Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 C 1.52992 * 109.47107 * 120.00073 * 2 1 3 5 5 C 1.50707 * 109.46954 * 175.00070 * 4 2 1 6 6 O 1.21273 * 120.00126 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00061 * 179.97438 * 5 4 2 8 8 C 1.47076 * 120.88299 * 180.02562 * 7 5 4 9 9 C 1.53239 * 108.52375 * 231.20868 * 8 7 5 10 10 N 1.46898 * 109.33959 * 306.16938 * 9 8 7 11 11 C 1.46898 * 111.00329 * 187.25187 * 10 9 8 12 12 H 1.09003 * 109.47481 * 188.84140 * 11 10 9 13 13 C 1.52999 * 109.46880 * 308.84513 * 11 10 9 14 14 C 1.52996 * 109.46750 * 68.83929 * 11 10 9 15 15 C 1.50705 * 109.47234 * 63.52349 * 14 11 10 16 16 H 1.08001 * 119.99901 * 5.09004 * 15 14 11 17 17 C 1.37873 * 120.00255 * 185.08915 * 15 14 11 18 18 N 1.31514 * 119.99982 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00053 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47265 * 59.99753 * 19 17 15 21 21 H 1.48500 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46924 * 299.99592 * 19 17 15 23 23 C 1.46905 * 111.26876 * 63.10335 * 10 9 8 24 24 C 1.47079 * 120.87868 * 0.02562 * 7 5 4 25 25 H 1.09002 * 109.47104 * 299.99496 * 1 2 3 26 26 H 1.08998 * 109.47549 * 59.99762 * 1 2 3 27 27 H 1.09006 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47104 * 240.00504 * 2 1 3 29 29 H 1.09007 * 109.47091 * 59.99964 * 3 2 1 30 30 H 1.08993 * 109.47294 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47190 * 300.00458 * 3 2 1 32 32 H 1.08997 * 109.47334 * 55.00373 * 4 2 1 33 33 H 1.09004 * 109.47373 * 294.99686 * 4 2 1 34 34 H 1.08994 * 109.62938 * 111.49710 * 8 7 5 35 35 H 1.09000 * 109.62910 * 350.91668 * 8 7 5 36 36 H 1.08996 * 109.49388 * 186.21060 * 9 8 7 37 37 H 1.08999 * 109.51188 * 66.14052 * 9 8 7 38 38 H 1.09000 * 109.47084 * 299.99145 * 13 11 10 39 39 H 1.09003 * 109.46945 * 179.97438 * 13 11 10 40 40 H 1.09003 * 109.47368 * 59.99558 * 13 11 10 41 41 H 1.09002 * 109.47315 * 183.51866 * 14 11 10 42 42 H 1.08993 * 109.47907 * 303.52253 * 14 11 10 43 43 H 0.96998 * 120.00139 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.49424 * 56.85624 * 23 10 9 45 45 H 1.09004 * 109.49081 * 176.93840 * 23 10 9 46 46 H 1.09008 * 109.62719 * 248.50028 * 24 7 5 47 47 H 1.09000 * 109.63229 * 8.88323 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1888 6 8 4.1451 -0.3739 0.2403 7 7 4.2151 -1.4312 2.1894 8 6 5.6808 -1.5470 2.1507 9 6 6.0605 -3.0098 2.4042 10 7 5.4342 -3.4656 3.6523 11 6 5.9099 -4.8056 4.0213 12 1 5.3197 -5.1837 4.8561 13 6 5.7618 -5.7468 2.8243 14 6 7.3821 -4.7291 4.4309 15 6 7.5170 -3.8709 5.6623 16 1 6.6342 -3.4923 6.1560 17 6 8.7674 -3.5691 6.1587 18 7 9.8424 -4.0306 5.5578 19 14 8.9346 -2.5059 7.6855 20 1 8.2456 -3.1637 8.8246 21 1 10.3727 -2.3299 8.0110 22 1 8.3184 -1.1783 7.4340 23 6 3.9687 -3.4356 3.5551 24 6 3.5033 -1.9897 3.3490 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6055 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1370 34 1 6.1184 -0.9158 2.9240 35 1 6.0467 -1.2382 1.1715 36 1 7.1438 -3.0950 2.4886 37 1 5.7106 -3.6256 1.5757 38 1 4.7130 -5.8013 2.5325 39 1 6.1152 -6.7410 3.0979 40 1 6.3521 -5.3687 1.9895 41 1 7.7523 -5.7318 4.6446 42 1 7.9631 -4.2928 3.6185 43 1 10.7221 -3.8180 5.9067 44 1 3.6476 -4.0452 2.7105 45 1 3.5350 -3.8296 4.4743 46 1 3.7321 -1.4010 4.2374 47 1 2.4294 -1.9704 3.1636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348442169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = -44.860177 kcal Electronic energy + Delta-G solvation = -23469.415691 eV Core-core repulsion = 20265.636293 eV Total energy + Delta-G solvation = -3203.779398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23232 -38.37549 -35.83272 -35.16372 -32.73620 -31.11761 -30.83751 -28.32230 -27.35209 -27.23279 -26.02089 -23.54333 -23.13248 -21.57483 -20.45346 -19.27071 -18.32019 -17.05311 -16.22707 -15.98213 -15.64684 -15.21834 -14.68405 -14.61369 -14.20283 -14.14616 -13.90537 -13.75570 -13.13592 -12.96294 -12.46079 -12.33949 -12.20904 -12.09762 -11.94329 -11.77452 -11.69132 -11.38012 -11.21064 -11.12233 -10.95668 -10.83120 -10.79541 -10.62203 -10.54870 -10.40358 -9.99726 -9.57118 -9.24338 -9.01494 -8.51712 -8.27458 -7.54624 -5.90318 -3.88348 2.71572 3.09389 3.39301 3.43762 3.46492 4.39484 4.48469 4.54825 4.61599 4.75440 5.03139 5.12904 5.22028 5.31191 5.34626 5.41968 5.45041 5.46970 5.52830 5.54394 5.63612 5.68218 5.73919 5.81045 5.83685 5.88623 5.90426 5.98785 6.01603 6.03599 6.20789 6.26294 6.31408 6.36404 6.45795 6.59077 6.72718 6.93291 7.42014 7.56792 7.60615 7.83241 7.95691 8.09582 8.27820 8.54744 9.16377 9.73216 11.21609 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.003912 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.009798 B = 7156.444145 C = 7592.991340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.610 5.610 8 C 0.116 3.884 9 C 0.045 3.955 10 N -0.508 5.508 11 C 0.087 3.913 12 H 0.069 0.931 13 C -0.183 4.183 14 C 0.031 3.969 15 C -0.490 4.490 16 H 0.058 0.942 17 C 0.051 3.949 18 N -0.904 5.904 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.038 3.962 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.022 0.978 43 H 0.258 0.742 44 H 0.029 0.971 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 4.687 -8.196 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.301 3.699 6 O -0.424 6.424 7 N -0.343 5.343 8 C -0.006 4.006 9 C -0.084 4.084 10 N -0.231 5.231 11 C -0.020 4.020 12 H 0.088 0.912 13 C -0.242 4.242 14 C -0.006 4.006 15 C -0.528 4.528 16 H 0.076 0.924 17 C -0.148 4.148 18 N -0.544 5.544 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.091 4.091 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.928 5.259 -8.300 19.573 hybrid contribution -0.056 -0.109 0.391 0.409 sum -16.984 5.150 -7.909 19.431 Atomic orbital electron populations 1.21865 0.95115 1.01622 1.01875 1.20861 0.94865 0.96959 0.97281 1.21955 1.03316 0.94932 1.00810 1.21793 0.92465 1.02614 1.00717 1.20669 0.90059 0.77440 0.81769 1.90634 1.70396 1.48142 1.33260 1.48274 1.08055 1.57158 1.20844 1.21783 0.78667 0.97346 1.02834 1.22455 1.01611 0.93823 0.90478 1.62060 1.03124 1.26798 1.31164 1.21934 1.00879 0.84661 0.94545 0.91240 1.22520 0.99774 1.01207 1.00682 1.19183 0.87629 0.96872 0.96955 1.21076 0.91869 1.29857 1.10013 0.92353 1.24991 0.96148 0.96460 0.97206 1.69946 0.97666 1.46232 1.40598 0.86699 0.76576 0.81165 0.83720 1.20547 1.21675 1.20395 1.22459 0.90976 0.95028 1.00640 1.21893 0.95722 0.94812 0.88720 0.92671 0.92498 0.92756 0.90553 0.93450 0.90586 0.93122 0.89177 0.89052 0.90485 0.89333 0.88351 0.95348 0.94346 0.92478 0.92794 0.96656 0.95964 0.93231 0.95321 0.89957 0.90362 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.08 -0.79 2.57 -90.62 -0.23 -1.02 16 3 C -0.15 -1.61 8.93 37.16 0.33 -1.27 16 4 C -0.14 -1.34 3.54 -27.88 -0.10 -1.44 16 5 C 0.51 7.08 7.42 -10.98 -0.08 7.00 16 6 O -0.55 -9.26 13.42 5.56 0.07 -9.18 16 7 N -0.61 -8.58 3.01 -172.44 -0.52 -9.10 16 8 C 0.12 1.86 6.60 -3.60 -0.02 1.84 16 9 C 0.04 0.78 4.57 -3.70 -0.02 0.76 16 10 N -0.51 -9.01 4.23 -226.32 -0.96 -9.96 16 11 C 0.09 1.69 2.26 -67.72 -0.15 1.53 16 12 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 13 C -0.18 -3.03 8.40 37.16 0.31 -2.72 16 14 C 0.03 0.75 4.40 -27.88 -0.12 0.63 16 15 C -0.49 -13.28 8.80 -34.44 -0.30 -13.59 16 16 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 17 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.04 0.53 5.31 -3.67 -0.02 0.51 16 24 C 0.11 1.34 6.51 -3.58 -0.02 1.32 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 29 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 33 H 0.09 0.77 8.00 -51.93 -0.42 0.35 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.44 7.06 -51.93 -0.37 1.08 16 36 H 0.10 1.93 6.25 -51.93 -0.32 1.61 16 37 H 0.03 0.48 6.67 -51.93 -0.35 0.13 16 38 H 0.04 0.56 6.97 -51.93 -0.36 0.20 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.91 6.48 -51.93 -0.34 0.57 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.58 6.38 -51.93 -0.33 0.25 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.03 0.39 7.06 -51.93 -0.37 0.03 16 45 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 46 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -30.77 356.41 -8.95 -39.72 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -8.45 Total: -1.58 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.19 Total: -5.86 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.74 Total: -45.16 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.77 -8.95 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348442169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.136 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds