Wall clock time and date at job start Tue Mar 31 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46824 * 2 1 4 4 C 1.36937 * 119.99828 * 265.79046 * 3 2 1 5 5 H 1.07997 * 119.99730 * 146.21750 * 4 3 2 6 6 C 1.38809 * 120.00322 * 326.21181 * 4 3 2 7 7 N 1.31624 * 119.99996 * 337.69992 * 6 4 3 8 8 Si 1.86797 * 120.00127 * 157.69008 * 6 4 3 9 9 H 1.48498 * 109.47211 * 60.00321 * 8 6 4 10 10 H 1.48499 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47260 * 300.00398 * 8 6 4 12 12 C 1.46498 * 119.99949 * 85.79111 * 3 2 1 13 13 C 1.53001 * 109.47105 * 89.99739 * 12 3 2 14 14 C 1.52997 * 109.47419 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.47348 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00041 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99748 * 179.97438 * 16 15 14 19 19 H 1.08994 * 110.43728 * 300.69877 * 18 16 15 20 20 C 1.54891 * 110.48465 * 63.24153 * 18 16 15 21 21 C 1.55031 * 102.67981 * 156.51207 * 20 18 16 22 22 C 1.54262 * 104.28367 * 322.23420 * 21 20 18 23 23 H 1.09005 * 110.03169 * 264.23166 * 22 21 20 24 24 C 1.53003 * 110.03579 * 142.79944 * 22 21 20 25 25 C 1.53878 * 106.60143 * 23.51638 * 22 21 20 26 26 H 1.09006 * 109.46604 * 299.99722 * 1 2 3 27 27 H 1.09000 * 109.47417 * 59.99542 * 1 2 3 28 28 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46811 * 240.00427 * 2 1 3 30 30 H 1.08991 * 109.47630 * 120.00323 * 2 1 3 31 31 H 0.96997 * 119.99512 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47113 * 330.00141 * 12 3 2 33 33 H 1.08996 * 109.47336 * 209.99973 * 12 3 2 34 34 H 1.09007 * 109.47063 * 59.99620 * 13 12 3 35 35 H 1.09004 * 109.47225 * 299.99956 * 13 12 3 36 36 H 1.09005 * 109.46863 * 59.99864 * 14 13 12 37 37 H 1.08996 * 109.47124 * 300.00297 * 14 13 12 38 38 H 0.96998 * 119.99892 * 359.97438 * 15 14 13 39 39 H 1.08991 * 110.75509 * 274.93015 * 20 18 16 40 40 H 1.08998 * 110.75695 * 38.30841 * 20 18 16 41 41 H 1.09001 * 110.52586 * 203.48385 * 21 20 18 42 42 H 1.09008 * 110.47910 * 80.95590 * 21 20 18 43 43 H 1.09000 * 109.46959 * 302.84090 * 24 22 21 44 44 H 1.09005 * 109.46722 * 62.83370 * 24 22 21 45 45 H 1.08992 * 109.47225 * 182.82976 * 24 22 21 46 46 H 1.08996 * 110.03455 * 240.72171 * 25 22 21 47 47 H 1.08994 * 110.07459 * 119.30329 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3286 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2996 6 6 2.8607 1.2601 -2.2313 7 7 3.4695 0.1183 -1.9903 8 14 2.7123 1.8876 -3.9845 9 1 3.3848 3.2069 -4.0966 10 1 3.3563 0.9229 -4.9117 11 1 1.2775 2.0317 -4.3389 12 6 2.1747 2.1029 1.2653 13 6 3.5854 1.8746 1.8117 14 6 3.7486 2.6277 3.1334 15 7 5.0996 2.4096 3.6563 16 6 5.4723 2.9797 4.8193 17 8 4.6894 3.6736 5.4328 18 6 6.8619 2.7548 5.3574 19 1 7.0402 1.6917 5.5186 20 6 7.9194 3.3412 4.3895 21 6 9.1364 3.5806 5.3196 22 6 8.5132 4.0665 6.6444 23 1 8.5156 5.1560 6.6806 24 6 9.2960 3.5003 7.8307 25 6 7.0669 3.5416 6.6685 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8898 31 1 3.8416 -0.3969 -2.7231 32 1 1.4426 1.7369 1.9852 33 1 2.0180 3.1685 1.0976 34 1 4.3175 2.2406 1.0917 35 1 3.7421 0.8090 1.9794 36 1 3.0165 2.2613 3.8531 37 1 3.5917 3.6933 2.9662 38 1 5.7256 1.8543 3.1658 39 1 8.1647 2.6249 3.6054 40 1 7.5717 4.2810 3.9607 41 1 9.7914 4.3457 4.9027 42 1 9.6863 2.6522 5.4746 43 1 9.3090 2.4120 7.7713 44 1 10.3183 3.8777 7.8048 45 1 8.8187 3.8079 8.7611 46 1 6.3675 4.3762 6.7163 47 1 6.9220 2.8836 7.5252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752214974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:34 Heat of formation + Delta-G solvation = -53.323700 kcal Electronic energy + Delta-G solvation = -22300.537617 eV Core-core repulsion = 19096.391213 eV Total energy + Delta-G solvation = -3204.146404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08259 -37.78321 -36.37349 -34.81551 -32.24285 -31.52217 -30.76452 -29.11804 -28.56644 -25.93355 -24.81680 -23.34025 -21.98003 -21.35684 -20.33521 -19.83014 -19.21236 -17.33089 -16.66295 -15.94475 -15.49025 -15.11794 -14.90691 -14.68695 -14.07432 -13.88883 -13.62776 -13.58587 -13.27205 -13.17592 -12.44557 -12.37091 -12.27213 -11.88960 -11.61745 -11.46674 -11.31801 -11.06925 -11.01142 -10.95347 -10.93622 -10.89772 -10.70147 -10.65529 -10.59545 -10.26748 -9.93606 -9.77287 -9.58923 -9.56045 -8.83661 -8.47769 -6.62614 -5.79491 -3.32378 2.76257 3.35311 3.38041 3.42310 3.45432 4.30167 4.35637 4.48000 4.54653 4.95477 5.05111 5.12933 5.26354 5.29127 5.31193 5.34313 5.38612 5.40592 5.56466 5.60499 5.72417 5.75297 5.80725 5.87707 5.91021 5.98285 6.01232 6.16887 6.19902 6.23545 6.31294 6.32489 6.50719 6.56572 6.64414 6.75973 6.88315 6.92264 7.11015 7.28233 7.69257 7.75578 7.81678 8.37238 8.50288 9.19040 9.82936 10.39133 11.21151 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.002970 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.485019 B = 9425.948549 C =10125.112063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.585 5.585 4 C -0.255 4.255 5 H 0.061 0.939 6 C 0.007 3.993 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.152 3.848 13 C -0.146 4.146 14 C 0.119 3.881 15 N -0.724 5.724 16 C 0.515 3.485 17 O -0.548 6.548 18 C -0.115 4.115 19 H 0.098 0.902 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.099 4.099 23 H 0.072 0.928 24 C -0.144 4.144 25 C -0.107 4.107 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.018 0.982 31 H 0.254 0.746 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.401 0.599 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.924 3.109 14.784 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.025 3.975 13 C -0.186 4.186 14 C -0.005 4.005 15 N -0.375 5.375 16 C 0.301 3.699 17 O -0.426 6.426 18 C -0.136 4.136 19 H 0.116 0.884 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.117 4.117 23 H 0.090 0.910 24 C -0.202 4.202 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.235 0.765 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.411 3.487 15.090 18.123 hybrid contribution 0.275 -0.121 -1.212 1.248 sum 9.685 3.367 13.879 17.256 Atomic orbital electron populations 1.22318 1.00969 0.98660 1.00384 1.20947 0.89749 0.86499 1.01690 1.43915 1.73930 1.11786 1.00886 1.19056 1.35771 0.93961 0.89693 0.92114 1.25076 0.97135 0.97929 0.99110 1.69975 1.36631 1.15877 1.30824 0.86456 0.77967 0.78075 0.84827 1.20799 1.21671 1.20975 1.20779 0.91938 0.96338 0.88456 1.22475 1.02767 0.99622 0.93775 1.21514 0.82296 1.00636 0.96069 1.46189 1.16147 1.51740 1.23383 1.20553 0.89275 0.79315 0.80771 1.90661 1.54175 1.39027 1.58742 1.22168 0.92274 1.01989 0.97191 0.88363 1.22514 0.94266 1.01412 0.97086 1.22467 0.97098 1.01307 0.94755 1.21771 0.94702 1.00304 0.94937 0.90980 1.21888 0.99711 1.00901 0.97664 1.22153 0.96346 1.00490 0.95516 0.94903 0.93284 0.94748 0.88360 0.96308 0.93588 0.94579 0.93751 0.91149 0.92309 0.92195 0.91984 0.76523 0.90661 0.90885 0.91466 0.91263 0.92593 0.92847 0.92722 0.89871 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 37.16 0.38 -2.95 16 2 C 0.14 3.21 5.97 -4.04 -0.02 3.18 16 3 N -0.58 -14.22 2.45 -173.24 -0.43 -14.65 16 4 C -0.25 -6.82 9.49 -15.06 -0.14 -6.96 16 5 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 6 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 7 N -0.89 -24.93 11.32 55.49 0.63 -24.30 16 8 Si 0.90 21.29 29.61 -169.99 -5.03 16.25 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.15 3.10 5.69 -4.04 -0.02 3.08 16 13 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 14 C 0.12 1.87 5.67 -4.05 -0.02 1.85 16 15 N -0.72 -10.01 5.52 -60.30 -0.33 -10.34 16 16 C 0.51 7.30 7.14 -10.98 -0.08 7.22 16 17 O -0.55 -9.80 15.44 5.56 0.09 -9.72 16 18 C -0.11 -1.20 3.25 -90.11 -0.29 -1.50 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.11 -1.05 6.31 -24.66 -0.16 -1.21 16 21 C -0.12 -0.93 6.36 -25.00 -0.16 -1.09 16 22 C -0.10 -0.82 3.50 -89.50 -0.31 -1.14 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.14 -1.01 8.85 37.16 0.33 -0.69 16 25 C -0.11 -1.10 5.83 -25.61 -0.15 -1.25 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 2.60 5.32 -51.93 -0.28 2.32 16 30 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 4.80 8.47 -40.82 -0.35 4.45 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.49 7.83 -51.92 -0.41 0.08 16 43 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 1.04 6.87 -51.93 -0.36 0.68 16 47 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -29.85 373.16 -9.27 -39.12 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.93 Total: 2.15 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.89 Total: -4.13 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.13 Total: -49.29 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.85 -9.27 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.207 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds