705 * 15 14 11 18 18 N 1.31513 * 120.00400 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99638 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47121 * 120.00126 * 19 17 15 22 22 H 1.48496 * 109.46957 * 239.99733 * 19 17 15 23 23 C 1.46910 * 111.26701 * 296.89824 * 10 9 8 24 24 C 1.47085 * 120.87811 * 0.02876 * 7 5 4 25 25 H 1.09006 * 109.47240 * 300.00607 * 1 2 3 26 26 H 1.08998 * 109.47432 * 59.99848 * 1 2 3 27 27 H 1.09000 * 109.47834 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47305 * 239.98961 * 2 1 3 29 29 H 1.09000 * 109.47332 * 59.99999 * 3 2 1 30 30 H 1.09000 * 109.46804 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47184 * 299.99609 * 3 2 1 32 32 H 1.09005 * 109.46898 * 54.99664 * 4 2 1 33 33 H 1.09004 * 109.47017 * 295.00335 * 4 2 1 34 34 H 1.08996 * 109.62947 * 9.12634 * 8 7 5 35 35 H 1.09001 * 109.62878 * 248.54991 * 8 7 5 36 36 H 1.09010 * 109.49338 * 173.79194 * 9 8 7 37 37 H 1.08997 * 109.49386 * 293.86581 * 9 8 7 38 38 H 1.09000 * 109.46710 * 180.02562 * 13 11 10 39 39 H 1.08994 * 109.46975 * 299.99965 * 13 11 10 40 40 H 1.08994 * 109.47276 * 60.00530 * 13 11 10 41 41 H 1.09000 * 109.47213 * 55.62277 * 14 11 10 42 42 H 1.08992 * 109.47505 * 175.62642 * 14 11 10 43 43 H 0.96998 * 120.00217 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.48435 * 303.14067 * 23 10 9 45 45 H 1.08994 * 109.51477 * 183.07578 * 23 10 9 46 46 H 1.08998 * 109.63074 * 350.86881 * 24 7 5 47 47 H 1.08997 * 109.62466 * 111.45127 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8295 1.1890 6 8 4.1449 -0.3742 0.2405 7 7 4.2148 -1.4313 2.1897 8 6 5.6805 -1.5472 2.1509 9 6 6.2453 -1.0238 3.4758 10 7 5.5962 -1.7242 4.5920 11 6 6.2292 -1.3766 5.8712 12 1 5.7088 -1.8834 6.6837 13 6 6.1538 0.1369 6.0828 14 6 7.6945 -1.8163 5.8512 15 6 7.7669 -3.3182 5.7504 16 1 6.8625 -3.8953 5.6261 17 6 8.9877 -3.9555 5.8170 18 7 10.0890 -3.2528 5.9681 19 14 9.0773 -5.8173 5.6928 20 1 7.7085 -6.3689 5.5286 21 1 9.9079 -6.1958 4.5214 22 1 9.6870 -6.3671 6.9302 23 6 4.1535 -1.4493 4.6267 24 6 3.5029 -1.9898 3.3493 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8898 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6052 -1.7198 1.2953 33 1 1.7515 -0.1583 2.1371 34 1 6.0730 -0.9535 1.3254 35 1 5.9619 -2.5921 2.0203 36 1 7.3200 -1.2034 3.5093 37 1 6.0523 0.0459 3.5561 38 1 6.6239 0.3948 7.0318 39 1 6.6742 0.6437 5.2703 40 1 5.1099 0.4501 6.0971 41 1 8.1962 -1.3700 4.9925 42 1 8.1845 -1.4897 6.7684 43 1 10.9479 -3.7012 6.0146 44 1 3.9897 -0.3736 4.6910 45 1 3.7107 -1.9372 5.4950 46 1 2.4559 -1.6886 3.3161 47 1 3.5747 -3.0773 3.3340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348442168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -44.463516 kcal Electronic energy + Delta-G solvation = -23487.433010 eV Core-core repulsion = 20283.670813 eV Total energy + Delta-G solvation = -3203.762198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24050 -38.39286 -35.84011 -35.17011 -32.74446 -31.13997 -30.81665 -28.32529 -27.38454 -27.23812 -26.01161 -23.59620 -23.06850 -21.62178 -20.44555 -19.26952 -18.32904 -17.04841 -16.22398 -16.04088 -15.51202 -15.17938 -14.81458 -14.64739 -14.38715 -14.10691 -13.90867 -13.55844 -13.14469 -13.01904 -12.47467 -12.35185 -12.22208 -12.14251 -11.95360 -11.78388 -11.69924 -11.36249 -11.24911 -11.09266 -10.98699 -10.84054 -10.79020 -10.63948 -10.50656 -10.40356 -9.94165 -9.56734 -9.23592 -9.00734 -8.52895 -8.29376 -7.56889 -5.92263 -3.90613 2.71092 3.08903 3.35983 3.43989 3.48609 4.39633 4.47982 4.53804 4.61099 4.74983 5.02331 5.12544 5.20866 5.31687 5.33452 5.41434 5.44614 5.45277 5.51853 5.54100 5.64182 5.69869 5.73471 5.80871 5.82243 5.88319 5.91149 5.98357 6.01175 6.03719 6.20409 6.27247 6.32564 6.35466 6.47296 6.60144 6.74318 6.90372 7.41901 7.56496 7.61267 7.82288 7.93668 8.08738 8.27432 8.53854 9.16654 9.71902 11.19616 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025819 B = 0.003824 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.212972 B = 7319.619276 C = 7649.878269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.610 5.610 8 C 0.116 3.884 9 C 0.043 3.957 10 N -0.510 5.510 11 C 0.087 3.913 12 H 0.072 0.928 13 C -0.184 4.184 14 C 0.028 3.972 15 C -0.492 4.492 16 H 0.063 0.937 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.037 3.963 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.257 0.743 44 H 0.030 0.970 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.998 6.382 -6.943 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.301 3.699 6 O -0.424 6.424 7 N -0.344 5.344 8 C -0.006 4.006 9 C -0.086 4.086 10 N -0.233 5.233 11 C -0.020 4.020 12 H 0.090 0.910 13 C -0.243 4.243 14 C -0.009 4.009 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.092 4.092 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.431 6.087 -7.500 19.929 hybrid contribution 0.071 -0.227 0.302 0.385 sum -17.361 5.860 -7.197 19.686 Atomic orbital electron populations 1.21863 0.95111 1.01639 1.01863 1.20862 0.94867 0.96932 0.97301 1.21953 1.03300 0.94966 1.00792 1.21796 0.92477 1.02700 1.00623 1.20667 0.90072 0.77274 0.81931 1.90638 1.70377 1.48130 1.33259 1.48282 1.08073 1.57235 1.20768 1.21789 0.78234 1.02416 0.98177 1.22489 1.01267 0.94873 0.89939 1.62066 1.00287 1.57179 1.03816 1.21939 0.99603 0.91108 0.89383 0.91001 1.22520 0.99913 0.99864 1.01957 1.19240 0.87589 0.96820 0.97243 1.21215 0.92603 0.91713 1.47530 0.91912 1.25022 0.96014 0.97892 0.95963 1.69968 0.97774 1.35038 1.51592 0.86580 0.77928 0.86398 0.77326 1.19776 1.21319 1.21416 1.22448 0.91198 0.98350 0.97222 1.21876 0.95243 0.99309 0.84711 0.92713 0.92491 0.92718 0.90493 0.93512 0.90613 0.93097 0.89090 0.89150 0.89324 0.90522 0.87911 0.95440 0.92446 0.93001 0.94211 0.96566 0.95912 0.93323 0.95162 0.89999 0.90108 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.15 0.34 -0.75 16 2 C -0.08 -0.79 2.57 -90.62 -0.23 -1.02 16 3 C -0.15 -1.61 8.93 37.16 0.33 -1.28 16 4 C -0.14 -1.33 3.54 -27.88 -0.10 -1.43 16 5 C 0.51 7.04 7.42 -10.99 -0.08 6.96 16 6 O -0.55 -9.23 13.42 5.56 0.07 -9.15 16 7 N -0.61 -8.51 3.01 -172.49 -0.52 -9.02 16 8 C 0.12 1.85 6.60 -3.61 -0.02 1.83 16 9 C 0.04 0.74 4.75 -3.71 -0.02 0.72 16 10 N -0.51 -8.96 4.29 -226.37 -0.97 -9.93 16 11 C 0.09 1.68 2.29 -67.71 -0.16 1.53 16 12 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 13 C -0.18 -3.04 8.50 37.16 0.32 -2.73 16 14 C 0.03 0.68 4.28 -27.88 -0.12 0.56 16 15 C -0.49 -13.31 8.83 -34.44 -0.30 -13.61 16 16 H 0.06 1.70 7.73 -52.49 -0.41 1.29 16 17 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 18 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.04 0.51 5.16 -3.72 -0.02 0.49 16 24 C 0.11 1.32 6.50 -3.62 -0.02 1.30 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 33 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 34 H 0.09 1.44 7.06 -51.93 -0.37 1.08 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 2.04 5.93 -51.92 -0.31 1.73 16 37 H 0.03 0.47 6.70 -51.93 -0.35 0.12 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 40 H 0.04 0.58 6.72 -51.93 -0.35 0.23 16 41 H 0.02 0.42 6.09 -51.93 -0.32 0.10 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.03 0.41 6.84 -51.93 -0.36 0.06 16 45 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 46 H 0.08 0.70 6.02 -51.93 -0.31 0.39 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -30.69 355.74 -8.93 -39.62 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.41 Total: -1.38 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.18 Total: -6.10 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.75 Total: -44.97 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.69 -8.93 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348442168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.842 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds