Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47005 * 2 1 4 4 C 1.46847 * 111.00230 * 294.20979 * 3 2 1 5 5 C 1.53034 * 109.52739 * 174.15827 * 4 3 2 6 6 C 1.53124 * 109.27646 * 59.18159 * 5 4 3 7 7 C 1.52995 * 109.52140 * 182.44148 * 6 5 4 8 8 N 1.46893 * 109.47574 * 294.59698 * 7 6 5 9 9 C 1.47904 * 110.99882 * 294.25826 * 8 7 6 10 10 C 1.53998 * 107.05744 * 214.15483 * 9 8 7 11 11 C 1.54597 * 105.13965 * 1.21827 * 10 9 8 12 12 O 1.42895 * 110.72867 * 263.42502 * 11 10 9 13 13 C 1.50704 * 110.72305 * 140.31731 * 11 10 9 14 14 H 1.08002 * 119.99571 * 242.11681 * 13 11 10 15 15 C 1.37868 * 119.99785 * 62.11610 * 13 11 10 16 16 N 1.31513 * 120.00397 * 354.09942 * 15 13 11 17 17 Si 1.86803 * 119.99923 * 174.10214 * 15 13 11 18 18 H 1.48504 * 109.47435 * 94.97689 * 17 15 13 19 19 H 1.48504 * 109.47181 * 214.97845 * 17 15 13 20 20 H 1.48497 * 109.47080 * 334.97421 * 17 15 13 21 21 C 1.48538 * 111.00494 * 176.85682 * 8 7 6 22 22 C 1.53125 * 109.15813 * 302.34822 * 6 5 4 23 23 C 1.46850 * 111.00136 * 170.00274 * 3 2 1 24 24 H 1.08994 * 109.47021 * 60.00192 * 1 2 3 25 25 H 1.09005 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99619 * 1 2 3 27 27 H 1.09008 * 109.47104 * 240.00410 * 2 1 3 28 28 H 1.09001 * 109.47464 * 120.00330 * 2 1 3 29 29 H 1.08994 * 109.46480 * 294.18258 * 4 3 2 30 30 H 1.09003 * 109.45978 * 54.14412 * 4 3 2 31 31 H 1.09005 * 109.50198 * 299.24241 * 5 4 3 32 32 H 1.08997 * 109.50962 * 179.12469 * 5 4 3 33 33 H 1.09000 * 109.57177 * 62.28168 * 6 5 4 34 34 H 1.09002 * 109.47256 * 54.60091 * 7 6 5 35 35 H 1.09002 * 109.46963 * 174.59363 * 7 6 5 36 36 H 1.09001 * 109.91852 * 333.50458 * 9 8 7 37 37 H 1.09003 * 109.92101 * 94.60529 * 9 8 7 38 38 H 1.08992 * 110.31213 * 120.13795 * 10 9 8 39 39 H 1.08999 * 110.30470 * 242.31161 * 10 9 8 40 40 H 0.96696 * 113.99806 * 298.54478 * 12 11 10 41 41 H 0.96997 * 120.00483 * 179.97438 * 16 15 13 42 42 H 1.08991 * 110.66777 * 278.15891 * 21 8 7 43 43 H 1.09003 * 110.66322 * 41.28817 * 21 8 7 44 44 H 1.08994 * 109.50447 * 297.71129 * 22 6 5 45 45 H 1.09007 * 109.52946 * 177.61379 * 22 6 5 46 46 H 1.08997 * 109.46060 * 305.85312 * 23 3 2 47 47 H 1.09000 * 109.46224 * 65.83401 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 -1.2503 5 6 2.0606 3.5440 -1.1567 6 6 3.5675 3.6484 -0.9057 7 6 3.9592 5.1191 -0.7505 8 7 3.7363 5.8220 -2.0209 9 6 4.6464 5.3181 -3.0723 10 6 5.0006 6.5146 -3.9747 11 6 4.2635 7.7223 -3.3517 12 8 3.0183 7.9515 -4.0142 13 6 5.1264 8.9569 -3.4007 14 1 5.4321 9.4387 -2.4837 15 6 5.5256 9.4711 -4.6160 16 7 5.2524 8.8218 -5.7265 17 14 6.4548 11.0902 -4.6852 18 1 7.9150 10.8220 -4.7192 19 1 6.0599 11.8356 -5.9074 20 1 6.1281 11.9001 -3.4843 21 6 4.0349 7.2710 -1.8873 22 6 3.9174 2.8875 0.3762 23 6 3.4680 1.4312 0.2380 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1941 1.6028 -2.0816 30 1 0.5903 1.9905 -1.4147 31 1 1.5213 4.0138 -0.3341 32 1 1.8114 4.0476 -2.0906 33 1 4.1086 3.2140 -1.7464 34 1 3.3509 5.5768 0.0296 35 1 5.0122 5.1877 -0.4772 36 1 5.5515 4.9149 -2.6180 37 1 4.1474 4.5442 -3.6557 38 1 6.0770 6.6855 -3.9712 39 1 4.6478 6.3394 -4.9910 40 1 3.1057 8.1623 -4.9538 41 1 5.5330 9.1837 -6.5816 42 1 3.1882 7.7994 -1.4495 43 1 4.9351 7.4249 -1.2923 44 1 3.4074 3.3469 1.2228 45 1 4.9948 2.9221 0.5379 46 1 3.7028 0.8902 1.1546 47 1 3.9887 0.9685 -0.6004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659528065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = -73.988753 kcal Electronic energy + Delta-G solvation = -23396.423044 eV Core-core repulsion = 20191.380536 eV Total energy + Delta-G solvation = -3205.042508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59673 -39.59948 -36.99317 -35.16920 -34.17597 -32.14921 -31.62225 -30.34081 -29.76964 -27.37528 -25.81946 -24.29721 -23.50864 -22.23690 -21.43361 -21.38441 -20.31709 -18.97085 -17.12066 -17.01815 -16.84263 -16.27410 -16.05933 -15.82527 -15.35971 -15.24559 -14.94001 -14.58363 -14.47422 -14.08714 -13.93422 -13.72494 -13.34842 -13.21879 -13.01769 -12.82544 -12.66989 -12.55955 -12.49211 -12.44296 -12.26811 -12.11839 -12.06220 -11.88377 -11.63234 -11.43128 -11.23872 -11.06488 -10.92304 -10.61844 -10.06575 -9.24180 -9.19266 -8.20771 -6.36414 1.38740 1.42114 1.52073 2.38152 2.99312 3.03200 3.17025 3.77277 3.88685 3.92190 4.02919 4.12111 4.21156 4.26529 4.33474 4.39409 4.46974 4.49072 4.53779 4.62548 4.63826 4.65982 4.76253 4.80303 4.86678 4.90988 4.93381 4.97713 5.01858 5.10600 5.13248 5.17047 5.22506 5.29526 5.38391 5.44790 5.49410 5.55836 5.59758 5.77654 5.94057 6.18911 6.21718 6.24006 6.34755 6.69233 7.35371 7.45500 8.83978 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.003296 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.764079 B = 8493.777654 C = 8704.089970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.547 5.547 4 C 0.059 3.941 5 C -0.095 4.095 6 C -0.075 4.075 7 C 0.053 3.947 8 N -0.514 5.514 9 C 0.049 3.951 10 C -0.117 4.117 11 C 0.239 3.761 12 O -0.587 6.587 13 C -0.563 4.563 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.909 5.909 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.273 1.273 21 C 0.061 3.939 22 C -0.105 4.105 23 C 0.060 3.940 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.369 0.631 41 H 0.268 0.732 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -16.434 10.501 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.273 5.273 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.094 4.094 7 C -0.075 4.075 8 N -0.238 5.238 9 C -0.079 4.079 10 C -0.156 4.156 11 C 0.199 3.801 12 O -0.394 6.394 13 C -0.602 4.602 14 H 0.071 0.929 15 C -0.171 4.171 16 N -0.548 5.548 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.197 1.197 21 C -0.067 4.067 22 C -0.144 4.144 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.217 0.783 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.848 -16.418 11.172 20.442 hybrid contribution 2.075 0.930 -1.509 2.729 sum -2.773 -15.488 9.663 18.464 Atomic orbital electron populations 1.21786 0.94352 1.02187 1.02065 1.22126 0.96641 0.88168 1.00942 1.62013 1.14166 1.16120 1.34982 1.22093 1.00832 0.94288 0.89699 1.21404 0.95096 0.95051 1.01760 1.21105 0.96678 0.93473 0.98144 1.22367 0.98818 0.94818 0.91490 1.64706 1.50209 1.02415 1.06490 1.22766 0.94056 0.97208 0.93849 1.22697 0.99269 0.95442 0.98225 1.19577 0.81166 0.91221 0.88148 1.86145 1.33252 1.92979 1.27010 1.21874 1.32513 1.12789 0.92980 0.92859 1.25687 0.95977 1.00150 0.95288 1.69897 1.47543 1.39144 0.98208 0.85556 0.78577 0.79843 0.77674 1.20133 1.20522 1.19740 1.22989 0.98549 0.88535 0.96599 1.21575 1.01020 0.94647 0.97118 1.22065 0.87080 0.96828 1.00839 0.93169 0.90955 0.92319 0.95261 0.89876 0.95812 0.90228 0.92050 0.92310 0.92472 0.90815 0.95019 0.94072 0.91287 0.94021 0.93528 0.78337 0.92304 0.91659 0.93568 0.91076 0.90754 0.89392 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.84 71.98 0.71 -1.44 16 2 C 0.05 0.79 5.68 86.30 0.49 1.28 16 3 N -0.55 -11.05 4.66 -896.37 -4.17 -15.22 16 4 C 0.06 1.32 5.29 86.32 0.46 1.78 16 5 C -0.10 -2.50 5.24 30.65 0.16 -2.34 16 6 C -0.08 -1.92 2.21 -10.71 -0.02 -1.95 16 7 C 0.05 1.61 4.13 86.30 0.36 1.97 16 8 N -0.51 -19.64 4.82 -883.01 -4.26 -23.90 16 9 C 0.05 1.91 5.53 86.45 0.48 2.39 16 10 C -0.12 -5.59 5.17 31.48 0.16 -5.42 16 11 C 0.24 12.15 0.95 -10.33 -0.01 12.14 16 12 O -0.59 -31.70 13.09 -148.98 -1.95 -33.65 16 13 C -0.56 -30.78 8.13 25.60 0.21 -30.57 16 14 H 0.05 2.90 7.79 -2.91 -0.02 2.87 16 15 C 0.03 1.59 5.27 84.65 0.45 2.04 16 16 N -0.91 -49.35 11.03 21.44 0.24 -49.12 16 17 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.06 2.69 5.70 86.65 0.49 3.18 16 22 C -0.11 -2.16 5.38 30.65 0.16 -1.99 16 23 C 0.06 1.12 5.46 86.32 0.47 1.59 16 24 H 0.05 0.80 6.43 -2.39 -0.02 0.78 16 25 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.03 0.48 8.12 -2.38 -0.02 0.46 16 28 H 0.08 1.15 7.99 -2.39 -0.02 1.13 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.70 6.21 -2.39 -0.01 1.68 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.81 7.84 -2.39 -0.02 1.79 16 33 H 0.06 1.57 7.19 -2.39 -0.02 1.56 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 36 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 37 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 38 H 0.04 2.08 7.84 -2.39 -0.02 2.07 16 39 H 0.05 2.35 7.94 -2.39 -0.02 2.33 16 40 H 0.37 20.18 7.63 -74.06 -0.56 19.61 16 41 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.09 1.36 8.02 -2.39 -0.02 1.34 16 47 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -57.61 354.60 -3.20 -60.81 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.35 Total: 33.80 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.56 Total: -17.35 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -8.19 Total: -88.24 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.95 Total: -33.65 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -57.61 -3.20 -60.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659528065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.179 kcal (2) G-P(sol) polarization free energy of solvation -57.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds