Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47021 * 2 1 4 4 C 1.50697 * 109.46850 * 119.99815 * 2 1 3 5 5 O 1.21283 * 120.00381 * 83.37198 * 4 2 1 6 6 N 1.34783 * 120.00018 * 263.36835 * 4 2 1 7 7 C 1.47422 * 125.64633 * 5.60602 * 6 4 2 8 8 C 1.54910 * 104.83326 * 155.83399 * 7 6 4 9 9 C 1.55159 * 101.57802 * 37.01189 * 8 7 6 10 10 C 1.47012 * 125.64937 * 185.30035 * 6 4 2 11 11 H 1.09005 * 109.88248 * 300.51228 * 10 6 4 12 12 C 1.53002 * 109.88587 * 61.67776 * 10 6 4 13 13 N 1.46495 * 109.47046 * 287.58654 * 12 10 6 14 14 C 1.36937 * 120.00116 * 172.16023 * 13 12 10 15 15 H 1.08001 * 119.99781 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00061 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00360 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47305 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47040 * 119.99806 * 18 16 14 21 21 H 1.48495 * 109.47373 * 239.99966 * 18 16 14 22 22 C 1.53000 * 109.46980 * 239.99448 * 2 1 3 23 23 C 1.53005 * 109.46755 * 60.00151 * 22 2 1 24 24 C 1.52992 * 109.47148 * 179.97438 * 22 2 1 25 25 C 1.52999 * 109.47426 * 300.00347 * 22 2 1 26 26 H 1.08999 * 109.47777 * 180.76610 * 1 2 3 27 27 H 1.08996 * 109.47378 * 60.76253 * 1 2 3 28 28 H 1.09004 * 109.47366 * 300.76744 * 1 2 3 29 29 H 1.08999 * 110.37276 * 274.67611 * 7 6 4 30 30 H 1.09004 * 110.36698 * 36.88818 * 7 6 4 31 31 H 1.08999 * 111.00834 * 155.08249 * 8 7 6 32 32 H 1.09000 * 111.00558 * 278.94245 * 8 7 6 33 33 H 1.08993 * 110.72165 * 82.86060 * 9 8 7 34 34 H 1.09008 * 110.71851 * 205.95838 * 9 8 7 35 35 H 1.09000 * 109.46569 * 47.58661 * 12 10 6 36 36 H 1.08996 * 109.47217 * 167.58864 * 12 10 6 37 37 H 0.97000 * 120.00289 * 352.16850 * 13 12 10 38 38 H 0.97001 * 120.00021 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47338 * 60.00295 * 23 22 2 40 40 H 1.09002 * 109.46927 * 180.02562 * 23 22 2 41 41 H 1.09001 * 109.47393 * 299.99671 * 23 22 2 42 42 H 1.09000 * 109.47387 * 60.00142 * 24 22 2 43 43 H 1.08994 * 109.47663 * 180.02562 * 24 22 2 44 44 H 1.09007 * 109.47209 * 300.00355 * 24 22 2 45 45 H 1.09004 * 109.46859 * 59.99683 * 25 22 2 46 46 H 1.08993 * 109.47265 * 179.97438 * 25 22 2 47 47 H 1.09006 * 109.46857 * 299.99807 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1201 -1.9200 1.2391 6 7 2.3840 -0.0014 2.3215 7 6 2.2193 1.4538 2.4904 8 6 2.1658 1.6716 4.0232 9 6 3.1935 0.6220 4.5229 10 6 2.9895 -0.5522 3.5427 11 1 2.3244 -1.2946 3.9839 12 6 4.3399 -1.1907 3.2116 13 7 4.1226 -2.4424 2.4823 14 6 5.1864 -3.1116 1.9386 15 1 6.1857 -2.7168 2.0478 16 6 4.9805 -4.2975 1.2471 17 7 3.7626 -4.7785 1.1135 18 14 6.4318 -5.2107 0.5060 19 1 7.6843 -4.4671 0.7948 20 1 6.5160 -6.5699 1.0981 21 1 6.2489 -5.3213 -0.9635 22 6 2.0400 -0.7214 -1.2492 23 6 1.5299 -0.0001 -2.4985 24 6 3.5699 -0.7208 -1.2495 25 6 1.5299 -2.1638 -1.2491 26 1 -0.3634 -1.0275 0.0137 27 1 -0.3634 0.5019 -0.8967 28 1 -0.3634 0.5257 0.8830 29 1 3.0694 1.9842 2.0613 30 1 1.2914 1.7871 2.0256 31 1 2.4802 2.6818 4.2855 32 1 1.1703 1.4601 4.4134 33 1 4.2084 1.0135 4.4555 34 1 2.9666 0.3162 5.5443 35 1 4.9233 -0.5072 2.5947 36 1 4.8802 -1.3975 4.1354 37 1 3.2252 -2.7972 2.3844 38 1 3.6187 -5.6069 0.6299 39 1 1.8933 1.0275 -2.4986 40 1 1.8928 -0.5143 -3.3884 41 1 0.4399 -0.0001 -2.4985 42 1 3.9337 -1.2343 -0.3595 43 1 3.9333 -1.2343 -2.1396 44 1 3.9329 0.3070 -1.2498 45 1 0.4399 -2.1638 -1.2491 46 1 1.8928 -2.6776 -2.1393 47 1 1.8933 -2.6777 -0.3591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715211389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = -15.951985 kcal Electronic energy + Delta-G solvation = -25039.365909 eV Core-core repulsion = 21836.840064 eV Total energy + Delta-G solvation = -3202.525845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16106 -38.01617 -35.83266 -34.15462 -31.78719 -31.13867 -30.25381 -28.62680 -27.01368 -26.54158 -24.91435 -24.18247 -22.75555 -21.46476 -20.96973 -18.86456 -17.72031 -17.19063 -16.35292 -16.03121 -14.83009 -14.64888 -14.37942 -14.10912 -13.58225 -13.47392 -13.36446 -13.13094 -12.88689 -12.74712 -12.34466 -12.11353 -11.99553 -11.75592 -11.56239 -11.45578 -11.33947 -11.24722 -11.08984 -10.98790 -10.70387 -10.60780 -10.53847 -10.43042 -10.39942 -10.05418 -9.98992 -9.81594 -9.41685 -8.63302 -8.30091 -7.96963 -6.54040 -5.43227 -2.70465 3.38583 3.51806 3.56247 3.61611 3.63507 4.66282 4.68961 4.82024 4.94330 5.00677 5.14000 5.20541 5.45074 5.45683 5.53365 5.58965 5.66539 5.67550 5.75048 5.79790 5.83397 5.92771 5.96722 5.98781 6.06517 6.07204 6.16398 6.17946 6.25912 6.30734 6.33674 6.46269 6.55154 6.65002 6.69049 6.72190 6.82840 6.89704 7.09685 7.10990 7.57287 7.92644 8.20118 8.71704 9.07934 9.87754 10.53648 10.96874 11.76622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.008312 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.427882 B = 3367.942420 C = 4902.482913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.075 0.925 4 C 0.521 3.479 5 O -0.455 6.455 6 N -0.620 5.620 7 C 0.102 3.898 8 C -0.132 4.132 9 C -0.124 4.124 10 C 0.130 3.870 11 H 0.071 0.929 12 C 0.145 3.855 13 N -0.722 5.722 14 C -0.235 4.235 15 H 0.058 0.942 16 C -0.007 4.007 17 N -0.910 5.910 18 Si 0.890 3.110 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.045 4.045 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.017 0.983 36 H 0.014 0.986 37 H 0.402 0.598 38 H 0.247 0.753 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 16.346 0.561 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.094 0.906 4 C 0.308 3.692 5 O -0.325 6.325 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.170 4.170 9 C -0.163 4.163 10 C 0.026 3.974 11 H 0.089 0.911 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.367 4.367 15 H 0.076 0.924 16 C -0.204 4.204 17 N -0.558 5.558 18 Si 0.722 3.278 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.222 1.222 22 C -0.046 4.046 23 C -0.198 4.198 24 C -0.203 4.203 25 C -0.224 4.224 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.246 0.754 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.188 15.529 0.409 17.117 hybrid contribution 0.740 -0.412 -0.607 1.042 sum -6.448 15.117 -0.198 16.436 Atomic orbital electron populations 1.21815 0.93599 1.03112 1.01440 1.21249 0.96847 0.99450 0.93707 0.90641 1.20235 0.78060 0.88001 0.82897 1.90600 1.49636 1.12521 1.79741 1.48578 1.63699 1.07286 1.16198 1.22191 1.00779 0.82889 0.96336 1.22748 0.99981 0.99401 0.94878 1.22621 0.99733 0.95145 0.98799 1.21824 0.95992 0.94988 0.84553 0.91129 1.20992 0.92466 0.89894 0.95043 1.43001 1.09096 1.21881 1.63519 1.19141 0.87995 1.02561 1.27043 0.92353 1.24618 0.95630 0.98428 1.01679 1.69751 1.18139 1.21527 1.46369 0.86372 0.82510 0.79977 0.78903 1.21012 1.22272 1.22228 1.20283 0.95954 0.96434 0.91880 1.21955 1.00623 0.99566 0.97622 1.21923 0.94091 1.00336 1.03912 1.22489 0.99242 0.94937 1.05779 0.91293 0.91775 0.93049 0.92124 0.91325 0.90371 0.90903 0.90535 0.90424 0.96498 0.96887 0.75400 0.94274 0.93384 0.92782 0.92768 0.89833 0.93173 0.94289 0.94306 0.94402 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 2 C -0.09 -1.37 1.57 -91.77 -0.14 -1.51 16 3 H 0.08 1.00 7.07 -51.93 -0.37 0.64 16 4 C 0.52 9.69 5.45 -10.98 -0.06 9.63 16 5 O -0.46 -10.65 9.15 5.55 0.05 -10.60 16 6 N -0.62 -10.11 3.07 -163.02 -0.50 -10.61 16 7 C 0.10 1.19 6.16 -2.53 -0.02 1.17 16 8 C -0.13 -1.29 7.08 -24.58 -0.17 -1.47 16 9 C -0.12 -1.51 6.45 -24.90 -0.16 -1.67 16 10 C 0.13 2.23 3.07 -66.96 -0.21 2.02 16 11 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.15 3.12 5.63 -4.04 -0.02 3.10 16 13 N -0.72 -19.37 4.40 -59.91 -0.26 -19.64 16 14 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 15 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.91 -28.55 13.06 55.49 0.72 -27.82 16 18 Si 0.89 23.54 29.55 -169.99 -5.02 18.51 16 19 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 21 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 22 C -0.05 -0.74 0.54 -154.51 -0.08 -0.82 16 23 C -0.14 -1.84 8.12 37.16 0.30 -1.53 16 24 C -0.15 -2.69 8.22 37.15 0.31 -2.39 16 25 C -0.17 -3.22 7.72 37.16 0.29 -2.93 16 26 H 0.07 1.00 6.47 -51.93 -0.34 0.66 16 27 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 28 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 37 H 0.40 11.51 4.70 -40.82 -0.19 11.32 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.64 6.41 -51.93 -0.33 0.30 16 42 H 0.08 1.95 6.88 -51.93 -0.36 1.59 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.66 6.45 -51.93 -0.33 0.33 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.13 3.06 4.88 -52.10 -0.25 2.81 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -33.26 351.07 -7.97 -41.23 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.34 Total: 8.93 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 0.10 Total: -5.30 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.04 Total: -58.07 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.05 Total: -10.60 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.26 -7.97 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715211389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.275 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds