Wall clock time and date at job start Tue Mar 31 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47105 * 2 1 4 4 C 1.46854 * 111.00010 * 190.00002 * 3 2 1 5 5 C 1.53038 * 109.52155 * 185.83694 * 4 3 2 6 6 C 1.53113 * 109.28173 * 300.82021 * 5 4 3 7 7 C 1.52996 * 109.52547 * 177.56174 * 6 5 4 8 8 N 1.46898 * 109.47279 * 175.75164 * 7 6 5 9 9 C 1.48560 * 111.00053 * 294.30941 * 8 7 6 10 10 C 1.54380 * 104.59715 * 200.96124 * 9 8 7 11 11 C 1.54260 * 105.06028 * 23.84987 * 10 9 8 12 12 O 1.42902 * 110.32368 * 118.89796 * 11 10 9 13 13 C 1.50700 * 110.32439 * 241.00517 * 11 10 9 14 14 H 1.07994 * 119.99846 * 117.17536 * 13 11 10 15 15 C 1.37878 * 119.99562 * 297.16879 * 13 11 10 16 16 N 1.31510 * 120.00511 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46932 * 90.00043 * 17 15 13 19 19 H 1.48497 * 109.47245 * 210.00203 * 17 15 13 20 20 H 1.48503 * 109.47000 * 330.00587 * 17 15 13 21 21 C 1.48720 * 111.01645 * 178.79951 * 8 7 6 22 22 C 1.53123 * 109.21092 * 57.62142 * 6 5 4 23 23 C 1.46847 * 110.99923 * 314.20733 * 3 2 1 24 24 H 1.08996 * 109.47263 * 300.00088 * 1 2 3 25 25 H 1.09002 * 109.46998 * 60.00294 * 1 2 3 26 26 H 1.09007 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47263 * 239.99912 * 2 1 3 28 28 H 1.09002 * 109.46998 * 119.99706 * 2 1 3 29 29 H 1.08996 * 109.45903 * 65.82122 * 4 3 2 30 30 H 1.09000 * 109.45876 * 305.85167 * 4 3 2 31 31 H 1.08996 * 109.50300 * 180.87610 * 5 4 3 32 32 H 1.09003 * 109.50185 * 60.76156 * 5 4 3 33 33 H 1.09004 * 109.52153 * 297.68838 * 6 5 4 34 34 H 1.09000 * 109.47599 * 55.74623 * 7 6 5 35 35 H 1.09010 * 109.46779 * 295.74838 * 7 6 5 36 36 H 1.08998 * 110.41134 * 82.18157 * 9 8 7 37 37 H 1.08999 * 110.51186 * 319.79212 * 9 8 7 38 38 H 1.09001 * 110.32046 * 264.95894 * 10 9 8 39 39 H 1.08998 * 110.40983 * 142.79103 * 10 9 8 40 40 H 0.96698 * 113.99758 * 62.82340 * 12 11 10 41 41 H 0.96998 * 119.99998 * 180.02562 * 16 15 13 42 42 H 1.09008 * 110.38922 * 40.24287 * 21 8 7 43 43 H 1.08999 * 110.50901 * 277.74770 * 21 8 7 44 44 H 1.09001 * 109.50260 * 62.32189 * 22 6 5 45 45 H 1.09001 * 109.49900 * 182.43893 * 22 6 5 46 46 H 1.09000 * 109.46312 * 294.17248 * 23 3 2 47 47 H 1.08996 * 109.46107 * 54.15564 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4680 1.4311 -0.2381 5 6 3.9655 2.8705 -0.0872 6 6 3.2355 3.7657 -1.0922 7 6 3.6842 5.2163 -0.9051 8 7 3.0610 6.0584 -1.9349 9 6 3.5570 5.6990 -3.2884 10 6 3.2702 6.9463 -4.1517 11 6 3.2022 8.1189 -3.1517 12 8 4.2161 9.0819 -3.4462 13 6 1.8409 8.7641 -3.1934 14 1 1.2111 8.7532 -2.3162 15 6 1.3997 9.3685 -4.3515 16 7 2.1666 9.3815 -5.4198 17 14 -0.2874 10.1689 -4.4030 18 1 -0.1721 11.5931 -3.9984 19 1 -0.8314 10.0887 -5.7824 20 1 -1.1997 9.4613 -3.4691 21 6 3.4521 7.4834 -1.7671 22 6 1.7262 3.6623 -0.8556 23 6 1.2938 2.1997 -0.9827 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6817 1.0767 -1.2464 30 1 3.9755 0.7937 0.4860 31 1 5.0378 2.9069 -0.2792 32 1 3.7644 3.2208 0.9252 33 1 3.4683 3.4403 -2.1062 34 1 4.7689 5.2756 -0.9947 35 1 3.3816 5.5658 0.0821 36 1 3.0149 4.8362 -3.6752 37 1 4.6271 5.4936 -3.2609 38 1 2.3184 6.8363 -4.6714 39 1 4.0759 7.1061 -4.8682 40 1 4.1229 9.4984 -4.3139 41 1 1.8563 9.8070 -6.2344 42 1 4.5059 7.5590 -1.4988 43 1 2.8310 7.9634 -1.0109 44 1 1.4889 4.0254 0.1444 45 1 1.1997 4.2641 -1.5964 46 1 1.5178 1.8419 -1.9876 47 1 0.2223 2.1207 -0.7995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659528064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:43 Heat of formation + Delta-G solvation = -51.557717 kcal Electronic energy + Delta-G solvation = -23524.300958 eV Core-core repulsion = 20320.231133 eV Total energy + Delta-G solvation = -3204.069825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45821 -38.14542 -35.56815 -33.90671 -32.03470 -31.14447 -30.43592 -28.97112 -27.87819 -25.87667 -24.21673 -23.43920 -22.34233 -21.13385 -20.15772 -19.58858 -19.01404 -16.98118 -16.20905 -15.34407 -15.26289 -14.94568 -14.77077 -14.57960 -14.03899 -13.89509 -13.75764 -13.36202 -13.07424 -12.88624 -12.43981 -12.17715 -11.99064 -11.85477 -11.68875 -11.44305 -11.41617 -11.17469 -11.09311 -11.08328 -10.89803 -10.49351 -10.47873 -10.28718 -10.23059 -10.10820 -10.06420 -9.79682 -8.98494 -8.52178 -8.36249 -8.07214 -7.73538 -6.12461 -4.17573 3.28651 3.35388 3.40168 3.82913 4.38776 4.52519 4.77209 4.88557 4.91477 5.01892 5.11181 5.19246 5.27810 5.30456 5.42795 5.49751 5.55525 5.62922 5.72331 5.75286 5.80715 5.83800 5.84663 5.91765 5.97609 6.05617 6.12939 6.13825 6.22553 6.24498 6.28799 6.46126 6.52953 6.59262 6.66648 6.92299 7.04195 7.08591 7.12342 7.27982 7.61256 7.72541 7.79073 7.91538 8.26880 8.85012 9.47835 9.57541 10.95159 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.003966 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.495729 B = 7058.115661 C = 7826.513212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.111 4.111 6 C -0.082 4.082 7 C 0.051 3.949 8 N -0.497 5.497 9 C 0.034 3.966 10 C -0.121 4.121 11 C 0.249 3.751 12 O -0.596 6.596 13 C -0.517 4.517 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.902 5.902 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.053 3.947 22 C -0.102 4.102 23 C 0.048 3.952 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.265 0.735 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.028 0.972 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 -16.184 7.934 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.069 4.069 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.078 4.078 8 N -0.221 5.221 9 C -0.094 4.094 10 C -0.160 4.160 11 C 0.209 3.791 12 O -0.406 6.406 13 C -0.555 4.555 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.075 4.075 22 C -0.140 4.140 23 C -0.079 4.079 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.234 0.766 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.047 0.953 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.414 -16.177 8.861 18.449 hybrid contribution -0.007 0.238 -1.603 1.621 sum 0.407 -15.939 7.257 17.518 Atomic orbital electron populations 1.21947 0.95083 1.01653 1.02760 1.22056 0.95779 0.89521 1.00346 1.62044 1.03905 1.10047 1.50450 1.22038 0.88080 0.97580 0.99167 1.21617 0.98975 0.93932 1.00415 1.21162 0.95942 0.94223 0.98767 1.22280 0.95867 0.92926 0.96733 1.65322 1.53017 1.02467 1.01312 1.23108 0.96163 0.99406 0.90694 1.22847 1.01342 0.94054 0.97709 1.19263 0.86629 0.85333 0.87877 1.86076 1.53229 1.59251 1.41998 1.21665 1.00827 1.35126 0.97881 0.91962 1.25005 0.97667 0.95619 0.95291 1.69662 1.37371 1.44927 1.02336 0.86489 0.84009 0.79673 0.77204 1.20657 1.21268 1.19754 1.23005 0.97198 0.87712 0.99539 1.21533 0.95254 0.94168 1.03005 1.22289 0.98696 0.94282 0.92626 0.91712 0.92142 0.92432 0.95301 0.91007 0.95200 0.91184 0.91869 0.91067 0.91681 0.95555 0.91181 0.91852 0.95632 0.90823 0.93246 0.76641 0.92511 0.95297 0.90601 0.91539 0.89812 0.95347 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.16 37.16 0.34 -0.99 16 2 C 0.05 0.48 5.99 -3.83 -0.02 0.45 16 3 N -0.54 -6.07 4.81 -234.67 -1.13 -7.20 16 4 C 0.06 0.63 5.42 -3.83 -0.02 0.61 16 5 C -0.11 -1.27 5.38 -26.65 -0.14 -1.41 16 6 C -0.08 -1.11 2.20 -90.50 -0.20 -1.31 16 7 C 0.05 0.80 4.23 -3.83 -0.02 0.78 16 8 N -0.50 -9.64 4.88 -229.83 -1.12 -10.76 16 9 C 0.03 0.67 5.58 -2.18 -0.01 0.66 16 10 C -0.12 -2.84 5.60 -25.35 -0.14 -2.98 16 11 C 0.25 6.29 1.06 -90.39 -0.10 6.19 16 12 O -0.60 -15.86 12.94 -35.23 -0.46 -16.31 16 13 C -0.52 -14.08 8.08 -34.44 -0.28 -14.36 16 14 H 0.06 1.71 7.54 -52.49 -0.40 1.32 16 15 C 0.06 1.75 5.04 -17.82 -0.09 1.66 16 16 N -0.90 -24.45 10.83 55.43 0.60 -23.85 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.05 1.17 5.79 -2.09 -0.01 1.16 16 22 C -0.10 -1.39 5.23 -26.65 -0.14 -1.53 16 23 C 0.05 0.58 4.85 -3.83 -0.02 0.56 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.53 6.21 -51.93 -0.32 0.21 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.94 6.91 -51.93 -0.36 0.58 16 34 H 0.03 0.42 7.97 -51.93 -0.41 0.00 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 36 H 0.06 1.16 7.60 -51.93 -0.39 0.77 16 37 H 0.03 0.48 7.89 -51.93 -0.41 0.07 16 38 H 0.07 1.88 7.33 -51.93 -0.38 1.50 16 39 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 40 H 0.38 10.30 7.19 45.56 0.33 10.62 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.03 0.63 7.93 -51.92 -0.41 0.22 16 43 H 0.08 1.69 7.68 -51.93 -0.40 1.29 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.31 7.82 -51.93 -0.41 0.91 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.90 5.81 -51.93 -0.30 0.59 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -27.48 351.56 -10.74 -38.22 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.06 Total: 9.05 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.85 Total: -10.50 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -1.65 Total: -41.81 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.46 Total: -16.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.48 -10.74 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659528064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.336 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds