Wall clock time and date at job start Tue Mar 31 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.50714 * 2 1 4 4 C 1.53099 * 109.54127 * 120.10940 * 2 1 3 5 5 O 1.43011 * 109.25456 * 176.80512 * 4 2 1 6 6 C 1.43006 * 113.74199 * 301.32755 * 5 4 2 7 7 C 1.53095 * 109.25974 * 58.67088 * 6 5 4 8 8 N 1.47014 * 109.26008 * 303.15468 * 7 6 5 9 9 C 1.46898 * 111.00295 * 182.38777 * 8 7 6 10 10 C 1.53003 * 109.46867 * 46.36832 * 9 8 7 11 11 N 1.46898 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.46842 * 110.99916 * 294.20493 * 11 10 9 13 13 C 1.53044 * 109.52547 * 174.16275 * 12 11 10 14 14 C 1.53124 * 109.27546 * 59.17874 * 13 12 11 15 15 C 1.53121 * 109.16046 * 302.34820 * 14 13 12 16 16 H 1.09001 * 109.50597 * 297.71070 * 15 14 13 17 17 C 1.50703 * 109.50154 * 177.63521 * 15 14 13 18 18 H 1.08002 * 120.00156 * 275.20401 * 17 15 14 19 19 C 1.37876 * 120.00200 * 95.19911 * 17 15 14 20 20 N 1.31512 * 120.00442 * 185.51537 * 19 17 15 21 21 Si 1.86801 * 119.99612 * 5.51751 * 19 17 15 22 22 H 1.48505 * 109.47182 * 84.78223 * 21 19 17 23 23 H 1.48504 * 109.46993 * 204.78145 * 21 19 17 24 24 H 1.48506 * 109.47365 * 324.78044 * 21 19 17 25 25 C 1.46852 * 110.99802 * 170.00027 * 11 10 9 26 26 H 1.09006 * 109.46932 * 180.09088 * 1 2 3 27 27 H 1.08998 * 109.47283 * 300.08674 * 1 2 3 28 28 H 1.08995 * 109.47098 * 60.09270 * 1 2 3 29 29 H 1.09003 * 109.50338 * 296.73995 * 4 2 1 30 30 H 1.08996 * 109.51042 * 56.82381 * 4 2 1 31 31 H 1.08996 * 109.51081 * 178.60819 * 6 5 4 32 32 H 1.09004 * 109.50479 * 298.69244 * 6 5 4 33 33 H 1.09000 * 109.51035 * 183.21992 * 7 6 5 34 34 H 1.09004 * 109.50495 * 63.08448 * 7 6 5 35 35 H 1.08994 * 109.47251 * 286.36377 * 9 8 7 36 36 H 1.08999 * 109.46945 * 166.36200 * 9 8 7 37 37 H 1.08994 * 109.47556 * 59.99733 * 10 9 8 38 38 H 1.09001 * 109.46808 * 299.99985 * 10 9 8 39 39 H 1.08998 * 109.46245 * 54.14890 * 12 11 10 40 40 H 1.09000 * 109.46480 * 294.17871 * 12 11 10 41 41 H 1.09000 * 109.49787 * 299.24245 * 13 12 11 42 42 H 1.08991 * 109.50491 * 179.11770 * 13 12 11 43 43 H 1.08997 * 109.52256 * 62.25428 * 14 13 12 44 44 H 1.08998 * 109.52235 * 182.37892 * 14 13 12 45 45 H 0.96997 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.46516 * 65.82151 * 25 11 10 47 47 H 1.08998 * 109.45150 * 305.84405 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0422 -0.7238 1.2481 5 8 3.4703 -0.7856 1.2048 6 6 3.9828 -1.4563 0.0504 7 6 3.4904 -0.7400 -1.2099 8 7 2.0210 -0.6947 -1.1991 9 6 1.5046 -0.0641 -2.4212 10 6 2.2245 -0.6469 -3.6390 11 7 1.7078 -0.0168 -4.8612 12 6 0.2991 -0.3693 -5.0798 13 6 -0.2453 0.4167 -6.2749 14 6 0.5828 0.0830 -7.5189 15 6 2.0529 0.4142 -7.2478 16 1 2.1562 1.4824 -7.0571 17 6 2.8835 0.0345 -8.4466 18 1 3.2372 -0.9797 -8.5592 19 6 3.1918 0.9819 -9.3997 20 7 3.8229 0.6285 -10.4981 21 14 2.7132 2.7674 -9.1308 22 1 3.7577 3.4431 -8.3197 23 1 2.5878 3.4494 -10.4440 24 1 1.4135 2.8291 -8.4149 25 6 2.5306 -0.3718 -6.0246 26 1 -0.3633 -1.0277 0.0016 27 1 -0.3634 0.5152 0.8892 28 1 -0.3633 0.5124 -0.8908 29 1 1.7282 -0.1796 2.1389 30 1 1.6341 -1.7341 1.2762 31 1 5.0724 -1.4420 0.0749 32 1 3.6324 -2.4884 0.0436 33 1 3.8313 -1.2808 -2.0927 34 1 3.8856 0.2757 -1.2292 35 1 1.6782 1.0110 -2.3766 36 1 0.4350 -0.2563 -2.5052 37 1 2.0509 -1.7221 -3.6837 38 1 3.2942 -0.4548 -3.5550 39 1 -0.2792 -0.1230 -4.1894 40 1 0.2190 -1.4376 -5.2808 41 1 -0.1782 1.4849 -6.0688 42 1 -1.2863 0.1432 -6.4465 43 1 0.4846 -0.9781 -7.7479 44 1 0.2253 0.6724 -8.3633 45 1 4.0401 1.2951 -11.1684 46 1 2.4400 -1.4400 -6.2212 47 1 3.5729 -0.1272 -5.8202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460412894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:37 Heat of formation + Delta-G solvation = -64.335360 kcal Electronic energy + Delta-G solvation = -23375.448425 eV Core-core repulsion = 20170.824520 eV Total energy + Delta-G solvation = -3204.623906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93341 -39.85582 -37.30913 -35.47582 -34.19125 -33.36399 -32.01198 -30.45778 -28.22252 -27.18343 -26.93403 -24.38106 -23.84469 -23.18463 -21.84840 -20.90389 -20.44541 -19.00150 -17.68119 -17.28826 -16.83968 -16.51627 -16.29740 -16.04525 -15.69081 -15.49871 -15.38676 -14.96474 -14.63216 -14.50081 -14.30010 -14.12996 -13.57767 -13.35740 -13.09831 -12.95734 -12.93045 -12.86714 -12.75317 -12.42919 -12.25614 -12.10909 -11.84448 -11.77076 -11.60435 -11.46152 -11.30147 -11.05973 -10.78409 -10.63605 -10.58690 -9.41179 -9.22233 -8.29879 -6.33267 1.35593 1.36311 1.48410 2.35368 2.55211 2.92649 3.05425 3.20506 3.75668 3.83394 3.93531 4.06041 4.10758 4.15517 4.21072 4.23515 4.28485 4.34502 4.43820 4.48483 4.55517 4.62617 4.67398 4.71489 4.79077 4.80266 4.85317 4.86640 4.89710 4.90800 4.98953 5.02594 5.07153 5.10228 5.21137 5.25811 5.30820 5.55555 5.64233 5.74758 5.89137 5.97497 6.13448 6.16924 6.27970 6.37628 6.74853 7.33153 8.87194 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.003660 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.227533 B = 7648.244596 C = 8089.645281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 H 0.038 0.962 4 C 0.068 3.932 5 O -0.405 6.405 6 C 0.065 3.935 7 C 0.010 3.990 8 N -0.536 5.536 9 C 0.071 3.929 10 C 0.057 3.943 11 N -0.547 5.547 12 C 0.061 3.939 13 C -0.113 4.113 14 C -0.111 4.111 15 C 0.019 3.981 16 H 0.034 0.966 17 C -0.516 4.516 18 H 0.029 0.971 19 C 0.014 3.986 20 N -0.951 5.951 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.245 1.245 25 C 0.086 3.914 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.265 0.735 46 H 0.014 0.986 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -1.435 24.327 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 H 0.056 0.944 4 C -0.009 4.009 5 O -0.324 6.324 6 C -0.012 4.012 7 C -0.118 4.118 8 N -0.262 5.262 9 C -0.057 4.057 10 C -0.071 4.071 11 N -0.272 5.272 12 C -0.067 4.067 13 C -0.151 4.151 14 C -0.149 4.149 15 C 0.000 4.000 16 H 0.052 0.948 17 C -0.554 4.554 18 H 0.047 0.953 19 C -0.183 4.183 20 N -0.591 5.591 21 Si 0.768 3.232 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.169 1.169 25 C -0.042 4.042 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.032 0.968 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.693 -1.281 24.394 25.611 hybrid contribution 0.526 0.442 -1.244 1.421 sum -7.167 -0.839 23.150 24.249 Atomic orbital electron populations 1.21782 0.92026 1.03094 1.02918 1.22402 0.97573 0.95761 0.90795 0.94434 1.22852 0.80069 1.00785 0.97173 1.87949 1.21825 1.78800 1.43815 1.22759 0.99794 0.95506 0.83142 1.22913 0.88294 1.00164 1.00418 1.62371 1.08426 1.53300 1.02102 1.22010 1.00049 0.96096 0.87558 1.22150 0.99285 0.96460 0.89160 1.61948 1.03118 1.59480 1.02704 1.22128 0.88558 0.97101 0.98874 1.21637 0.99036 1.00411 0.94013 1.21740 0.96507 0.99662 0.97025 1.19110 0.93003 0.96050 0.91877 0.94807 1.21255 1.32174 0.96285 1.05730 0.95280 1.25903 0.94579 1.03520 0.94297 1.70057 1.43379 1.35938 1.09712 0.85791 0.80434 0.79653 0.77355 1.19448 1.21502 1.16907 1.21908 0.96102 0.96424 0.89794 0.91436 0.90186 0.92401 0.86803 0.91804 0.87110 0.91818 0.88962 0.94872 0.94842 0.89376 0.94494 0.91154 0.88821 0.95479 0.92036 0.89960 0.94046 0.94283 0.92560 0.96813 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.90 71.99 0.64 -1.27 16 2 C 0.04 0.76 2.55 44.93 0.11 0.87 16 3 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.07 1.09 6.29 72.02 0.45 1.54 16 5 O -0.41 -8.29 10.83 -148.98 -1.61 -9.90 16 6 C 0.06 1.15 7.01 72.01 0.50 1.66 16 7 C 0.01 0.21 4.94 86.31 0.43 0.63 16 8 N -0.54 -11.00 4.69 -869.99 -4.08 -15.08 16 9 C 0.07 1.59 4.41 86.30 0.38 1.97 16 10 C 0.06 1.55 4.23 86.30 0.36 1.91 16 11 N -0.55 -17.88 4.66 -896.36 -4.17 -22.06 16 12 C 0.06 1.75 5.29 86.33 0.46 2.21 16 13 C -0.11 -3.56 6.09 30.65 0.19 -3.37 16 14 C -0.11 -4.58 5.27 30.68 0.16 -4.41 16 15 C 0.02 0.88 1.94 -11.49 -0.02 0.86 16 16 H 0.03 1.61 5.26 -2.39 -0.01 1.60 16 17 C -0.52 -29.59 8.86 25.60 0.23 -29.37 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 19 C 0.01 0.82 5.47 84.65 0.46 1.28 16 20 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 21 Si 0.94 45.00 27.01 68.60 1.85 46.85 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.25 -10.91 6.80 99.48 0.68 -10.23 16 25 C 0.09 3.48 4.73 86.32 0.41 3.88 16 26 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.85 6.60 -2.39 -0.02 0.84 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.87 6.05 -2.39 -0.01 1.86 16 34 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.09 1.84 5.15 -2.39 -0.01 1.83 16 37 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 38 H 0.07 1.93 6.12 -2.39 -0.01 1.91 16 39 H 0.09 2.17 6.21 -2.39 -0.01 2.15 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.06 2.36 8.02 -2.39 -0.02 2.35 16 Total: -1.00 -66.28 348.10 -2.06 -68.34 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.88 Total: 13.01 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.77 Total: -21.61 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -7.95 Total: -96.69 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.61 Total: -9.90 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.85 Total: 46.85 kcal Total: -66.28 -2.06 -68.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460412894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.005 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds