Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46824 * 2 1 4 4 C 1.36937 * 119.99828 * 265.79046 * 3 2 1 5 5 H 1.07997 * 119.99730 * 146.21750 * 4 3 2 6 6 C 1.38809 * 120.00322 * 326.21181 * 4 3 2 7 7 N 1.31624 * 119.99996 * 337.69992 * 6 4 3 8 8 Si 1.86797 * 120.00127 * 157.69008 * 6 4 3 9 9 H 1.48498 * 109.47211 * 60.00321 * 8 6 4 10 10 H 1.48499 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47260 * 300.00398 * 8 6 4 12 12 C 1.46498 * 119.99949 * 85.79111 * 3 2 1 13 13 C 1.53001 * 109.47105 * 89.99739 * 12 3 2 14 14 C 1.52997 * 109.47419 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.47348 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00041 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99748 * 179.97438 * 16 15 14 19 19 H 1.08994 * 110.43728 * 300.69877 * 18 16 15 20 20 C 1.54891 * 110.48465 * 63.24153 * 18 16 15 21 21 C 1.55031 * 102.67981 * 156.51207 * 20 18 16 22 22 C 1.54262 * 104.28367 * 322.23420 * 21 20 18 23 23 H 1.09005 * 110.03169 * 264.23166 * 22 21 20 24 24 C 1.53003 * 110.03579 * 142.79944 * 22 21 20 25 25 C 1.53878 * 106.60143 * 23.51638 * 22 21 20 26 26 H 1.09006 * 109.46604 * 299.99722 * 1 2 3 27 27 H 1.09000 * 109.47417 * 59.99542 * 1 2 3 28 28 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46811 * 240.00427 * 2 1 3 30 30 H 1.08991 * 109.47630 * 120.00323 * 2 1 3 31 31 H 0.96997 * 119.99512 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47113 * 330.00141 * 12 3 2 33 33 H 1.08996 * 109.47336 * 209.99973 * 12 3 2 34 34 H 1.09007 * 109.47063 * 59.99620 * 13 12 3 35 35 H 1.09004 * 109.47225 * 299.99956 * 13 12 3 36 36 H 1.09005 * 109.46863 * 59.99864 * 14 13 12 37 37 H 1.08996 * 109.47124 * 300.00297 * 14 13 12 38 38 H 0.96998 * 119.99892 * 359.97438 * 15 14 13 39 39 H 1.08991 * 110.75509 * 274.93015 * 20 18 16 40 40 H 1.08998 * 110.75695 * 38.30841 * 20 18 16 41 41 H 1.09001 * 110.52586 * 203.48385 * 21 20 18 42 42 H 1.09008 * 110.47910 * 80.95590 * 21 20 18 43 43 H 1.09000 * 109.46959 * 302.84090 * 24 22 21 44 44 H 1.09005 * 109.46722 * 62.83370 * 24 22 21 45 45 H 1.08992 * 109.47225 * 182.82976 * 24 22 21 46 46 H 1.08996 * 110.03455 * 240.72171 * 25 22 21 47 47 H 1.08994 * 110.07459 * 119.30329 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3286 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2996 6 6 2.8607 1.2601 -2.2313 7 7 3.4695 0.1183 -1.9903 8 14 2.7123 1.8876 -3.9845 9 1 3.3848 3.2069 -4.0966 10 1 3.3563 0.9229 -4.9117 11 1 1.2775 2.0317 -4.3389 12 6 2.1747 2.1029 1.2653 13 6 3.5854 1.8746 1.8117 14 6 3.7486 2.6277 3.1334 15 7 5.0996 2.4096 3.6563 16 6 5.4723 2.9797 4.8193 17 8 4.6894 3.6736 5.4328 18 6 6.8619 2.7548 5.3574 19 1 7.0402 1.6917 5.5186 20 6 7.9194 3.3412 4.3895 21 6 9.1364 3.5806 5.3196 22 6 8.5132 4.0665 6.6444 23 1 8.5156 5.1560 6.6806 24 6 9.2960 3.5003 7.8307 25 6 7.0669 3.5416 6.6685 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8898 31 1 3.8416 -0.3969 -2.7231 32 1 1.4426 1.7369 1.9852 33 1 2.0180 3.1685 1.0976 34 1 4.3175 2.2406 1.0917 35 1 3.7421 0.8090 1.9794 36 1 3.0165 2.2613 3.8531 37 1 3.5917 3.6933 2.9662 38 1 5.7256 1.8543 3.1658 39 1 8.1647 2.6249 3.6054 40 1 7.5717 4.2810 3.9607 41 1 9.7914 4.3457 4.9027 42 1 9.6863 2.6522 5.4746 43 1 9.3090 2.4120 7.7713 44 1 10.3183 3.8777 7.8048 45 1 8.8187 3.8079 8.7611 46 1 6.3675 4.3762 6.7163 47 1 6.9220 2.8836 7.5252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752214974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = -69.444066 kcal Electronic energy + Delta-G solvation = -22301.236649 eV Core-core repulsion = 19096.391213 eV Total energy + Delta-G solvation = -3204.845436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14691 -38.71097 -38.07107 -36.24462 -33.81914 -32.89782 -32.06146 -30.37402 -29.75698 -27.26165 -26.03417 -24.94550 -23.24516 -22.62986 -21.70243 -20.99396 -20.18682 -18.59339 -18.35139 -17.16555 -16.81394 -16.54455 -16.08430 -16.01613 -15.62703 -15.34826 -14.91895 -14.52942 -14.31417 -14.15888 -14.01605 -13.95427 -13.26745 -13.18475 -12.96169 -12.81126 -12.75533 -12.63540 -12.45923 -12.34556 -12.09339 -12.05781 -11.83332 -11.71602 -11.62301 -11.56088 -11.49787 -11.37347 -11.30172 -10.79318 -10.48406 -10.08256 -8.59420 -7.81422 -5.37764 1.47095 1.50177 1.56084 1.63167 2.24094 2.53024 3.26002 3.52103 3.59027 3.65576 3.79775 4.12533 4.14346 4.30844 4.36514 4.43837 4.49611 4.53519 4.57147 4.58573 4.67830 4.71184 4.74622 4.82443 4.88710 4.95524 4.96814 4.99738 5.02809 5.13730 5.15546 5.16623 5.30161 5.33473 5.35283 5.37411 5.46820 5.52550 5.53819 5.57715 5.68873 5.90147 6.48042 6.56811 7.18817 7.24293 7.89841 8.40189 9.15567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.002970 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.485019 B = 9425.948549 C =10125.112063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.600 5.600 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.038 4.038 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.282 1.282 12 C 0.148 3.852 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.513 3.487 17 O -0.589 6.589 18 C -0.109 4.109 19 H 0.121 0.879 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.097 4.097 23 H 0.067 0.933 24 C -0.142 4.142 25 C -0.107 4.107 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.251 0.749 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.411 0.589 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 2.818 15.465 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.394 4.394 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.021 3.979 13 C -0.164 4.164 14 C 0.007 3.993 15 N -0.370 5.370 16 C 0.301 3.699 17 O -0.469 6.469 18 C -0.130 4.130 19 H 0.139 0.861 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.115 4.115 23 H 0.086 0.914 24 C -0.199 4.199 25 C -0.145 4.145 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.307 3.196 15.778 19.115 hybrid contribution -0.038 -0.011 -1.366 1.367 sum 10.269 3.186 14.412 17.980 Atomic orbital electron populations 1.22149 0.98522 1.00204 1.00200 1.20897 0.91675 0.85998 1.00513 1.44105 1.74379 1.12147 1.01523 1.19237 1.35239 0.93900 0.91059 0.92730 1.25691 0.97310 0.98353 1.02108 1.70093 1.37621 1.16871 1.31348 0.85558 0.77701 0.77577 0.80925 1.20265 1.21840 1.20877 1.20891 0.93552 0.95941 0.87476 1.22126 1.00719 0.99312 0.94244 1.21209 0.83602 0.99684 0.94777 1.46103 1.15560 1.51799 1.23521 1.21221 0.90368 0.78199 0.80154 1.90645 1.55678 1.40774 1.59834 1.22230 0.89968 1.03431 0.97394 0.86111 1.22533 0.94348 1.00901 0.97410 1.22463 0.96525 1.02273 0.93808 1.21755 0.93590 1.00105 0.96081 0.91446 1.21865 0.99956 1.01204 0.96855 1.22147 0.97086 0.99636 0.95678 0.93490 0.94923 0.92370 0.91399 0.95612 0.93983 0.92800 0.93877 0.93384 0.92871 0.92027 0.92714 0.75272 0.89328 0.92466 0.90685 0.89796 0.92017 0.91844 0.92808 0.92645 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 10.24 71.98 0.74 -5.20 16 2 C 0.13 6.25 5.97 86.38 0.52 6.77 16 3 N -0.60 -29.10 2.45 -702.01 -1.72 -30.82 16 4 C -0.26 -14.16 9.49 84.03 0.80 -13.36 16 5 H 0.06 2.94 7.92 -2.91 -0.02 2.92 16 6 C -0.04 -2.03 4.93 84.86 0.42 -1.61 16 7 N -0.91 -51.75 11.32 21.65 0.25 -51.51 16 8 Si 0.95 43.90 29.61 68.60 2.03 45.93 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.15 5.93 5.69 86.38 0.49 6.42 16 13 C -0.12 -4.45 5.65 30.59 0.17 -4.27 16 14 C 0.13 4.09 5.67 86.38 0.49 4.58 16 15 N -0.72 -19.27 5.52 -463.06 -2.56 -21.83 16 16 C 0.51 14.24 7.14 87.66 0.63 14.87 16 17 O -0.59 -21.21 15.44 -3.03 -0.05 -21.25 16 18 C -0.11 -2.13 3.25 -10.46 -0.03 -2.16 16 19 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 20 C -0.11 -1.90 6.31 31.94 0.20 -1.69 16 21 C -0.11 -1.50 6.36 31.72 0.20 -1.30 16 22 C -0.10 -1.46 3.50 -10.07 -0.04 -1.49 16 23 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 24 C -0.14 -1.67 8.85 71.98 0.64 -1.04 16 25 C -0.11 -2.11 5.83 31.32 0.18 -1.93 16 26 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 3.62 5.32 -2.39 -0.01 3.61 16 30 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.25 13.80 8.31 -92.71 -0.77 13.02 16 32 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 33 H 0.04 1.72 8.04 -2.39 -0.02 1.71 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 9.33 8.47 -92.71 -0.79 8.54 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.90 7.83 -2.38 -0.02 0.89 16 43 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 44 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.05 1.41 6.87 -2.39 -0.02 1.39 16 47 H 0.07 1.32 7.67 -2.39 -0.02 1.30 16 Total: -1.00 -64.00 373.16 3.48 -60.52 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.13 Total: 20.38 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.40 Total: -1.43 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -4.03 Total: -104.16 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.00 3.48 -60.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.924 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds