Wall clock time and date at job start Tue Mar 31 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.50714 * 2 1 4 4 C 1.53099 * 109.54127 * 120.10940 * 2 1 3 5 5 O 1.43011 * 109.25456 * 176.80512 * 4 2 1 6 6 C 1.43006 * 113.74199 * 301.32755 * 5 4 2 7 7 C 1.53095 * 109.25974 * 58.67088 * 6 5 4 8 8 N 1.47014 * 109.26008 * 303.15468 * 7 6 5 9 9 C 1.46898 * 111.00295 * 182.38777 * 8 7 6 10 10 C 1.53003 * 109.46867 * 46.36832 * 9 8 7 11 11 N 1.46898 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.46842 * 110.99916 * 294.20493 * 11 10 9 13 13 C 1.53044 * 109.52547 * 174.16275 * 12 11 10 14 14 C 1.53124 * 109.27546 * 59.17874 * 13 12 11 15 15 C 1.53121 * 109.16046 * 302.34820 * 14 13 12 16 16 H 1.09001 * 109.50597 * 297.71070 * 15 14 13 17 17 C 1.50703 * 109.50154 * 177.63521 * 15 14 13 18 18 H 1.08002 * 120.00156 * 275.20401 * 17 15 14 19 19 C 1.37876 * 120.00200 * 95.19911 * 17 15 14 20 20 N 1.31512 * 120.00442 * 185.51537 * 19 17 15 21 21 Si 1.86801 * 119.99612 * 5.51751 * 19 17 15 22 22 H 1.48505 * 109.47182 * 84.78223 * 21 19 17 23 23 H 1.48504 * 109.46993 * 204.78145 * 21 19 17 24 24 H 1.48506 * 109.47365 * 324.78044 * 21 19 17 25 25 C 1.46852 * 110.99802 * 170.00027 * 11 10 9 26 26 H 1.09006 * 109.46932 * 180.09088 * 1 2 3 27 27 H 1.08998 * 109.47283 * 300.08674 * 1 2 3 28 28 H 1.08995 * 109.47098 * 60.09270 * 1 2 3 29 29 H 1.09003 * 109.50338 * 296.73995 * 4 2 1 30 30 H 1.08996 * 109.51042 * 56.82381 * 4 2 1 31 31 H 1.08996 * 109.51081 * 178.60819 * 6 5 4 32 32 H 1.09004 * 109.50479 * 298.69244 * 6 5 4 33 33 H 1.09000 * 109.51035 * 183.21992 * 7 6 5 34 34 H 1.09004 * 109.50495 * 63.08448 * 7 6 5 35 35 H 1.08994 * 109.47251 * 286.36377 * 9 8 7 36 36 H 1.08999 * 109.46945 * 166.36200 * 9 8 7 37 37 H 1.08994 * 109.47556 * 59.99733 * 10 9 8 38 38 H 1.09001 * 109.46808 * 299.99985 * 10 9 8 39 39 H 1.08998 * 109.46245 * 54.14890 * 12 11 10 40 40 H 1.09000 * 109.46480 * 294.17871 * 12 11 10 41 41 H 1.09000 * 109.49787 * 299.24245 * 13 12 11 42 42 H 1.08991 * 109.50491 * 179.11770 * 13 12 11 43 43 H 1.08997 * 109.52256 * 62.25428 * 14 13 12 44 44 H 1.08998 * 109.52235 * 182.37892 * 14 13 12 45 45 H 0.96997 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.46516 * 65.82151 * 25 11 10 47 47 H 1.08998 * 109.45150 * 305.84405 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0422 -0.7238 1.2481 5 8 3.4703 -0.7856 1.2048 6 6 3.9828 -1.4563 0.0504 7 6 3.4904 -0.7400 -1.2099 8 7 2.0210 -0.6947 -1.1991 9 6 1.5046 -0.0641 -2.4212 10 6 2.2245 -0.6469 -3.6390 11 7 1.7078 -0.0168 -4.8612 12 6 0.2991 -0.3693 -5.0798 13 6 -0.2453 0.4167 -6.2749 14 6 0.5828 0.0830 -7.5189 15 6 2.0529 0.4142 -7.2478 16 1 2.1562 1.4824 -7.0571 17 6 2.8835 0.0345 -8.4466 18 1 3.2372 -0.9797 -8.5592 19 6 3.1918 0.9819 -9.3997 20 7 3.8229 0.6285 -10.4981 21 14 2.7132 2.7674 -9.1308 22 1 3.7577 3.4431 -8.3197 23 1 2.5878 3.4494 -10.4440 24 1 1.4135 2.8291 -8.4149 25 6 2.5306 -0.3718 -6.0246 26 1 -0.3633 -1.0277 0.0016 27 1 -0.3634 0.5152 0.8892 28 1 -0.3633 0.5124 -0.8908 29 1 1.7282 -0.1796 2.1389 30 1 1.6341 -1.7341 1.2762 31 1 5.0724 -1.4420 0.0749 32 1 3.6324 -2.4884 0.0436 33 1 3.8313 -1.2808 -2.0927 34 1 3.8856 0.2757 -1.2292 35 1 1.6782 1.0110 -2.3766 36 1 0.4350 -0.2563 -2.5052 37 1 2.0509 -1.7221 -3.6837 38 1 3.2942 -0.4548 -3.5550 39 1 -0.2792 -0.1230 -4.1894 40 1 0.2190 -1.4376 -5.2808 41 1 -0.1782 1.4849 -6.0688 42 1 -1.2863 0.1432 -6.4465 43 1 0.4846 -0.9781 -7.7479 44 1 0.2253 0.6724 -8.3633 45 1 4.0401 1.2951 -11.1684 46 1 2.4400 -1.4400 -6.2212 47 1 3.5729 -0.1272 -5.8202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460412894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:37 Heat of formation + Delta-G solvation = -42.839776 kcal Electronic energy + Delta-G solvation = -23374.516307 eV Core-core repulsion = 20170.824520 eV Total energy + Delta-G solvation = -3203.691787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06981 -38.46552 -36.33621 -33.92831 -32.85352 -32.00382 -30.32932 -29.38706 -27.40697 -26.21337 -25.04585 -23.05167 -22.98877 -21.73561 -20.63206 -19.98454 -18.77973 -17.00617 -16.64143 -16.48353 -15.73900 -15.45030 -15.27689 -14.72996 -14.47007 -14.30042 -13.97326 -13.68948 -13.19023 -13.14769 -12.76517 -12.52212 -12.49993 -12.38687 -12.17494 -11.94001 -11.89825 -11.40281 -11.27854 -11.14578 -10.99095 -10.76370 -10.63048 -10.54609 -10.19585 -9.81315 -9.79666 -9.53608 -9.28227 -8.93803 -8.52266 -8.49014 -7.82720 -6.07460 -4.06772 3.31806 3.39550 3.43828 3.47857 3.65349 4.39552 4.44366 4.55263 4.71372 4.74925 4.89497 5.01604 5.05887 5.21840 5.23266 5.26424 5.31421 5.39828 5.45383 5.50632 5.56867 5.61612 5.65477 5.67994 5.73281 5.86180 5.91906 5.97072 6.02160 6.07677 6.19055 6.32397 6.40744 6.50945 6.67538 6.77917 6.81486 6.83649 6.91972 6.93554 7.30609 7.46619 7.58186 7.62587 7.87183 8.53342 8.97361 9.56501 11.05817 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.003660 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.227533 B = 7648.244596 C = 8089.645281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 H 0.049 0.951 4 C 0.070 3.930 5 O -0.388 6.388 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.533 5.533 9 C 0.058 3.942 10 C 0.053 3.947 11 N -0.543 5.543 12 C 0.061 3.939 13 C -0.121 4.121 14 C -0.112 4.112 15 C 0.021 3.979 16 H 0.039 0.961 17 C -0.513 4.513 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.902 5.902 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.074 3.926 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.024 0.976 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 -2.277 21.749 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.067 0.933 4 C -0.007 4.007 5 O -0.306 6.306 6 C -0.013 4.013 7 C -0.117 4.117 8 N -0.259 5.259 9 C -0.069 4.069 10 C -0.075 4.075 11 N -0.268 5.268 12 C -0.067 4.067 13 C -0.158 4.158 14 C -0.150 4.150 15 C 0.001 3.999 16 H 0.057 0.943 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.188 1.188 25 C -0.053 4.053 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.782 -2.113 21.784 22.637 hybrid contribution -0.101 0.814 -0.462 0.942 sum -5.882 -1.298 21.322 22.156 Atomic orbital electron populations 1.21806 0.93495 1.02787 1.02227 1.22317 0.96410 0.96499 0.91193 0.93270 1.22704 0.80963 1.00274 0.96806 1.87969 1.20665 1.78573 1.43391 1.22697 0.98944 0.95639 0.84067 1.22901 0.88394 1.00677 0.99753 1.62321 1.08249 1.53321 1.02031 1.22177 0.99932 0.96888 0.87923 1.22152 0.99126 0.96555 0.89713 1.62012 1.02659 1.58984 1.03166 1.22041 0.89309 0.97287 0.98047 1.21688 0.98140 1.00176 0.95842 1.21864 0.97570 1.00390 0.95208 1.19150 0.92071 0.96104 0.92533 0.94318 1.20964 1.32095 0.98102 1.03950 0.91134 1.25047 0.94407 0.98790 0.94709 1.69912 1.41298 1.34314 1.08431 0.86831 0.79906 0.85455 0.77175 1.20213 1.21801 1.18780 1.22251 0.96015 0.97686 0.89322 0.91622 0.92014 0.91896 0.88684 0.92303 0.88446 0.92300 0.88803 0.93733 0.93877 0.90243 0.94534 0.90898 0.91986 0.95463 0.92083 0.92938 0.93231 0.92977 0.92679 0.95758 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.90 37.16 0.33 -0.87 16 2 C 0.04 0.44 2.55 -67.59 -0.17 0.27 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.07 0.64 6.29 37.21 0.23 0.87 16 5 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 6 C 0.06 0.61 7.01 37.21 0.26 0.87 16 7 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 8 N -0.53 -5.99 4.69 -226.34 -1.06 -7.05 16 9 C 0.06 0.72 4.41 -3.82 -0.02 0.71 16 10 C 0.05 0.76 4.23 -3.82 -0.02 0.74 16 11 N -0.54 -9.35 4.66 -234.67 -1.09 -10.44 16 12 C 0.06 0.97 5.29 -3.83 -0.02 0.95 16 13 C -0.12 -2.08 6.09 -26.64 -0.16 -2.24 16 14 C -0.11 -2.36 5.27 -26.60 -0.14 -2.50 16 15 C 0.02 0.48 1.94 -91.69 -0.18 0.31 16 16 H 0.04 0.94 5.26 -51.93 -0.27 0.67 16 17 C -0.51 -14.24 8.86 -34.44 -0.31 -14.54 16 18 H 0.07 2.13 8.06 -52.49 -0.42 1.70 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 21 Si 0.88 21.73 27.01 -169.99 -4.59 17.14 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.26 6.80 56.52 0.38 -5.88 16 25 C 0.07 1.51 4.73 -3.83 -0.02 1.49 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.56 6.60 -51.93 -0.34 0.22 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.99 6.05 -51.93 -0.31 0.68 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.08 0.96 5.15 -51.93 -0.27 0.70 16 37 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.07 1.03 6.12 -51.93 -0.32 0.71 16 39 H 0.06 0.85 6.21 -51.93 -0.32 0.53 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 1.36 8.02 -51.93 -0.42 0.94 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.13 348.10 -10.02 -40.15 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.59 Total: -1.75 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.32 Total: -11.88 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -1.38 Total: -44.21 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.13 -10.02 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460412894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.693 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds