Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46850 * 2 1 4 4 C 1.50698 * 109.47069 * 240.00349 * 2 1 3 5 5 O 1.21286 * 119.99569 * 239.99759 * 4 2 1 6 6 N 1.34770 * 120.00117 * 59.99735 * 4 2 1 7 7 C 1.47424 * 125.65179 * 5.21372 * 6 4 2 8 8 C 1.54905 * 104.83498 * 155.90638 * 7 6 4 9 9 C 1.55403 * 101.66879 * 36.92152 * 8 7 6 10 10 C 1.47023 * 125.64752 * 185.24990 * 6 4 2 11 11 H 1.08999 * 109.88178 * 300.59450 * 10 6 4 12 12 C 1.53004 * 109.88317 * 61.60503 * 10 6 4 13 13 N 1.46502 * 109.47086 * 185.64726 * 12 10 6 14 14 C 1.36938 * 119.99270 * 175.28792 * 13 12 10 15 15 H 1.07993 * 120.00605 * 359.73387 * 14 13 12 16 16 C 1.38816 * 119.99320 * 179.72339 * 14 13 12 17 17 N 1.31617 * 120.00339 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99721 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46967 * 90.00566 * 18 16 14 20 20 H 1.48505 * 109.47173 * 210.00084 * 18 16 14 21 21 H 1.48499 * 109.47580 * 330.00462 * 18 16 14 22 22 C 1.53001 * 109.47073 * 119.99794 * 2 1 3 23 23 C 1.52998 * 109.46824 * 180.02562 * 22 2 1 24 24 C 1.52992 * 109.47142 * 300.00247 * 22 2 1 25 25 C 1.53002 * 109.47039 * 60.00430 * 22 2 1 26 26 H 1.09002 * 109.47331 * 299.99800 * 1 2 3 27 27 H 1.08998 * 109.47362 * 60.00019 * 1 2 3 28 28 H 1.09005 * 109.46850 * 179.97438 * 1 2 3 29 29 H 1.09007 * 110.36246 * 274.74548 * 7 6 4 30 30 H 1.08995 * 110.36878 * 36.94868 * 7 6 4 31 31 H 1.09006 * 111.00450 * 155.07894 * 8 7 6 32 32 H 1.09001 * 111.00317 * 278.89458 * 8 7 6 33 33 H 1.08990 * 110.85523 * 206.30224 * 9 8 7 34 34 H 1.09000 * 110.69191 * 82.94762 * 9 8 7 35 35 H 1.09005 * 109.47013 * 65.64910 * 12 10 6 36 36 H 1.08998 * 109.47114 * 305.65168 * 12 10 6 37 37 H 0.96994 * 119.99802 * 355.01759 * 13 12 10 38 38 H 0.97001 * 120.00317 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47421 * 60.00412 * 23 22 2 40 40 H 1.08998 * 109.47113 * 180.02562 * 23 22 2 41 41 H 1.09002 * 109.47152 * 300.00144 * 23 22 2 42 42 H 1.08999 * 109.47660 * 59.99995 * 24 22 2 43 43 H 1.08997 * 109.47301 * 179.97438 * 24 22 2 44 44 H 1.08997 * 109.47400 * 299.99770 * 24 22 2 45 45 H 1.09002 * 109.47079 * 59.99769 * 25 22 2 46 46 H 1.08998 * 109.47046 * 179.97438 * 25 22 2 47 47 H 1.09005 * 109.46988 * 299.99761 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 0.9624 0.9912 -2.7357 8 6 1.3770 1.3847 -4.1755 9 6 1.4886 -0.0053 -4.8614 10 6 2.0344 -0.9025 -3.7306 11 1 3.1152 -1.0050 -3.8278 12 6 1.3733 -2.2808 -3.7950 13 7 1.8131 -2.9773 -5.0065 14 6 1.4263 -4.2716 -5.2306 15 1 0.8008 -4.7804 -4.5122 16 6 1.8383 -4.9297 -6.3813 17 7 2.6010 -4.3097 -7.2567 18 14 1.3115 -6.6956 -6.6868 19 1 0.0303 -6.7071 -7.4376 20 1 2.3556 -7.3938 -7.4790 21 1 1.1296 -7.3899 -5.3867 22 6 2.0401 -0.7212 1.2493 23 6 3.5700 -0.7206 1.2495 24 6 1.5300 0.0000 2.4984 25 6 1.5301 -2.1638 1.2493 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.1112 0.8091 -2.6864 30 1 1.2467 1.7721 -2.0304 31 1 0.6085 1.9948 -4.6504 32 1 2.3382 1.8987 -4.1786 33 1 2.1872 0.0295 -5.6973 34 1 0.5090 -0.3523 -5.1902 35 1 0.2898 -2.1634 -3.8164 36 1 1.6585 -2.8619 -2.9180 37 1 2.3749 -2.5202 -5.6517 38 1 2.8892 -4.7696 -8.0606 39 1 3.9330 0.3071 1.2498 40 1 3.9334 -1.2348 2.1393 41 1 3.9337 -1.2342 0.3595 42 1 0.4400 0.0000 2.4985 43 1 1.8930 -0.5140 3.3884 44 1 1.8933 1.0276 2.4985 45 1 1.8935 -2.6776 0.3593 46 1 1.8938 -2.6777 2.1390 47 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715211390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -33.182537 kcal Electronic energy + Delta-G solvation = -23912.855369 eV Core-core repulsion = 20709.582352 eV Total energy + Delta-G solvation = -3203.273018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57759 -38.29747 -36.26838 -34.49555 -32.32179 -31.29855 -30.37260 -28.60579 -27.36670 -27.17117 -25.28947 -24.45316 -22.83999 -21.97564 -20.94201 -19.22105 -18.19445 -17.18867 -16.75198 -16.06627 -15.40133 -14.98122 -14.46647 -14.37746 -14.19654 -13.79384 -13.61055 -13.34520 -13.19786 -12.93625 -12.69596 -12.54076 -12.25881 -12.07815 -11.88644 -11.79836 -11.70460 -11.43534 -11.11237 -11.07941 -10.95447 -10.86390 -10.78479 -10.56683 -10.51814 -10.42652 -10.33718 -9.99147 -9.68584 -9.14006 -8.79581 -8.32928 -6.85606 -5.70860 -2.98785 2.85442 3.15176 3.47931 3.53113 3.55503 4.46046 4.55125 4.63870 4.67708 4.75217 4.93095 5.00290 5.12329 5.19889 5.28464 5.36919 5.41137 5.49280 5.59190 5.61142 5.64018 5.65620 5.73497 5.74342 5.83086 5.87971 5.94299 5.96129 5.97703 6.08261 6.11672 6.14469 6.19435 6.22233 6.28993 6.45378 6.56010 6.59497 6.70433 6.88037 7.02520 7.75771 7.80414 8.45267 8.49445 9.59215 10.16110 10.51752 11.52290 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.004555 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.428567 B = 6145.561717 C = 7069.070461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 H 0.089 0.911 4 C 0.530 3.470 5 O -0.519 6.519 6 N -0.611 5.611 7 C 0.100 3.900 8 C -0.135 4.135 9 C -0.121 4.121 10 C 0.130 3.870 11 H 0.075 0.925 12 C 0.149 3.851 13 N -0.728 5.728 14 C -0.233 4.233 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.046 4.046 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.156 4.156 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 15.973 15.420 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.117 4.117 3 H 0.107 0.893 4 C 0.319 3.681 5 O -0.396 6.396 6 N -0.346 5.346 7 C -0.023 4.023 8 C -0.173 4.173 9 C -0.159 4.159 10 C 0.027 3.973 11 H 0.093 0.907 12 C 0.020 3.980 13 N -0.373 5.373 14 C -0.365 4.365 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.046 4.046 23 C -0.211 4.211 24 C -0.199 4.199 25 C -0.213 4.213 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.726 15.237 15.598 22.121 hybrid contribution -0.141 -0.727 -0.450 0.867 sum -3.866 14.510 15.148 21.329 Atomic orbital electron populations 1.22002 0.93264 1.03263 1.02567 1.21311 0.97366 1.00076 0.92950 0.89260 1.20251 0.80081 0.84686 0.83104 1.90620 1.37136 1.26442 1.85372 1.48570 1.56289 1.24115 1.05645 1.22371 0.96378 0.86461 0.97089 1.22851 1.02038 0.97864 0.94577 1.22716 1.02970 0.93094 0.97168 1.21798 1.00130 0.93719 0.81700 0.90651 1.20921 0.95373 0.90116 0.91570 1.42204 1.61388 1.12543 1.21119 1.19215 1.25064 0.89013 1.03184 0.91310 1.24708 1.00568 0.98390 0.97335 1.69655 1.40119 1.36725 1.11919 0.86186 0.77560 0.84798 0.77669 1.21783 1.21768 1.20776 1.20265 0.96099 0.95788 0.92474 1.22117 0.94221 1.01111 1.03673 1.21951 1.01000 0.99873 0.97124 1.22172 1.00151 0.95338 1.03637 0.91461 0.91775 0.91612 0.91287 0.91026 0.90073 0.90883 0.89841 0.90013 0.96907 0.94686 0.78347 0.93592 0.93814 0.93174 0.89558 0.92437 0.92589 0.92951 0.89456 0.93329 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.33 37.16 0.31 -1.16 16 2 C -0.10 -1.07 1.48 -91.77 -0.14 -1.21 16 3 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16 4 C 0.53 8.07 6.33 -10.99 -0.07 8.00 16 5 O -0.52 -9.87 10.53 5.55 0.06 -9.82 16 6 N -0.61 -8.91 3.05 -163.02 -0.50 -9.40 16 7 C 0.10 1.05 5.31 -2.53 -0.01 1.04 16 8 C -0.14 -1.41 7.09 -24.45 -0.17 -1.59 16 9 C -0.12 -1.77 6.14 -24.76 -0.15 -1.92 16 10 C 0.13 2.27 2.91 -66.95 -0.19 2.08 16 11 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.15 3.27 5.67 -4.04 -0.02 3.25 16 13 N -0.73 -19.26 5.46 -59.90 -0.33 -19.59 16 14 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 15 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.94 -28.82 13.06 55.49 0.72 -28.10 16 18 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.05 -0.52 0.54 -154.51 -0.08 -0.60 16 23 C -0.15 -1.89 8.18 37.16 0.30 -1.59 16 24 C -0.14 -1.25 8.12 37.15 0.30 -0.95 16 25 C -0.16 -2.01 7.82 37.16 0.29 -1.72 16 26 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 27 H 0.06 0.57 5.21 -51.93 -0.27 0.30 16 28 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 29 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 30 H 0.07 0.59 7.51 -51.93 -0.39 0.20 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.28 7.76 -51.93 -0.40 0.87 16 35 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 36 H 0.04 0.86 6.88 -51.93 -0.36 0.50 16 37 H 0.38 10.42 7.47 -40.82 -0.31 10.12 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.32 5.51 -51.93 -0.29 1.04 16 42 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.43 5.51 -51.93 -0.29 1.14 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -32.78 350.03 -7.84 -40.61 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.16 Total: 6.79 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.11 Total: -3.87 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.10 Total: -57.09 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.78 -7.84 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715211390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds