Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47428 * 2 1 4 4 C 1.50700 * 109.47285 * 240.00432 * 2 1 3 5 5 O 1.21289 * 119.99751 * 239.99854 * 4 2 1 6 6 N 1.34777 * 120.00570 * 59.99886 * 4 2 1 7 7 C 1.46499 * 120.00316 * 180.02562 * 6 4 2 8 8 H 1.08995 * 109.52038 * 324.91287 * 7 6 4 9 9 C 1.53043 * 109.49489 * 204.83722 * 7 6 4 10 10 C 1.53040 * 109.53566 * 178.68066 * 9 7 6 11 11 C 1.53189 * 109.31179 * 61.36403 * 10 9 7 12 12 N 1.46929 * 108.77894 * 305.36367 * 11 10 9 13 13 C 1.36936 * 120.63137 * 233.58774 * 12 11 10 14 14 H 1.07998 * 119.99901 * 27.69386 * 13 12 11 15 15 C 1.38808 * 119.99799 * 207.68682 * 13 12 11 16 16 N 1.31615 * 119.99919 * 17.37347 * 15 13 12 17 17 Si 1.86803 * 119.99890 * 197.36546 * 15 13 12 18 18 H 1.48503 * 109.47142 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46750 * 120.00271 * 17 15 13 20 20 H 1.48496 * 109.47304 * 240.00264 * 17 15 13 21 21 C 1.46929 * 118.73367 * 53.60804 * 12 11 10 22 22 C 1.52996 * 109.47318 * 120.00226 * 2 1 3 23 23 C 1.53002 * 109.47181 * 180.02562 * 22 2 1 24 24 C 1.53004 * 109.46831 * 300.00030 * 22 2 1 25 25 C 1.52997 * 109.47201 * 60.00096 * 22 2 1 26 26 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47319 * 299.99658 * 1 2 3 28 28 H 1.09001 * 109.46911 * 60.00216 * 1 2 3 29 29 H 0.97005 * 119.99159 * 0.02562 * 6 4 2 30 30 H 1.09003 * 109.46007 * 58.66241 * 9 7 6 31 31 H 1.08998 * 109.46065 * 298.70164 * 9 7 6 32 32 H 1.08999 * 109.49903 * 301.41506 * 10 9 7 33 33 H 1.09001 * 109.49684 * 181.31603 * 10 9 7 34 34 H 1.09000 * 109.58654 * 185.57619 * 11 10 9 35 35 H 1.09003 * 109.59112 * 65.15466 * 11 10 9 36 36 H 0.97007 * 119.99487 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58814 * 66.18105 * 21 12 11 38 38 H 1.09006 * 109.58020 * 186.60828 * 21 12 11 39 39 H 1.08999 * 109.47179 * 60.00104 * 23 22 2 40 40 H 1.09001 * 109.46774 * 179.97438 * 23 22 2 41 41 H 1.08994 * 109.46780 * 299.99592 * 23 22 2 42 42 H 1.09003 * 109.47085 * 60.00057 * 24 22 2 43 43 H 1.08999 * 109.46891 * 179.97438 * 24 22 2 44 44 H 1.08997 * 109.47006 * 299.99797 * 24 22 2 45 45 H 1.08994 * 109.47457 * 59.99981 * 25 22 2 46 46 H 1.09001 * 109.47043 * 180.02562 * 25 22 2 47 47 H 1.09003 * 109.47094 * 300.00175 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 1 3.1944 -1.3323 -3.4629 9 6 2.2428 0.0411 -4.8238 10 6 2.7835 -0.6713 -6.0657 11 6 1.8450 -1.8235 -6.4376 12 7 1.6787 -2.6950 -5.2665 13 6 1.9187 -4.0401 -5.3580 14 1 2.6238 -4.4145 -6.0854 15 6 1.2559 -4.9222 -4.5158 16 7 0.1707 -4.5350 -3.8797 17 14 1.9040 -6.6590 -4.2855 18 1 3.1286 -6.8431 -5.1053 19 1 2.2296 -6.8800 -2.8536 20 1 0.8696 -7.6343 -4.7142 21 6 1.2495 -2.0959 -3.9954 22 6 2.0400 -0.7213 1.2492 23 6 3.5700 -0.7207 1.2495 24 6 1.5300 0.0000 2.4984 25 6 1.5301 -2.1638 1.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1494 0.5390 -2.5436 30 1 2.8957 0.8767 -4.5714 31 1 1.2388 0.4135 -5.0270 32 1 3.7777 -1.0655 -5.8551 33 1 2.8395 0.0344 -6.8945 34 1 2.2757 -2.3947 -7.2600 35 1 0.8759 -1.4237 -6.7361 36 1 -0.2927 -5.1516 -3.2914 37 1 0.2319 -1.7182 -4.0946 38 1 1.2875 -2.8469 -3.2063 39 1 3.9330 0.3071 1.2497 40 1 3.9333 -1.2342 2.1397 41 1 3.9336 -1.2343 0.3595 42 1 0.4399 0.0000 2.4984 43 1 1.8929 -0.5141 3.3884 44 1 1.8933 1.0276 2.4984 45 1 1.8933 -2.6776 0.3592 46 1 1.8931 -2.6775 2.1393 47 1 0.4400 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490440550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -35.306553 kcal Electronic energy + Delta-G solvation = -24247.808750 eV Core-core repulsion = 21044.443628 eV Total energy + Delta-G solvation = -3203.365122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14502 -37.82969 -36.29312 -34.10456 -32.72525 -31.12725 -29.95228 -28.54247 -27.20890 -26.98245 -25.23935 -24.29077 -22.23428 -21.90609 -20.02348 -19.42498 -18.31929 -16.75644 -16.53708 -15.64574 -14.98592 -14.69201 -14.55732 -14.09795 -13.97455 -13.91526 -13.53587 -13.24602 -13.04039 -12.51397 -12.30847 -12.17636 -12.08413 -12.04379 -11.73311 -11.62809 -11.42237 -11.19553 -10.98113 -10.78775 -10.70152 -10.60174 -10.44232 -10.37519 -10.31041 -10.19763 -9.91538 -9.88141 -9.47871 -8.88678 -8.42224 -8.39142 -6.62743 -5.72960 -3.15865 3.13797 3.43708 3.51898 3.53199 3.65274 4.56253 4.69548 4.92376 4.93209 5.27815 5.38532 5.39672 5.43501 5.44852 5.53874 5.57938 5.65961 5.71351 5.73389 5.82122 5.88125 5.90005 6.00237 6.09371 6.11731 6.13748 6.17343 6.27520 6.35020 6.37431 6.43607 6.45524 6.53092 6.70934 6.73643 6.80187 6.84798 6.97948 7.11372 7.34808 7.76654 7.86431 8.04479 8.50893 8.80024 9.26037 9.90031 10.44836 11.34851 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.006007 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.030854 B = 4660.096900 C = 5805.168431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.514 3.486 5 O -0.524 6.524 6 N -0.722 5.722 7 C 0.117 3.883 8 H 0.080 0.920 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.142 3.858 12 N -0.589 5.589 13 C -0.255 4.255 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.291 1.291 21 C 0.168 3.832 22 C -0.045 4.045 23 C -0.153 4.153 24 C -0.142 4.142 25 C -0.156 4.156 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.390 0.610 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.252 0.748 37 H 0.015 0.985 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 13.294 7.780 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 H 0.106 0.894 4 C 0.300 3.700 5 O -0.400 6.400 6 N -0.372 5.372 7 C 0.012 3.988 8 H 0.099 0.901 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.016 3.984 12 N -0.312 5.312 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.218 1.218 21 C 0.041 3.959 22 C -0.046 4.046 23 C -0.210 4.210 24 C -0.200 4.200 25 C -0.213 4.213 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.223 0.777 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.867 12.447 7.941 14.882 hybrid contribution -0.106 -0.367 0.171 0.418 sum 1.762 12.081 8.113 14.658 Atomic orbital electron populations 1.21889 0.93249 1.03362 1.02035 1.21354 0.97337 1.00010 0.93514 0.89368 1.20471 0.80358 0.84727 0.84426 1.90603 1.37695 1.25704 1.86041 1.46127 1.53481 1.31480 1.06102 1.21927 1.00719 0.93982 0.82218 0.90149 1.21674 1.00600 0.97364 0.95765 1.21999 1.00590 0.98409 0.96077 1.20950 0.95422 0.91137 0.90894 1.43988 1.79651 1.03797 1.03766 1.19183 1.18110 0.81662 1.19534 0.91622 1.25010 0.95365 0.97827 1.01022 1.70031 1.16630 1.35331 1.32219 0.86262 0.78336 0.84549 0.77854 1.20231 1.21429 1.21792 1.21082 0.92050 0.92729 0.90022 1.20249 0.95982 0.95839 0.92493 1.22112 0.94372 1.00938 1.03597 1.21958 1.01021 0.99774 0.97201 1.22169 1.00256 0.95270 1.03604 0.91328 0.91637 0.92361 0.77703 0.93224 0.92375 0.92163 0.92718 0.92687 0.96483 0.93771 0.96700 0.88672 0.93947 0.93357 0.89496 0.92448 0.92722 0.93045 0.89228 0.93576 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.38 37.16 0.31 -1.38 16 2 C -0.10 -1.28 2.10 -91.78 -0.19 -1.48 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.51 8.69 6.53 -10.99 -0.07 8.61 16 5 O -0.52 -10.98 11.01 5.55 0.06 -10.92 16 6 N -0.72 -11.63 4.97 -53.69 -0.27 -11.90 16 7 C 0.12 2.28 2.60 -67.81 -0.18 2.10 16 8 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 9 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 10 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 11 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 12 N -0.59 -15.08 3.00 -172.32 -0.52 -15.59 16 13 C -0.26 -7.23 9.59 -15.06 -0.14 -7.37 16 14 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 15 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 16 N -0.90 -26.83 11.19 55.49 0.62 -26.21 16 17 Si 0.90 22.67 29.59 -169.99 -5.03 17.64 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C 0.17 4.10 4.88 -3.71 -0.02 4.08 16 22 C -0.05 -0.59 0.54 -154.51 -0.08 -0.67 16 23 C -0.15 -2.08 8.18 37.16 0.30 -1.78 16 24 C -0.14 -1.46 8.12 37.16 0.30 -1.16 16 25 C -0.16 -2.35 7.82 37.16 0.29 -2.06 16 26 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 27 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 28 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 29 H 0.39 5.02 8.02 -40.82 -0.33 4.69 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 2.73 6.04 -51.93 -0.31 2.42 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 42 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 1.70 5.51 -51.93 -0.29 1.41 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -31.61 350.47 -8.11 -39.72 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.37 Total: 4.44 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 0.11 Total: -2.46 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.16 Total: -53.70 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.06 Total: -10.92 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.61 -8.11 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490440550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.417 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds