Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47105 * 2 1 4 4 C 1.46854 * 111.00010 * 190.00002 * 3 2 1 5 5 C 1.53038 * 109.52155 * 185.83694 * 4 3 2 6 6 C 1.53113 * 109.28173 * 300.82021 * 5 4 3 7 7 C 1.52996 * 109.52547 * 177.56174 * 6 5 4 8 8 N 1.46898 * 109.47279 * 175.75164 * 7 6 5 9 9 C 1.48560 * 111.00053 * 294.30941 * 8 7 6 10 10 C 1.54380 * 104.59715 * 200.96124 * 9 8 7 11 11 C 1.54260 * 105.06028 * 23.84987 * 10 9 8 12 12 O 1.42902 * 110.32368 * 118.89796 * 11 10 9 13 13 C 1.50700 * 110.32439 * 241.00517 * 11 10 9 14 14 H 1.07994 * 119.99846 * 117.17536 * 13 11 10 15 15 C 1.37878 * 119.99562 * 297.16879 * 13 11 10 16 16 N 1.31510 * 120.00511 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46932 * 90.00043 * 17 15 13 19 19 H 1.48497 * 109.47245 * 210.00203 * 17 15 13 20 20 H 1.48503 * 109.47000 * 330.00587 * 17 15 13 21 21 C 1.48720 * 111.01645 * 178.79951 * 8 7 6 22 22 C 1.53123 * 109.21092 * 57.62142 * 6 5 4 23 23 C 1.46847 * 110.99923 * 314.20733 * 3 2 1 24 24 H 1.08996 * 109.47263 * 300.00088 * 1 2 3 25 25 H 1.09002 * 109.46998 * 60.00294 * 1 2 3 26 26 H 1.09007 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47263 * 239.99912 * 2 1 3 28 28 H 1.09002 * 109.46998 * 119.99706 * 2 1 3 29 29 H 1.08996 * 109.45903 * 65.82122 * 4 3 2 30 30 H 1.09000 * 109.45876 * 305.85167 * 4 3 2 31 31 H 1.08996 * 109.50300 * 180.87610 * 5 4 3 32 32 H 1.09003 * 109.50185 * 60.76156 * 5 4 3 33 33 H 1.09004 * 109.52153 * 297.68838 * 6 5 4 34 34 H 1.09000 * 109.47599 * 55.74623 * 7 6 5 35 35 H 1.09010 * 109.46779 * 295.74838 * 7 6 5 36 36 H 1.08998 * 110.41134 * 82.18157 * 9 8 7 37 37 H 1.08999 * 110.51186 * 319.79212 * 9 8 7 38 38 H 1.09001 * 110.32046 * 264.95894 * 10 9 8 39 39 H 1.08998 * 110.40983 * 142.79103 * 10 9 8 40 40 H 0.96698 * 113.99758 * 62.82340 * 12 11 10 41 41 H 0.96998 * 119.99998 * 180.02562 * 16 15 13 42 42 H 1.09008 * 110.38922 * 40.24287 * 21 8 7 43 43 H 1.08999 * 110.50901 * 277.74770 * 21 8 7 44 44 H 1.09001 * 109.50260 * 62.32189 * 22 6 5 45 45 H 1.09001 * 109.49900 * 182.43893 * 22 6 5 46 46 H 1.09000 * 109.46312 * 294.17248 * 23 3 2 47 47 H 1.08996 * 109.46107 * 54.15564 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4680 1.4311 -0.2381 5 6 3.9655 2.8705 -0.0872 6 6 3.2355 3.7657 -1.0922 7 6 3.6842 5.2163 -0.9051 8 7 3.0610 6.0584 -1.9349 9 6 3.5570 5.6990 -3.2884 10 6 3.2702 6.9463 -4.1517 11 6 3.2022 8.1189 -3.1517 12 8 4.2161 9.0819 -3.4462 13 6 1.8409 8.7641 -3.1934 14 1 1.2111 8.7532 -2.3162 15 6 1.3997 9.3685 -4.3515 16 7 2.1666 9.3815 -5.4198 17 14 -0.2874 10.1689 -4.4030 18 1 -0.1721 11.5931 -3.9984 19 1 -0.8314 10.0887 -5.7824 20 1 -1.1997 9.4613 -3.4691 21 6 3.4521 7.4834 -1.7671 22 6 1.7262 3.6623 -0.8556 23 6 1.2938 2.1997 -0.9827 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6817 1.0767 -1.2464 30 1 3.9755 0.7937 0.4860 31 1 5.0378 2.9069 -0.2792 32 1 3.7644 3.2208 0.9252 33 1 3.4683 3.4403 -2.1062 34 1 4.7689 5.2756 -0.9947 35 1 3.3816 5.5658 0.0821 36 1 3.0149 4.8362 -3.6752 37 1 4.6271 5.4936 -3.2609 38 1 2.3184 6.8363 -4.6714 39 1 4.0759 7.1061 -4.8682 40 1 4.1229 9.4984 -4.3139 41 1 1.8563 9.8070 -6.2344 42 1 4.5059 7.5590 -1.4988 43 1 2.8310 7.9634 -1.0109 44 1 1.4889 4.0254 0.1444 45 1 1.1997 4.2641 -1.5964 46 1 1.5178 1.8419 -1.9876 47 1 0.2223 2.1207 -0.7995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659528064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = -70.622082 kcal Electronic energy + Delta-G solvation = -23525.127651 eV Core-core repulsion = 20320.231133 eV Total energy + Delta-G solvation = -3204.896518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61613 -39.64311 -37.09045 -35.25414 -34.12961 -32.21380 -31.57316 -30.27729 -29.67094 -27.32506 -25.88936 -24.45076 -23.51096 -22.21073 -21.43832 -21.30221 -20.31470 -19.03773 -17.09799 -17.00248 -16.85838 -16.38451 -15.98669 -15.73692 -15.56604 -15.25529 -15.00244 -14.58843 -14.27083 -14.17494 -13.95674 -13.70192 -13.39009 -13.23875 -13.02512 -12.86444 -12.67795 -12.52841 -12.37185 -12.34511 -12.26450 -12.06915 -12.02475 -11.92797 -11.87786 -11.43325 -11.18085 -11.03084 -10.89479 -10.58140 -10.11381 -9.29257 -9.20941 -8.18216 -6.30696 1.41411 1.43168 1.53288 2.41782 2.97202 3.00679 3.17553 3.76621 3.90620 3.94030 4.02363 4.17603 4.22867 4.28678 4.33595 4.36520 4.45047 4.49917 4.53530 4.60016 4.61303 4.63591 4.67220 4.79857 4.83647 4.91853 4.94564 4.98935 5.00624 5.06166 5.12896 5.14535 5.25687 5.29208 5.33608 5.38341 5.45413 5.56105 5.66542 5.78870 6.00935 6.18730 6.20182 6.23187 6.31186 6.74105 7.37746 7.46184 8.87850 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.003966 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.495729 B = 7058.115661 C = 7826.513212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 N -0.548 5.548 4 C 0.060 3.940 5 C -0.105 4.105 6 C -0.075 4.075 7 C 0.052 3.948 8 N -0.502 5.502 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.231 3.769 12 O -0.604 6.604 13 C -0.541 4.541 14 H 0.051 0.949 15 C 0.025 3.975 16 N -0.917 5.917 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.061 3.939 22 C -0.098 4.098 23 C 0.055 3.945 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.377 0.623 41 H 0.268 0.732 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.023 0.977 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -17.833 8.816 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 N -0.274 5.274 4 C -0.068 4.068 5 C -0.143 4.143 6 C -0.094 4.094 7 C -0.076 4.076 8 N -0.226 5.226 9 C -0.082 4.082 10 C -0.152 4.152 11 C 0.192 3.808 12 O -0.413 6.413 13 C -0.579 4.579 14 H 0.070 0.930 15 C -0.174 4.174 16 N -0.558 5.558 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.067 4.067 22 C -0.136 4.136 23 C -0.073 4.073 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.227 0.773 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.319 -17.842 9.754 20.337 hybrid contribution 0.034 0.751 -1.869 2.014 sum 0.353 -17.092 7.885 18.826 Atomic orbital electron populations 1.21924 0.94548 1.02547 1.02165 1.22132 0.96268 0.88438 1.00947 1.62058 1.04225 1.11102 1.49976 1.22066 0.87870 0.97215 0.99650 1.21567 0.99390 0.93875 0.99466 1.21105 0.96009 0.93076 0.99225 1.22370 0.96023 0.93550 0.95656 1.65303 1.53791 1.01439 1.02097 1.22988 0.97188 0.97895 0.90103 1.22635 0.99470 0.95514 0.97577 1.19539 0.85728 0.85505 0.90035 1.86069 1.53768 1.59802 1.41663 1.21865 1.01876 1.36276 0.97865 0.93029 1.25666 1.00835 0.95948 0.94944 1.69740 1.38511 1.44956 1.02558 0.85568 0.80117 0.78697 0.77285 1.20293 1.20622 1.19703 1.22835 0.97152 0.89247 0.97480 1.21435 0.95224 0.95106 1.01788 1.22170 0.99152 0.93248 0.92690 0.92197 0.92787 0.90854 0.95095 0.89903 0.95352 0.89458 0.90650 0.91095 0.92292 0.94929 0.90728 0.90315 0.94303 0.93508 0.94229 0.77285 0.92316 0.95045 0.91304 0.92079 0.92223 0.95832 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.16 71.98 0.66 -1.65 16 2 C 0.05 0.81 5.99 86.30 0.52 1.33 16 3 N -0.55 -11.16 4.81 -896.36 -4.31 -15.47 16 4 C 0.06 1.12 5.42 86.32 0.47 1.59 16 5 C -0.10 -2.13 5.38 30.64 0.16 -1.96 16 6 C -0.08 -1.91 2.20 -10.72 -0.02 -1.94 16 7 C 0.05 1.57 4.23 86.30 0.37 1.93 16 8 N -0.50 -19.16 4.88 -881.03 -4.30 -23.47 16 9 C 0.05 1.77 5.58 86.45 0.48 2.26 16 10 C -0.11 -5.39 5.60 31.49 0.18 -5.21 16 11 C 0.23 11.86 1.06 -10.64 -0.01 11.85 16 12 O -0.60 -32.68 12.94 -148.98 -1.93 -34.61 16 13 C -0.54 -29.95 8.08 25.60 0.21 -29.75 16 14 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 15 C 0.03 1.38 5.04 84.66 0.43 1.80 16 16 N -0.92 -50.22 10.83 21.45 0.23 -49.99 16 17 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C 0.06 2.70 5.79 86.42 0.50 3.20 16 22 C -0.10 -2.58 5.23 30.65 0.16 -2.42 16 23 C 0.06 1.25 4.85 86.33 0.42 1.67 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.87 6.21 -2.39 -0.01 0.86 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.03 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.59 6.91 -2.38 -0.02 1.57 16 34 H 0.03 0.96 7.97 -2.39 -0.02 0.94 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 36 H 0.08 2.80 7.60 -2.39 -0.02 2.78 16 37 H 0.04 1.40 7.89 -2.39 -0.02 1.38 16 38 H 0.05 2.44 7.33 -2.39 -0.02 2.42 16 39 H 0.04 1.91 7.98 -2.39 -0.02 1.89 16 40 H 0.38 20.80 7.19 -74.06 -0.53 20.27 16 41 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.03 1.36 7.93 -2.38 -0.02 1.34 16 43 H 0.07 3.10 7.68 -2.39 -0.02 3.08 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.86 7.82 -2.39 -0.02 1.84 16 46 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 1.81 5.81 -2.39 -0.01 1.79 16 Total: -1.00 -58.23 351.56 -3.38 -61.61 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.39 Total: 33.81 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.51 Total: -17.32 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -8.38 Total: -88.92 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.93 Total: -34.61 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -58.23 -3.38 -61.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659528064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.014 kcal (2) G-P(sol) polarization free energy of solvation -58.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds