Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 C 1.53002 * 109.47004 * 119.99397 * 2 1 3 5 5 H 1.09003 * 109.47609 * 300.00425 * 4 2 1 6 6 C 1.53000 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.50707 * 109.47060 * 60.00204 * 4 2 1 8 8 O 1.21281 * 119.99389 * 31.67524 * 7 4 2 9 9 N 1.34771 * 120.00097 * 211.67388 * 7 4 2 10 10 C 1.46921 * 120.63112 * 353.96682 * 9 7 4 11 11 C 1.53197 * 108.77610 * 233.33204 * 10 9 7 12 12 C 1.53040 * 109.31190 * 305.36635 * 11 10 9 13 13 C 1.53038 * 109.54018 * 61.36179 * 12 11 10 14 14 C 1.46927 * 120.63141 * 173.68520 * 9 7 4 15 15 H 1.08998 * 109.58589 * 246.45640 * 14 9 7 16 16 C 1.53005 * 109.58294 * 6.87861 * 14 9 7 17 17 N 1.46499 * 109.47026 * 286.20583 * 16 14 9 18 18 C 1.36941 * 119.99564 * 182.76793 * 17 16 14 19 19 H 1.07997 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99639 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99886 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99833 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47457 * 89.99736 * 22 20 18 24 24 H 1.48501 * 109.47150 * 209.99855 * 22 20 18 25 25 H 1.48507 * 109.47305 * 329.99564 * 22 20 18 26 26 H 1.09003 * 109.47285 * 299.99979 * 1 2 3 27 27 H 1.09000 * 109.47150 * 60.00390 * 1 2 3 28 28 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47619 * 239.99333 * 2 1 3 30 30 H 1.08998 * 109.47690 * 59.99591 * 3 2 1 31 31 H 1.09006 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46806 * 299.99821 * 3 2 1 33 33 H 1.09011 * 109.46790 * 65.59885 * 6 4 2 34 34 H 1.08997 * 109.47393 * 185.59363 * 6 4 2 35 35 H 1.09000 * 109.47270 * 305.60464 * 6 4 2 36 36 H 1.09001 * 109.58820 * 353.11432 * 10 9 7 37 37 H 1.08999 * 109.58868 * 113.40086 * 10 9 7 38 38 H 1.08996 * 109.49734 * 65.31719 * 11 10 9 39 39 H 1.08998 * 109.50047 * 185.38025 * 11 10 9 40 40 H 1.09001 * 109.45858 * 181.38510 * 12 11 10 41 41 H 1.09007 * 109.45818 * 301.35793 * 12 11 10 42 42 H 1.08999 * 109.49381 * 58.58479 * 13 12 11 43 43 H 1.08995 * 109.49731 * 178.68387 * 13 12 11 44 44 H 1.08999 * 109.47353 * 46.20898 * 16 14 9 45 45 H 1.09001 * 109.47010 * 166.20924 * 16 14 9 46 46 H 0.97000 * 120.00231 * 2.77470 * 17 16 14 47 47 H 0.97008 * 119.99352 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 6 1.5376 -2.1420 1.2494 8 8 1.3645 -2.7240 0.1995 9 7 1.2808 -2.7659 2.4161 10 6 1.6089 -2.1240 3.6963 11 6 2.4694 -3.0846 4.5233 12 6 1.7432 -4.4247 4.6600 13 6 1.5327 -5.0367 3.2732 14 6 0.6617 -4.0983 2.4321 15 1 -0.3341 -4.0332 2.8705 16 6 0.5620 -4.6346 1.0027 17 7 -0.5045 -3.9277 0.2892 18 6 -0.8176 -4.2792 -0.9968 19 1 -0.2788 -5.0779 -1.4848 20 6 -1.8278 -3.6090 -1.6731 21 7 -2.4848 -2.6360 -1.0782 22 14 -2.2555 -4.0890 -3.4269 23 1 -3.3041 -5.1405 -3.4108 24 1 -2.7598 -2.8982 -4.1571 25 1 -1.0426 -4.6099 -4.1074 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.3010 1.3490 34 1 3.9332 -1.3198 2.0848 35 1 3.9330 -1.1466 0.3132 36 1 2.1630 -1.2036 3.5122 37 1 0.6903 -1.8957 4.2367 38 1 3.4258 -3.2384 4.0234 39 1 2.6402 -2.6602 5.5126 40 1 2.3423 -5.1019 5.2687 41 1 0.7761 -4.2665 5.1374 42 1 2.4979 -5.1721 2.7851 43 1 1.0364 -6.0019 3.3730 44 1 1.5099 -4.4767 0.4883 45 1 0.3363 -5.7007 1.0295 46 1 -0.9887 -3.2105 0.7275 47 1 -3.1905 -2.1675 -1.5510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480362226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = -9.165925 kcal Electronic energy + Delta-G solvation = -24905.989385 eV Core-core repulsion = 21703.757805 eV Total energy + Delta-G solvation = -3202.231579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25851 -37.42574 -35.76369 -34.16483 -32.57671 -31.87777 -30.20390 -29.70219 -26.92265 -26.00695 -24.35099 -23.80304 -22.63006 -21.60032 -20.56485 -19.64452 -18.17740 -17.02376 -16.35418 -15.50624 -14.99021 -14.47387 -14.42158 -14.27562 -13.94035 -13.67975 -13.48226 -13.28527 -13.15300 -12.85759 -12.35291 -12.06797 -12.00875 -11.89685 -11.76861 -11.65927 -11.59201 -11.15239 -10.98424 -10.86619 -10.67282 -10.66300 -10.52979 -10.27681 -10.25485 -10.21893 -10.03697 -9.78916 -9.43306 -8.67263 -8.05623 -7.93959 -6.47205 -5.48285 -2.68683 3.44330 3.50325 3.59110 3.63610 3.65591 4.78419 4.80926 4.86881 4.94821 5.00151 5.09606 5.24231 5.28894 5.42513 5.48544 5.56260 5.63596 5.69020 5.71009 5.80255 5.85188 5.86411 5.89940 5.92693 6.03114 6.05753 6.10250 6.12640 6.18896 6.23252 6.26317 6.34482 6.40919 6.48464 6.61909 6.72729 6.78520 6.88979 7.04785 7.40465 7.43676 7.95206 8.08031 8.70329 9.08472 9.81521 10.41880 10.77320 11.75403 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.007482 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.125841 B = 3741.188403 C = 5213.447334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.104 4.104 5 H 0.079 0.921 6 C -0.139 4.139 7 C 0.494 3.506 8 O -0.453 6.453 9 N -0.617 5.617 10 C 0.109 3.891 11 C -0.133 4.133 12 C -0.117 4.117 13 C -0.127 4.127 14 C 0.142 3.858 15 H 0.065 0.935 16 C 0.155 3.845 17 N -0.703 5.703 18 C -0.201 4.201 19 H 0.063 0.937 20 C -0.021 4.021 21 N -0.937 5.937 22 Si 0.898 3.102 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.286 1.286 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.007 0.993 46 H 0.378 0.622 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.143 4.399 13.074 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.126 4.126 5 H 0.097 0.903 6 C -0.197 4.197 7 C 0.279 3.721 8 O -0.322 6.322 9 N -0.355 5.355 10 C -0.015 4.015 11 C -0.171 4.171 12 C -0.155 4.155 13 C -0.165 4.165 14 C 0.038 3.962 15 H 0.083 0.917 16 C 0.028 3.972 17 N -0.346 5.346 18 C -0.333 4.333 19 H 0.081 0.919 20 C -0.216 4.216 21 N -0.588 5.588 22 Si 0.731 3.269 23 H -0.224 1.224 24 H -0.222 1.222 25 H -0.212 1.212 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.211 0.789 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.058 3.988 12.269 17.659 hybrid contribution -0.514 0.158 -0.667 0.857 sum 11.545 4.146 11.602 16.884 Atomic orbital electron populations 1.21895 0.93488 1.05459 0.99890 1.20941 0.97154 0.94448 0.96976 1.21900 1.00351 0.96584 1.01403 1.21413 0.96550 0.94391 1.00227 0.90312 1.21757 0.93854 1.01765 1.02281 1.20447 0.79547 0.88210 0.83854 1.91018 1.46213 1.64383 1.30553 1.47953 1.63865 1.18353 1.05283 1.21622 0.98826 0.95849 0.85186 1.21903 0.99212 0.96252 0.99740 1.21496 1.00472 0.96352 0.97184 1.21900 1.00738 0.98696 0.95216 1.21485 0.94850 0.81474 0.98346 0.91683 1.21029 0.95093 0.93032 0.88063 1.42153 1.38244 1.41141 1.13064 1.19113 1.11844 1.12360 0.90009 0.91944 1.24545 1.00036 0.99261 0.97728 1.69631 1.26689 1.26070 1.36439 0.86293 0.77780 0.76923 0.85910 1.22391 1.22211 1.21242 0.94529 0.93431 0.88541 0.90313 0.93200 0.93003 0.92813 0.91954 0.92885 0.92026 0.90053 0.92154 0.91733 0.91354 0.92163 0.91936 0.91700 0.91059 0.93049 0.97564 0.78886 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.92 37.16 0.33 -2.61 16 2 C -0.08 -1.26 2.17 -90.62 -0.20 -1.45 16 3 C -0.15 -1.87 8.84 37.16 0.33 -1.54 16 4 C -0.10 -1.54 1.48 -91.77 -0.14 -1.68 16 5 H 0.08 1.04 6.41 -51.93 -0.33 0.71 16 6 C -0.14 -1.69 8.45 37.16 0.31 -1.37 16 7 C 0.49 9.03 5.40 -10.98 -0.06 8.97 16 8 O -0.45 -10.48 9.53 5.56 0.05 -10.43 16 9 N -0.62 -9.82 2.97 -165.22 -0.49 -10.31 16 10 C 0.11 1.28 6.13 -3.71 -0.02 1.25 16 11 C -0.13 -1.30 6.08 -26.61 -0.16 -1.47 16 12 C -0.12 -1.24 5.88 -26.69 -0.16 -1.39 16 13 C -0.13 -1.68 5.33 -26.61 -0.14 -1.83 16 14 C 0.14 2.43 2.90 -67.60 -0.20 2.24 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.16 3.40 4.89 -4.04 -0.02 3.38 16 17 N -0.70 -18.66 3.43 -59.91 -0.21 -18.86 16 18 C -0.20 -5.95 9.74 -15.06 -0.15 -6.09 16 19 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 21 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 22 Si 0.90 23.85 29.55 -169.99 -5.02 18.82 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 2.37 6.64 -51.93 -0.35 2.03 16 29 H 0.08 1.49 7.85 -51.93 -0.41 1.09 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.63 6.74 -51.92 -0.35 0.28 16 34 H 0.05 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.84 5.25 -51.93 -0.27 0.57 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 1.23 5.95 -52.11 -0.31 0.92 16 45 H 0.01 0.15 8.08 -51.93 -0.42 -0.27 16 46 H 0.38 10.59 7.45 -40.82 -0.30 10.29 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -32.64 352.33 -8.52 -41.16 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.53 Total: 6.87 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.36 Total: -4.34 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.03 Total: -57.39 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.05 Total: -10.43 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.64 -8.52 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480362226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.995 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds