Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47230 * 2 1 4 4 C 1.52992 * 109.47148 * 239.99896 * 2 1 3 5 5 N 1.46499 * 109.47267 * 184.99978 * 4 2 1 6 6 C 1.34784 * 119.99971 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72827 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47542 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47469 * 180.02562 * 10 9 8 12 12 C 1.54269 * 110.03548 * 292.90875 * 11 10 9 13 13 C 1.54957 * 104.16231 * 217.13513 * 12 11 10 14 14 C 1.54887 * 102.77918 * 37.88960 * 13 12 11 15 15 C 1.53874 * 110.03516 * 175.69259 * 11 10 9 16 16 N 1.46497 * 109.46890 * 119.99742 * 2 1 3 17 17 C 1.36942 * 120.00409 * 274.99615 * 16 2 1 18 18 H 1.07996 * 119.99562 * 0.02562 * 17 16 2 19 19 C 1.38815 * 119.99782 * 180.02562 * 17 16 2 20 20 N 1.31618 * 120.00475 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99413 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47096 * 90.00175 * 21 19 17 23 23 H 1.48502 * 109.47293 * 210.00002 * 21 19 17 24 24 H 1.48496 * 109.47454 * 329.99990 * 21 19 17 25 25 H 1.08996 * 109.47633 * 59.99971 * 1 2 3 26 26 H 1.08999 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47061 * 299.99909 * 1 2 3 28 28 H 1.09004 * 109.47330 * 64.99881 * 4 2 1 29 29 H 1.09005 * 109.47124 * 305.00085 * 4 2 1 30 30 H 0.96999 * 119.99984 * 359.97438 * 5 4 2 31 31 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 32 32 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 33 33 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 34 34 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 35 35 H 1.08997 * 109.47365 * 300.00556 * 10 9 8 36 36 H 1.09004 * 109.46747 * 59.99765 * 10 9 8 37 37 H 1.09001 * 110.01571 * 54.30333 * 11 10 9 38 38 H 1.09004 * 110.48492 * 335.78553 * 12 11 10 39 39 H 1.09006 * 110.48499 * 98.42451 * 12 11 10 40 40 H 1.09001 * 110.72132 * 279.57196 * 13 12 11 41 41 H 1.08997 * 110.92207 * 156.29229 * 13 12 11 42 42 H 1.09000 * 110.49024 * 203.40896 * 14 13 12 43 43 H 1.08999 * 110.60081 * 80.81257 * 14 13 12 44 44 H 1.09007 * 110.03456 * 238.57236 * 15 11 10 45 45 H 1.09002 * 110.03131 * 359.95302 * 15 11 10 46 46 H 0.97005 * 120.00225 * 95.00479 * 16 2 1 47 47 H 0.96998 * 119.99729 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1912 7 8 3.5696 -1.8872 -3.1377 8 6 5.6750 -1.5359 -2.1311 9 6 6.1850 -2.2573 -3.3802 10 6 7.7099 -2.3660 -3.3196 11 6 8.2199 -3.0868 -4.5690 12 6 7.7576 -4.5585 -4.5559 13 6 8.9559 -5.3377 -5.1542 14 6 10.1785 -4.5928 -4.5631 15 6 9.7585 -3.1084 -4.5740 16 7 2.0183 -0.6905 1.1962 17 6 2.1491 -0.0074 2.3758 18 1 1.8920 1.0404 2.4243 19 6 2.6123 -0.6617 3.5091 20 7 2.9262 -1.9386 3.4498 21 14 2.7901 0.2700 5.1182 22 1 1.5225 0.1778 5.8863 23 1 3.8951 -0.3225 5.9139 24 1 3.0941 1.6955 4.8340 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.7516 -0.1583 -2.1370 29 1 1.6053 -1.7198 -1.2951 30 1 3.9824 -0.4621 -0.4319 31 1 6.1093 -0.5372 -2.0850 32 1 5.9637 -2.0990 -1.2435 33 1 5.7507 -3.2559 -3.4259 34 1 5.8962 -1.6946 -4.2680 35 1 8.1439 -1.3672 -3.2742 36 1 7.9990 -2.9284 -2.4317 37 1 7.8507 -2.5874 -5.4647 38 1 7.5601 -4.8873 -3.5356 39 1 6.8707 -4.6853 -5.1769 40 1 8.9533 -5.2732 -6.2423 41 1 8.9442 -6.3784 -4.8304 42 1 11.0575 -4.7451 -5.1893 43 1 10.3747 -4.9262 -3.5440 44 1 10.1359 -2.6202 -5.4726 45 1 10.1419 -2.6046 -3.6867 46 1 2.2490 -1.6318 1.1527 47 1 3.2502 -2.3956 4.2416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752922972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -72.824436 kcal Electronic energy + Delta-G solvation = -21980.146912 eV Core-core repulsion = 18775.154893 eV Total energy + Delta-G solvation = -3204.992020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43637 -38.59673 -36.34860 -34.24685 -33.47826 -31.86244 -30.11749 -28.88063 -28.70092 -26.50501 -24.84152 -23.61509 -21.82133 -20.75224 -20.17920 -19.85116 -19.49218 -17.42276 -16.56202 -16.01760 -15.64809 -15.59742 -15.21276 -14.84670 -14.35953 -13.83398 -13.64894 -13.48471 -13.14085 -12.94672 -12.73228 -12.28452 -12.13995 -12.09108 -11.79390 -11.50223 -11.36533 -11.30888 -11.21267 -10.93965 -10.90039 -10.80523 -10.76406 -10.69981 -10.55376 -10.39977 -10.36429 -10.02480 -9.73664 -9.44105 -9.00118 -8.56277 -7.06078 -5.83563 -3.13775 3.03764 3.38542 3.44276 3.45650 3.66105 4.39693 4.46182 4.52574 4.53851 4.95938 5.00742 5.04139 5.26317 5.31157 5.37821 5.42269 5.46524 5.47730 5.48380 5.51136 5.58165 5.63287 5.68589 5.75619 5.79802 5.84139 5.90329 5.94987 5.96543 6.08111 6.10255 6.13420 6.18694 6.22973 6.34192 6.34625 6.41292 6.56246 6.75289 6.88328 7.06011 7.63833 8.01567 8.34020 8.65740 9.45839 10.01069 10.36812 11.38390 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.002919 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.930244 B = 9590.464239 C =10623.727802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.714 5.714 6 C 0.508 3.492 7 O -0.559 6.559 8 C -0.142 4.142 9 C -0.101 4.101 10 C -0.113 4.113 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.122 4.122 16 N -0.724 5.724 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.410 0.590 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -1.513 -15.564 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.295 3.705 7 O -0.438 6.438 8 C -0.182 4.182 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.110 4.110 12 C -0.159 4.159 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.160 4.160 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.005 -1.700 -16.079 19.558 hybrid contribution 0.251 0.345 1.466 1.527 sum 11.256 -1.355 -14.613 18.495 Atomic orbital electron populations 1.22364 0.98370 1.01259 1.00327 1.20508 0.92648 0.95718 0.86230 0.92937 1.21655 0.79904 1.00963 0.98454 1.46041 1.08156 1.58919 1.23477 1.20680 0.90116 0.77525 0.82208 1.90645 1.70648 1.48422 1.34071 1.21685 0.92417 1.03007 1.01104 1.21333 0.94399 1.01366 0.96833 1.21749 0.95462 1.00304 0.97567 1.21778 0.94747 0.96073 0.98443 1.22483 0.97659 0.94405 1.01309 1.22515 0.95002 0.98880 1.00033 1.22355 0.97707 0.95345 1.00880 1.22231 0.95455 0.96593 1.01677 1.42475 1.78073 1.10831 1.05234 1.19226 1.36869 0.93896 0.87359 0.91133 1.24746 1.02033 0.95932 0.98023 1.69665 1.50552 1.08660 1.28935 0.86210 0.77311 0.78771 0.83975 1.21754 1.21802 1.20771 0.94210 0.93222 0.92361 0.92038 0.91995 0.75376 0.89280 0.88812 0.91167 0.91557 0.92039 0.91752 0.91150 0.91305 0.91651 0.91790 0.91811 0.92101 0.91711 0.92150 0.91697 0.78088 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.01 3.05 -67.94 -0.21 2.80 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.11 2.00 5.23 -4.05 -0.02 1.98 16 5 N -0.71 -12.01 5.39 -60.30 -0.32 -12.33 16 6 C 0.51 8.38 7.83 -10.98 -0.09 8.29 16 7 O -0.56 -10.90 15.98 5.56 0.09 -10.81 16 8 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 9 C -0.10 -1.19 4.35 -26.73 -0.12 -1.30 16 10 C -0.11 -1.08 4.34 -26.74 -0.12 -1.19 16 11 C -0.09 -0.82 2.93 -89.50 -0.26 -1.09 16 12 C -0.12 -1.11 5.50 -25.03 -0.14 -1.25 16 13 C -0.13 -1.02 6.91 -24.70 -0.17 -1.19 16 14 C -0.13 -0.97 6.83 -25.07 -0.17 -1.14 16 15 C -0.12 -0.98 6.46 -25.61 -0.17 -1.14 16 16 N -0.72 -16.98 4.56 -53.43 -0.24 -17.23 16 17 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 21 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 6.92 8.14 -40.82 -0.33 6.59 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.91 7.44 -51.93 -0.39 0.52 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.67 7.77 -51.93 -0.40 0.26 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 46 H 0.39 9.83 7.80 -40.82 -0.32 9.51 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -29.67 375.21 -9.61 -39.28 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -8.98 Total: 11.71 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.51 Total: -6.56 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.16 Total: -55.88 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.67 -9.61 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752922972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.541 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds