Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47416 * 2 1 4 4 C 1.52999 * 109.47245 * 120.00213 * 2 1 3 5 5 N 1.46503 * 109.47414 * 174.99774 * 4 2 1 6 6 C 1.34773 * 120.00250 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00143 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00115 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47279 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47400 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47126 * 180.02562 * 10 9 8 12 12 C 1.54961 * 110.92578 * 71.54077 * 11 10 9 13 13 C 1.54270 * 104.16191 * 156.29427 * 12 11 10 14 14 C 1.53869 * 106.63967 * 336.44607 * 13 12 11 15 15 C 1.54268 * 106.60115 * 359.97438 * 14 13 12 16 16 N 1.46503 * 109.47232 * 239.99998 * 2 1 3 17 17 C 1.36940 * 119.99959 * 84.99886 * 16 2 1 18 18 H 1.08007 * 119.99890 * 0.02562 * 17 16 2 19 19 C 1.38809 * 120.00266 * 179.97438 * 17 16 2 20 20 N 1.31618 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47288 * 60.00283 * 21 19 17 23 23 H 1.48504 * 109.47432 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47322 * 300.00393 * 21 19 17 25 25 H 1.09003 * 109.47109 * 299.99887 * 1 2 3 26 26 H 1.09004 * 109.47008 * 59.99869 * 1 2 3 27 27 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47169 * 55.00326 * 4 2 1 29 29 H 1.09000 * 109.46864 * 294.99922 * 4 2 1 30 30 H 0.97006 * 119.99896 * 0.02562 * 5 4 2 31 31 H 1.08999 * 109.47508 * 60.00079 * 8 6 5 32 32 H 1.09000 * 109.47087 * 299.99756 * 8 6 5 33 33 H 1.09001 * 109.47169 * 60.00300 * 9 8 6 34 34 H 1.09000 * 109.46864 * 299.99895 * 9 8 6 35 35 H 1.08995 * 109.46922 * 59.99869 * 10 9 8 36 36 H 1.09000 * 109.47141 * 299.99866 * 10 9 8 37 37 H 1.09001 * 110.67554 * 308.23161 * 11 10 9 38 38 H 1.08997 * 110.47708 * 37.64024 * 12 11 10 39 39 H 1.09002 * 110.53308 * 274.97416 * 12 11 10 40 40 H 1.09002 * 110.03399 * 217.13605 * 13 12 11 41 41 H 1.08995 * 110.02943 * 95.75505 * 13 12 11 42 42 H 1.08999 * 110.03405 * 119.26051 * 14 13 12 43 43 H 1.09001 * 110.03705 * 240.64196 * 14 13 12 44 44 H 1.08997 * 110.48788 * 142.28685 * 15 14 13 45 45 H 1.09000 * 110.48806 * 264.79985 * 15 14 13 46 46 H 0.96997 * 120.00453 * 265.00361 * 16 2 1 47 47 H 0.96998 * 120.00148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5701 -1.8834 3.1399 8 6 5.6750 -1.5361 2.1310 9 6 6.1851 -2.2563 3.3807 10 6 7.7100 -2.3662 3.3194 11 6 8.2200 -3.0871 4.5689 12 6 7.8611 -4.5939 4.5237 13 6 8.9039 -5.2580 5.4465 14 6 10.1160 -4.3114 5.4947 15 6 9.7685 -3.1045 4.5989 16 7 2.0183 -0.6906 -1.1962 17 6 2.1491 -0.0075 -2.3758 18 1 1.8926 1.0406 -2.4242 19 6 2.6123 -0.6616 -3.5091 20 7 2.9254 -1.9387 -3.4500 21 14 2.7900 0.2701 -5.1183 22 1 3.7444 1.3933 -4.9372 23 1 3.2991 -0.6482 -6.1684 24 1 1.4673 0.8059 -5.5288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -1.7199 1.2951 29 1 1.7516 -0.1583 2.1369 30 1 3.9825 -0.4622 0.4318 31 1 6.1094 -0.5374 2.0849 32 1 5.9637 -2.0991 1.2434 33 1 5.7509 -3.2550 3.4272 34 1 5.8965 -1.6929 4.2680 35 1 8.1446 -1.3678 3.2727 36 1 7.9983 -2.9299 2.4322 37 1 7.8214 -2.6225 5.4708 38 1 7.9520 -4.9772 3.5075 39 1 6.8537 -4.7586 4.9059 40 1 9.2009 -6.2246 5.0395 41 1 8.4898 -5.3856 6.4467 42 1 10.2897 -3.9790 6.5181 43 1 11.0015 -4.8187 5.1119 44 1 10.1520 -2.1824 5.0355 45 1 10.1700 -3.2461 3.5954 46 1 2.2490 -1.6318 -1.1527 47 1 3.2487 -2.3959 -4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752922973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = -73.252112 kcal Electronic energy + Delta-G solvation = -21928.408798 eV Core-core repulsion = 18723.398233 eV Total energy + Delta-G solvation = -3205.010565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41909 -38.53466 -36.34877 -34.30426 -33.47631 -31.86271 -30.14517 -28.87255 -28.70381 -26.52627 -24.86262 -23.61438 -21.82146 -20.43822 -20.17310 -20.03220 -19.58333 -17.42238 -16.55258 -16.06851 -15.64674 -15.62735 -15.11177 -14.84776 -14.34551 -13.85533 -13.67054 -13.49642 -13.21333 -12.93276 -12.69035 -12.31837 -12.12692 -12.07846 -11.78134 -11.52829 -11.45536 -11.37140 -11.24559 -10.88135 -10.87203 -10.77101 -10.71538 -10.63923 -10.61516 -10.40820 -10.37598 -10.04053 -9.73088 -9.44061 -8.99538 -8.56154 -7.05976 -5.83194 -3.13486 3.03999 3.38976 3.44352 3.45022 3.66108 4.37592 4.45146 4.52469 4.53318 4.95419 5.00654 5.05352 5.25209 5.30166 5.35833 5.42980 5.46088 5.47589 5.48607 5.50743 5.57994 5.61214 5.68471 5.77749 5.80916 5.82353 5.90963 5.95118 5.96352 6.03732 6.10425 6.13972 6.18900 6.22477 6.33472 6.34798 6.41747 6.56455 6.75516 6.88467 7.06165 7.63469 8.01729 8.34406 8.65901 9.46098 10.01307 10.37109 11.38703 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.002846 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.737889 B = 9834.615501 C =10814.349125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.714 5.714 6 C 0.508 3.492 7 O -0.559 6.559 8 C -0.142 4.142 9 C -0.101 4.101 10 C -0.113 4.113 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.126 4.126 14 C -0.125 4.125 15 C -0.121 4.121 16 N -0.723 5.723 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.410 0.590 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -1.384 15.801 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.295 3.705 7 O -0.438 6.438 8 C -0.182 4.182 9 C -0.139 4.139 10 C -0.150 4.150 11 C -0.110 4.110 12 C -0.159 4.159 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.159 4.159 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.976 -1.593 16.315 19.728 hybrid contribution 0.275 0.308 -1.442 1.500 sum 11.250 -1.285 14.873 18.693 Atomic orbital electron populations 1.22363 0.98372 1.01255 1.00323 1.20510 0.92648 0.95717 0.86231 0.92938 1.21656 0.79902 1.00961 0.98457 1.46040 1.08160 1.58879 1.23504 1.20679 0.90116 0.77512 0.82225 1.90647 1.70672 1.48574 1.33915 1.21683 0.92410 1.03023 1.01096 1.21319 0.94350 1.01347 0.96839 1.21622 0.95476 1.00425 0.97492 1.22152 0.94834 0.95604 0.98427 1.22464 0.98726 0.94867 0.99840 1.22140 0.95784 0.98594 0.99877 1.22126 0.97994 0.96366 0.99809 1.22426 0.95768 0.97809 0.99890 1.42465 1.78082 1.10820 1.05229 1.19181 1.36990 0.93859 0.87388 0.91189 1.24744 1.02019 0.95924 0.98021 1.69653 1.50508 1.08622 1.29066 0.86284 0.77780 0.78575 0.83592 1.21258 1.21735 1.21308 0.94221 0.92355 0.93226 0.91999 0.92034 0.75372 0.89267 0.88804 0.91216 0.91535 0.91948 0.91744 0.90698 0.91481 0.91525 0.92102 0.92097 0.92146 0.92141 0.91923 0.91558 0.78086 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.00 3.05 -67.93 -0.21 2.80 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.11 2.00 5.23 -4.04 -0.02 1.98 16 5 N -0.71 -11.99 5.39 -60.29 -0.32 -12.32 16 6 C 0.51 8.36 7.83 -10.99 -0.09 8.28 16 7 O -0.56 -10.90 15.98 5.56 0.09 -10.81 16 8 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 9 C -0.10 -1.17 4.40 -26.73 -0.12 -1.29 16 10 C -0.11 -1.06 4.72 -26.73 -0.13 -1.19 16 11 C -0.09 -0.82 2.86 -88.59 -0.25 -1.07 16 12 C -0.12 -1.10 5.71 -25.03 -0.14 -1.25 16 13 C -0.13 -1.02 6.80 -25.61 -0.17 -1.19 16 14 C -0.13 -0.95 6.80 -25.62 -0.17 -1.12 16 15 C -0.12 -0.97 6.27 -25.07 -0.16 -1.12 16 16 N -0.72 -16.98 4.56 -53.42 -0.24 -17.22 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 21 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.41 6.92 8.14 -40.82 -0.33 6.59 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.90 7.61 -51.93 -0.40 0.51 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.63 7.95 -51.93 -0.41 0.21 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 46 H 0.39 9.83 7.80 -40.82 -0.32 9.51 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -29.64 376.12 -9.64 -39.28 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -9.02 Total: 11.65 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.51 Total: -6.52 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.16 Total: -55.87 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.64 -9.64 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752922973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.972 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds