Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 C 1.53004 * 109.47149 * 119.99663 * 2 1 3 5 5 H 1.09002 * 109.46984 * 300.00181 * 4 2 1 6 6 C 1.52998 * 109.46956 * 59.99719 * 4 2 1 7 7 C 1.50692 * 109.47208 * 180.02562 * 4 2 1 8 8 O 1.21280 * 120.00229 * 335.19807 * 7 4 2 9 9 N 1.34780 * 120.00063 * 155.19300 * 7 4 2 10 10 C 1.46925 * 120.62778 * 4.91620 * 9 7 4 11 11 C 1.53189 * 108.89297 * 233.67768 * 10 9 7 12 12 C 1.53041 * 109.31662 * 305.29599 * 11 10 9 13 13 C 1.53046 * 109.53695 * 61.36291 * 12 11 10 14 14 C 1.47205 * 120.81381 * 185.06106 * 9 7 4 15 15 H 1.09000 * 109.67721 * 246.22281 * 14 9 7 16 16 C 1.52992 * 109.53410 * 6.53323 * 14 9 7 17 17 N 1.46506 * 109.47367 * 287.77315 * 16 14 9 18 18 C 1.36936 * 119.99992 * 186.21406 * 17 16 14 19 19 H 1.08000 * 120.00071 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99768 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99779 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99808 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46937 * 89.99597 * 22 20 18 24 24 H 1.48505 * 109.46616 * 209.99265 * 22 20 18 25 25 H 1.48495 * 109.47220 * 329.99444 * 22 20 18 26 26 H 1.09002 * 109.47325 * 300.00365 * 1 2 3 27 27 H 1.08998 * 109.47002 * 60.00447 * 1 2 3 28 28 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47214 * 240.00121 * 2 1 3 30 30 H 1.08998 * 109.46827 * 299.99660 * 3 2 1 31 31 H 1.09002 * 109.47329 * 59.99638 * 3 2 1 32 32 H 1.08997 * 109.47276 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47209 * 180.57077 * 6 4 2 34 34 H 1.08998 * 109.47920 * 300.58019 * 6 4 2 35 35 H 1.09005 * 109.46984 * 60.58029 * 6 4 2 36 36 H 1.09001 * 109.58838 * 113.82454 * 10 9 7 37 37 H 1.09002 * 109.58893 * 353.53920 * 10 9 7 38 38 H 1.09001 * 109.49998 * 65.24729 * 11 10 9 39 39 H 1.09004 * 109.50186 * 185.31221 * 11 10 9 40 40 H 1.08997 * 109.46565 * 181.38077 * 12 11 10 41 41 H 1.09005 * 109.45605 * 301.35856 * 12 11 10 42 42 H 1.09000 * 109.49789 * 58.58710 * 13 12 11 43 43 H 1.09001 * 109.49477 * 178.68699 * 13 12 11 44 44 H 1.09000 * 109.47644 * 47.77628 * 16 14 9 45 45 H 1.09008 * 109.46972 * 167.77240 * 16 14 9 46 46 H 0.96995 * 119.99197 * 6.21297 * 17 16 14 47 47 H 0.96999 * 119.99312 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1636 1.2494 7 6 3.5470 -0.7206 1.2496 8 8 4.1536 -0.6252 0.2038 9 7 4.2207 -0.8262 2.4122 10 6 3.5039 -1.0501 3.6750 11 6 3.9214 0.0278 4.6803 12 6 5.4456 0.0286 4.8177 13 6 6.0813 0.3575 3.4649 14 6 5.6882 -0.7167 2.4459 15 1 6.1210 -1.6734 2.7382 16 6 6.2037 -0.3224 1.0604 17 7 6.0749 -1.4621 0.1489 18 6 6.5905 -1.3876 -1.1176 19 1 7.0924 -0.4888 -1.4443 20 6 6.4689 -2.4676 -1.9811 21 7 6.9639 -2.3958 -3.1985 22 14 5.6013 -4.0224 -1.4156 23 1 4.1537 -3.9244 -1.7320 24 1 6.1827 -5.1960 -2.1157 25 1 5.7779 -4.1827 0.0500 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.8849 -2.6745 2.1445 34 1 0.4400 -2.1638 1.2390 35 1 1.9018 -2.6805 0.3646 36 1 3.7564 -2.0346 4.0690 37 1 2.4295 -0.9909 3.5009 38 1 3.5875 1.0035 4.3273 39 1 3.4685 -0.1831 5.6491 40 1 5.7438 0.7781 5.5508 41 1 5.7811 -0.9550 5.1469 42 1 5.7270 1.3300 3.1233 43 1 7.1661 0.3809 3.5688 44 1 5.6191 0.5151 0.6799 45 1 7.2517 -0.0311 1.1321 46 1 5.6245 -2.2693 0.4425 47 1 6.8786 -3.1504 -3.8019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480362224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -2.941223 kcal Electronic energy + Delta-G solvation = -24907.120471 eV Core-core repulsion = 21705.158814 eV Total energy + Delta-G solvation = -3201.961656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41739 -37.60359 -35.98695 -34.31338 -32.75045 -31.95371 -30.39619 -30.13303 -27.20980 -26.32726 -24.56372 -23.94924 -22.50817 -21.67699 -20.54624 -19.74092 -18.49266 -17.48812 -16.50820 -15.74559 -14.96783 -14.64728 -14.56706 -14.32992 -14.29471 -13.90320 -13.81166 -13.31884 -13.27719 -12.62396 -12.55556 -12.32262 -12.25115 -12.15763 -11.91851 -11.90296 -11.75581 -11.38386 -11.20191 -11.04847 -10.84259 -10.74263 -10.71245 -10.61179 -10.48375 -10.31089 -10.19497 -9.93298 -9.34433 -8.64719 -8.37742 -8.09017 -6.73525 -5.50674 -2.75870 3.27972 3.32388 3.51634 3.56652 3.58641 4.67196 4.72986 4.80093 4.82599 4.83453 4.94566 5.06767 5.09593 5.27562 5.34942 5.38608 5.51800 5.55159 5.55750 5.64316 5.71862 5.76346 5.77644 5.81677 5.82351 5.88114 5.94833 5.96944 5.98644 6.02753 6.07149 6.08591 6.19459 6.26201 6.33959 6.38245 6.57469 6.61071 6.63311 6.89020 7.20918 7.91161 8.25019 8.68137 8.91304 9.50252 10.23961 10.45850 11.69668 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.008203 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.739906 B = 3412.377519 C = 4593.772062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.103 4.103 5 H 0.081 0.919 6 C -0.146 4.146 7 C 0.477 3.523 8 O -0.444 6.444 9 N -0.618 5.618 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.117 4.117 13 C -0.126 4.126 14 C 0.137 3.863 15 H 0.066 0.934 16 C 0.170 3.830 17 N -0.721 5.721 18 C -0.205 4.205 19 H 0.084 0.916 20 C -0.006 4.006 21 N -0.946 5.946 22 Si 0.886 3.114 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.285 1.285 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.357 0.643 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 5.413 18.259 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.203 4.203 4 C -0.125 4.125 5 H 0.099 0.901 6 C -0.203 4.203 7 C 0.262 3.738 8 O -0.313 6.313 9 N -0.356 5.356 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.155 4.155 13 C -0.165 4.165 14 C 0.034 3.966 15 H 0.084 0.916 16 C 0.042 3.958 17 N -0.365 5.365 18 C -0.336 4.336 19 H 0.102 0.898 20 C -0.199 4.199 21 N -0.597 5.597 22 Si 0.718 3.282 23 H -0.216 1.216 24 H -0.224 1.224 25 H -0.211 1.211 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.189 0.811 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.806 5.559 17.431 21.774 hybrid contribution -0.752 -1.245 0.497 1.537 sum -12.558 4.314 17.928 22.310 Atomic orbital electron populations 1.21893 0.95456 1.01555 1.01396 1.20945 0.94680 0.96501 0.97811 1.21840 1.02646 0.95270 1.00584 1.21393 0.93387 0.97858 0.99832 0.90054 1.21823 1.01141 0.94719 1.02647 1.20643 0.89370 0.79553 0.84199 1.91242 1.66910 1.42837 1.30276 1.48116 1.06415 1.74524 1.06564 1.21658 0.97099 0.98087 0.84731 1.21917 0.96683 0.99732 0.98920 1.21496 0.95049 1.01699 0.97268 1.21892 1.00764 0.99301 0.94545 1.21564 0.79513 0.98062 0.97489 0.91595 1.20746 0.96284 0.92680 0.86063 1.42522 1.68309 1.13125 1.12524 1.19008 1.26537 1.00301 0.87753 0.89770 1.24526 1.01681 0.97837 0.95876 1.69704 1.52534 1.31234 1.06260 0.86498 0.79878 0.84622 0.77206 1.21556 1.22431 1.21137 0.93117 0.92663 0.92550 0.89722 0.92933 0.93777 0.91364 0.92624 0.91644 0.91824 0.92111 0.89933 0.91609 0.91294 0.91992 0.91957 0.91499 0.90805 0.94287 0.95837 0.81073 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.84 37.16 0.33 -1.28 16 2 C -0.08 -1.15 2.14 -90.61 -0.19 -1.34 16 3 C -0.15 -2.08 8.91 37.16 0.33 -1.75 16 4 C -0.10 -1.40 1.45 -91.77 -0.13 -1.54 16 5 H 0.08 0.92 6.50 -51.93 -0.34 0.58 16 6 C -0.15 -1.86 8.65 37.16 0.32 -1.54 16 7 C 0.48 8.26 5.60 -10.99 -0.06 8.20 16 8 O -0.44 -9.97 8.72 5.56 0.05 -9.93 16 9 N -0.62 -9.26 2.98 -165.02 -0.49 -9.75 16 10 C 0.11 1.16 5.83 -3.71 -0.02 1.14 16 11 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 12 C -0.12 -1.14 5.88 -26.69 -0.16 -1.30 16 13 C -0.13 -1.56 5.35 -26.61 -0.14 -1.70 16 14 C 0.14 2.21 2.92 -67.45 -0.20 2.01 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C 0.17 3.57 4.89 -4.04 -0.02 3.55 16 17 N -0.72 -18.58 2.98 -59.90 -0.18 -18.76 16 18 C -0.21 -6.27 10.24 -15.06 -0.15 -6.42 16 19 H 0.08 2.76 8.06 -52.49 -0.42 2.33 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.95 -31.76 13.97 55.49 0.78 -30.98 16 22 Si 0.89 24.32 27.74 -169.99 -4.71 19.61 16 23 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.30 -8.19 7.11 56.52 0.40 -7.78 16 25 H -0.28 -7.44 6.52 56.52 0.37 -7.07 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 6.41 -51.93 -0.33 0.25 16 29 H 0.08 1.49 7.87 -51.93 -0.41 1.08 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.18 6.45 -51.93 -0.33 0.84 16 33 H 0.05 0.64 7.33 -51.93 -0.38 0.26 16 34 H 0.06 0.68 6.40 -51.93 -0.33 0.34 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.77 5.07 -51.93 -0.26 0.51 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.89 6.44 -51.93 -0.33 0.56 16 45 H 0.02 0.50 8.10 -51.92 -0.42 0.08 16 46 H 0.36 9.26 4.97 -40.82 -0.20 9.06 16 47 H 0.25 8.14 8.31 -40.82 -0.34 7.80 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -35.25 347.15 -8.12 -43.37 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.44 Total: 4.82 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.36 Total: -3.61 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.10 Total: -59.49 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.05 Total: -9.93 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.71 Total: 19.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.25 -8.12 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480362224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.427 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds