Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47005 * 2 1 4 4 C 1.46847 * 111.00230 * 294.20979 * 3 2 1 5 5 C 1.53034 * 109.52739 * 174.15827 * 4 3 2 6 6 C 1.53124 * 109.27646 * 59.18159 * 5 4 3 7 7 C 1.52995 * 109.52140 * 182.44148 * 6 5 4 8 8 N 1.46893 * 109.47574 * 294.59698 * 7 6 5 9 9 C 1.47904 * 110.99882 * 294.25826 * 8 7 6 10 10 C 1.53998 * 107.05744 * 214.15483 * 9 8 7 11 11 C 1.54597 * 105.13965 * 1.21827 * 10 9 8 12 12 O 1.42895 * 110.72867 * 263.42502 * 11 10 9 13 13 C 1.50704 * 110.72305 * 140.31731 * 11 10 9 14 14 H 1.08002 * 119.99571 * 242.11681 * 13 11 10 15 15 C 1.37868 * 119.99785 * 62.11610 * 13 11 10 16 16 N 1.31513 * 120.00397 * 354.09942 * 15 13 11 17 17 Si 1.86803 * 119.99923 * 174.10214 * 15 13 11 18 18 H 1.48504 * 109.47435 * 94.97689 * 17 15 13 19 19 H 1.48504 * 109.47181 * 214.97845 * 17 15 13 20 20 H 1.48497 * 109.47080 * 334.97421 * 17 15 13 21 21 C 1.48538 * 111.00494 * 176.85682 * 8 7 6 22 22 C 1.53125 * 109.15813 * 302.34822 * 6 5 4 23 23 C 1.46850 * 111.00136 * 170.00274 * 3 2 1 24 24 H 1.08994 * 109.47021 * 60.00192 * 1 2 3 25 25 H 1.09005 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99619 * 1 2 3 27 27 H 1.09008 * 109.47104 * 240.00410 * 2 1 3 28 28 H 1.09001 * 109.47464 * 120.00330 * 2 1 3 29 29 H 1.08994 * 109.46480 * 294.18258 * 4 3 2 30 30 H 1.09003 * 109.45978 * 54.14412 * 4 3 2 31 31 H 1.09005 * 109.50198 * 299.24241 * 5 4 3 32 32 H 1.08997 * 109.50962 * 179.12469 * 5 4 3 33 33 H 1.09000 * 109.57177 * 62.28168 * 6 5 4 34 34 H 1.09002 * 109.47256 * 54.60091 * 7 6 5 35 35 H 1.09002 * 109.46963 * 174.59363 * 7 6 5 36 36 H 1.09001 * 109.91852 * 333.50458 * 9 8 7 37 37 H 1.09003 * 109.92101 * 94.60529 * 9 8 7 38 38 H 1.08992 * 110.31213 * 120.13795 * 10 9 8 39 39 H 1.08999 * 110.30470 * 242.31161 * 10 9 8 40 40 H 0.96696 * 113.99806 * 298.54478 * 12 11 10 41 41 H 0.96997 * 120.00483 * 179.97438 * 16 15 13 42 42 H 1.08991 * 110.66777 * 278.15891 * 21 8 7 43 43 H 1.09003 * 110.66322 * 41.28817 * 21 8 7 44 44 H 1.08994 * 109.50447 * 297.71129 * 22 6 5 45 45 H 1.09007 * 109.52946 * 177.61379 * 22 6 5 46 46 H 1.08997 * 109.46060 * 305.85312 * 23 3 2 47 47 H 1.09000 * 109.46224 * 65.83401 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 -1.2503 5 6 2.0606 3.5440 -1.1567 6 6 3.5675 3.6484 -0.9057 7 6 3.9592 5.1191 -0.7505 8 7 3.7363 5.8220 -2.0209 9 6 4.6464 5.3181 -3.0723 10 6 5.0006 6.5146 -3.9747 11 6 4.2635 7.7223 -3.3517 12 8 3.0183 7.9515 -4.0142 13 6 5.1264 8.9569 -3.4007 14 1 5.4321 9.4387 -2.4837 15 6 5.5256 9.4711 -4.6160 16 7 5.2524 8.8218 -5.7265 17 14 6.4548 11.0902 -4.6852 18 1 7.9150 10.8220 -4.7192 19 1 6.0599 11.8356 -5.9074 20 1 6.1281 11.9001 -3.4843 21 6 4.0349 7.2710 -1.8873 22 6 3.9174 2.8875 0.3762 23 6 3.4680 1.4312 0.2380 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1941 1.6028 -2.0816 30 1 0.5903 1.9905 -1.4147 31 1 1.5213 4.0138 -0.3341 32 1 1.8114 4.0476 -2.0906 33 1 4.1086 3.2140 -1.7464 34 1 3.3509 5.5768 0.0296 35 1 5.0122 5.1877 -0.4772 36 1 5.5515 4.9149 -2.6180 37 1 4.1474 4.5442 -3.6557 38 1 6.0770 6.6855 -3.9712 39 1 4.6478 6.3394 -4.9910 40 1 3.1057 8.1623 -4.9538 41 1 5.5330 9.1837 -6.5816 42 1 3.1882 7.7994 -1.4495 43 1 4.9351 7.4249 -1.2923 44 1 3.4074 3.3469 1.2228 45 1 4.9948 2.9221 0.5379 46 1 3.7028 0.8902 1.1546 47 1 3.9887 0.9685 -0.6004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659528065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = -55.302492 kcal Electronic energy + Delta-G solvation = -23395.612747 eV Core-core repulsion = 20191.380536 eV Total energy + Delta-G solvation = -3204.232211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.42554 -38.11780 -35.49228 -33.81648 -32.10104 -31.05546 -30.54433 -29.00878 -27.95872 -25.92975 -24.16277 -23.31884 -22.36225 -21.22842 -20.08918 -19.63887 -19.01788 -16.95500 -16.14742 -15.43399 -15.19103 -14.99185 -14.71536 -14.42517 -14.23455 -13.81829 -13.69920 -13.33515 -13.24134 -12.71590 -12.54684 -12.21372 -12.01099 -11.90636 -11.71280 -11.42755 -11.31454 -11.23489 -11.11813 -10.99301 -10.96227 -10.67526 -10.43819 -10.32665 -10.26423 -10.10422 -10.02246 -9.70962 -9.05719 -8.59751 -8.39028 -8.04257 -7.62656 -6.17740 -4.25667 3.22748 3.30891 3.35502 3.81169 4.31376 4.60149 4.76807 4.87083 4.93058 5.05380 5.08954 5.16911 5.30366 5.31023 5.43579 5.49234 5.55948 5.62461 5.73287 5.74273 5.81202 5.81899 5.83833 5.92616 6.01278 6.02804 6.11412 6.14953 6.15679 6.24615 6.31817 6.51763 6.52562 6.65290 6.67812 6.95565 7.03951 7.07387 7.11674 7.44990 7.57744 7.63050 7.80780 7.86474 8.23294 8.76602 9.43175 9.54932 10.88515 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.003296 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.764079 B = 8493.777654 C = 8704.089970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.052 3.948 5 C -0.100 4.100 6 C -0.082 4.082 7 C 0.052 3.948 8 N -0.511 5.511 9 C 0.038 3.962 10 C -0.127 4.127 11 C 0.256 3.744 12 O -0.579 6.579 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.053 3.947 22 C -0.111 4.111 23 C 0.059 3.941 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.374 0.626 41 H 0.265 0.735 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 -15.262 9.270 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.075 4.075 5 C -0.138 4.138 6 C -0.101 4.101 7 C -0.076 4.076 8 N -0.234 5.234 9 C -0.090 4.090 10 C -0.165 4.165 11 C 0.216 3.784 12 O -0.386 6.386 13 C -0.576 4.576 14 H 0.078 0.922 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.074 4.074 22 C -0.150 4.150 23 C -0.069 4.069 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.223 0.777 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.168 -15.228 9.927 18.898 hybrid contribution 2.199 0.578 -1.128 2.538 sum -2.969 -14.649 8.799 17.345 Atomic orbital electron populations 1.21806 0.94939 1.01277 1.02661 1.22045 0.96143 0.89239 1.00349 1.61995 1.13761 1.14932 1.35758 1.22212 1.00564 0.95457 0.89275 1.21510 0.95060 0.93983 1.03259 1.21168 0.96919 0.94920 0.97074 1.22273 0.98351 0.93758 0.93261 1.64731 1.50240 1.03657 1.04792 1.22899 0.93189 0.98727 0.94200 1.22910 1.00841 0.94265 0.98531 1.19321 0.81659 0.91062 0.86377 1.86152 1.32230 1.92889 1.27304 1.21613 1.31546 1.11573 0.92873 0.92219 1.24995 0.95231 0.97314 0.95614 1.69810 1.47270 1.38169 0.97916 0.86508 0.79645 0.83617 0.77785 1.20756 1.20989 1.19745 1.23154 0.98687 0.86872 0.98668 1.21624 1.00273 0.94409 0.98674 1.22038 0.87407 0.97390 1.00049 0.92502 0.92564 0.91854 0.95270 0.91132 0.95303 0.90736 0.91577 0.89976 0.91691 0.91325 0.95515 0.95645 0.92236 0.92190 0.91604 0.77747 0.92495 0.91060 0.93886 0.91094 0.91848 0.91170 0.95223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.84 37.16 0.37 -0.88 16 2 C 0.05 0.47 5.68 -3.82 -0.02 0.44 16 3 N -0.54 -6.01 4.66 -234.67 -1.09 -7.10 16 4 C 0.05 0.62 5.29 -3.84 -0.02 0.60 16 5 C -0.10 -1.36 5.24 -26.65 -0.14 -1.50 16 6 C -0.08 -1.11 2.21 -90.49 -0.20 -1.31 16 7 C 0.05 0.83 4.13 -3.83 -0.02 0.81 16 8 N -0.51 -9.90 4.82 -230.45 -1.11 -11.01 16 9 C 0.04 0.75 5.53 -2.75 -0.02 0.73 16 10 C -0.13 -2.97 5.17 -25.37 -0.13 -3.10 16 11 C 0.26 6.42 0.95 -89.91 -0.09 6.34 16 12 O -0.58 -15.30 13.09 -35.23 -0.46 -15.76 16 13 C -0.54 -14.51 8.13 -34.44 -0.28 -14.79 16 14 H 0.06 1.60 7.79 -52.49 -0.41 1.20 16 15 C 0.07 1.89 5.27 -17.82 -0.09 1.79 16 16 N -0.89 -23.98 11.03 55.43 0.61 -23.37 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.05 1.18 5.70 -1.89 -0.01 1.17 16 22 C -0.11 -1.28 5.38 -26.65 -0.14 -1.42 16 23 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 24 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.27 8.12 -51.92 -0.42 -0.15 16 28 H 0.07 0.59 7.99 -51.93 -0.41 0.18 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.27 7.84 -51.93 -0.41 0.87 16 33 H 0.06 0.95 7.19 -51.93 -0.37 0.58 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.43 7.94 -51.93 -0.41 0.01 16 36 H 0.03 0.47 7.64 -51.93 -0.40 0.08 16 37 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 38 H 0.06 1.48 7.84 -51.93 -0.41 1.07 16 39 H 0.07 1.62 7.94 -51.93 -0.41 1.21 16 40 H 0.37 9.93 7.63 45.56 0.35 10.28 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.04 0.93 7.92 -51.93 -0.41 0.51 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -27.26 354.60 -10.69 -37.95 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.15 Total: 8.71 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.81 Total: -10.50 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -1.59 Total: -41.48 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.46 Total: -15.76 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.26 -10.69 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659528065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.351 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds