Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46831 * 2 1 4 4 C 1.53001 * 109.47034 * 119.99141 * 2 1 3 5 5 N 1.46500 * 109.47078 * 175.00097 * 4 2 1 6 6 C 1.34777 * 119.99779 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00184 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99850 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47339 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47469 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.46817 * 64.99892 * 10 9 8 12 12 C 1.52999 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 11 15 15 C 1.53000 * 109.47233 * 184.99697 * 10 9 8 16 16 N 1.46495 * 109.47328 * 239.99632 * 2 1 3 17 17 C 1.36935 * 120.00482 * 85.00199 * 16 2 1 18 18 H 1.08000 * 119.99269 * 359.97438 * 17 16 2 19 19 C 1.38805 * 120.00148 * 180.02562 * 17 16 2 20 20 N 1.31624 * 119.99833 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00228 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47134 * 90.00108 * 21 19 17 23 23 H 1.48498 * 109.47011 * 209.99797 * 21 19 17 24 24 H 1.48500 * 109.47126 * 329.99949 * 21 19 17 25 25 H 1.08999 * 109.47330 * 300.00352 * 1 2 3 26 26 H 1.09001 * 109.47122 * 60.00235 * 1 2 3 27 27 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46996 * 55.00261 * 4 2 1 29 29 H 1.08997 * 109.47507 * 295.00215 * 4 2 1 30 30 H 0.96999 * 120.00112 * 0.02562 * 5 4 2 31 31 H 1.08997 * 109.47531 * 59.99661 * 8 6 5 32 32 H 1.09006 * 109.47449 * 300.00162 * 8 6 5 33 33 H 1.09008 * 109.47149 * 59.99835 * 9 8 6 34 34 H 1.08997 * 109.47163 * 299.99905 * 9 8 6 35 35 H 1.09002 * 109.47070 * 305.00072 * 10 9 8 36 36 H 1.08996 * 109.47853 * 300.00202 * 11 10 9 37 37 H 1.09002 * 109.47153 * 60.00231 * 11 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 40 40 H 1.09002 * 109.46935 * 299.99411 * 13 12 11 41 41 H 1.09001 * 109.46812 * 179.97438 * 13 12 11 42 42 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 44 44 H 1.08992 * 109.47399 * 300.00166 * 15 10 9 45 45 H 1.09004 * 109.46724 * 60.00652 * 15 10 9 46 46 H 0.97009 * 119.99901 * 265.00166 * 16 2 1 47 47 H 0.96998 * 120.00085 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8262 1.1907 6 6 4.1729 -1.4289 2.1910 7 8 3.5697 -1.8845 3.1393 8 6 5.6748 -1.5365 2.1309 9 6 6.1847 -2.2588 3.3796 10 6 7.7096 -2.3686 3.3184 11 6 8.3246 -0.9691 3.3808 12 6 9.8494 -1.0789 3.3203 13 6 10.3485 -1.9087 4.5049 14 6 9.7335 -3.3082 4.4425 15 6 8.2091 -3.1985 4.5027 16 7 2.0183 -0.6907 -1.1961 17 6 2.1492 -0.0077 -2.3757 18 1 1.8920 1.0401 -2.4243 19 6 2.6114 -0.6623 -3.5091 20 7 2.7367 -0.0059 -4.6431 21 14 3.0557 -2.4747 -3.4250 22 1 1.8583 -3.2932 -3.7439 23 1 4.1306 -2.7669 -4.4070 24 1 3.5312 -2.8050 -2.0575 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6053 -1.7197 1.2954 29 1 1.7516 -0.1581 2.1370 30 1 3.9824 -0.4621 0.4321 31 1 6.1092 -0.5378 2.0856 32 1 5.9637 -2.0989 1.2429 33 1 5.7504 -3.2576 3.4244 34 1 5.8960 -1.6968 4.2678 35 1 8.0019 -2.8527 2.3865 36 1 7.9687 -0.3778 2.5372 37 1 8.0323 -0.4851 4.3127 38 1 10.2876 -0.0818 3.3652 39 1 10.1420 -1.5631 2.3886 40 1 10.0558 -1.4245 5.4366 41 1 11.4348 -1.9872 4.4615 42 1 10.0894 -3.8994 5.2861 43 1 10.0261 -3.7923 3.5107 44 1 7.9168 -2.7145 5.4345 45 1 7.7710 -4.1956 4.4581 46 1 2.2490 -1.6319 -1.1524 47 1 3.0594 -0.4634 -5.4352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752915761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -71.748695 kcal Electronic energy + Delta-G solvation = -22418.088825 eV Core-core repulsion = 19213.143453 eV Total energy + Delta-G solvation = -3204.945372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.70009 -38.74119 -36.52812 -33.94194 -33.59698 -31.92423 -30.99423 -29.79959 -29.19701 -26.14046 -24.16199 -23.27075 -22.73467 -21.04600 -20.28769 -19.92280 -19.75065 -17.86776 -16.71792 -15.81101 -15.67071 -15.48982 -15.09149 -14.44430 -14.41004 -14.14874 -14.01720 -13.69239 -13.23143 -12.95530 -12.69256 -12.59355 -12.33106 -12.24906 -12.06085 -11.94100 -11.74559 -11.58637 -11.33113 -11.25468 -10.98428 -10.89003 -10.83961 -10.60667 -10.44331 -10.24124 -10.11523 -10.08458 -9.66506 -9.57334 -9.03981 -8.72171 -7.38354 -5.84824 -3.21739 2.89924 3.30797 3.35547 3.40313 3.51746 4.45267 4.48795 4.51621 4.54749 4.88207 4.93023 4.97719 5.14129 5.20234 5.24291 5.29031 5.30751 5.32108 5.36874 5.43447 5.44685 5.50010 5.64577 5.75136 5.77909 5.80567 5.84062 5.93210 5.95234 5.97668 6.02848 6.07844 6.09135 6.13260 6.20733 6.25643 6.36599 6.37532 6.67226 6.73818 6.94863 7.85998 7.90742 8.33811 8.51205 9.11626 9.83957 10.03376 11.33169 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.003489 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.857258 B = 8024.015695 C = 8896.631548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.062 0.938 4 C 0.112 3.888 5 N -0.719 5.719 6 C 0.508 3.492 7 O -0.556 6.556 8 C -0.144 4.144 9 C -0.096 4.096 10 C -0.088 4.088 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.114 4.114 16 N -0.748 5.748 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.410 0.590 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.170 -3.378 17.820 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.013 4.013 5 N -0.371 5.371 6 C 0.294 3.706 7 O -0.435 6.435 8 C -0.184 4.184 9 C -0.134 4.134 10 C -0.107 4.107 11 C -0.155 4.155 12 C -0.158 4.158 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.151 4.151 16 N -0.392 5.392 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.246 0.754 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.739 -3.507 18.295 22.018 hybrid contribution 0.440 -1.139 -0.634 1.376 sum 12.179 -4.646 17.661 21.950 Atomic orbital electron populations 1.22331 0.97815 1.01285 1.00908 1.20479 0.92847 0.96016 0.85136 0.92033 1.21718 0.79814 1.00986 0.98787 1.46085 1.08233 1.59077 1.23669 1.20721 0.90160 0.77499 0.82193 1.90655 1.70643 1.48416 1.33762 1.21744 0.92237 1.03350 1.01038 1.21357 0.93874 1.01216 0.96973 1.21206 0.94613 0.96008 0.98864 1.21663 0.94945 0.96758 1.02151 1.21543 0.95970 0.99787 0.98504 1.21540 0.99604 0.95875 0.98704 1.21526 0.95670 0.96863 1.01670 1.21557 0.95212 0.99939 0.98430 1.42841 1.79667 1.09583 1.07126 1.19053 1.37370 0.95622 0.85578 0.89100 1.24664 1.01322 0.97357 0.95519 1.69698 1.52367 1.35588 1.00229 0.86591 0.78219 0.86897 0.77000 1.21108 1.21739 1.20355 0.93856 0.91845 0.93328 0.92036 0.91557 0.75427 0.88835 0.88987 0.91322 0.91310 0.91121 0.91615 0.91974 0.92171 0.92017 0.92138 0.92372 0.92278 0.92083 0.91975 0.92007 0.80510 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.16 2.96 3.05 -67.94 -0.21 2.75 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 5 N -0.72 -11.32 5.39 -60.29 -0.32 -11.65 16 6 C 0.51 7.87 7.83 -10.99 -0.09 7.78 16 7 O -0.56 -10.31 15.98 5.56 0.09 -10.22 16 8 C -0.14 -1.69 5.45 -27.89 -0.15 -1.84 16 9 C -0.10 -1.06 3.97 -26.73 -0.11 -1.17 16 10 C -0.09 -0.80 2.19 -90.62 -0.20 -1.00 16 11 C -0.12 -1.00 4.96 -26.73 -0.13 -1.14 16 12 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 13 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 14 C -0.12 -0.91 5.92 -26.76 -0.16 -1.07 16 15 C -0.11 -0.96 5.20 -26.76 -0.14 -1.10 16 16 N -0.75 -16.45 4.37 -53.43 -0.23 -16.69 16 17 C -0.25 -6.54 10.41 -15.06 -0.16 -6.69 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.29 13.97 55.49 0.78 -27.52 16 21 Si 0.88 21.42 27.74 -169.99 -4.71 16.70 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.41 6.42 8.14 -40.82 -0.33 6.09 16 31 H 0.09 0.94 6.57 -51.93 -0.34 0.60 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.84 8.10 -51.92 -0.42 0.42 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -30.67 367.08 -9.16 -39.83 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.86 Total: 10.07 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.42 Total: -6.07 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.22 Total: -55.85 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.67 -9.16 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752915761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.918 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds