Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.53001 * 109.47542 * 120.00188 * 2 1 3 5 5 C 1.53001 * 109.46802 * 295.00381 * 4 2 1 6 6 C 1.52994 * 109.47033 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47130 * 59.99756 * 6 5 4 8 8 C 1.52997 * 109.47338 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47343 * 299.99573 * 6 5 4 10 10 C 1.50705 * 109.47224 * 240.00377 * 2 1 3 11 11 O 1.21289 * 119.99597 * 240.00139 * 10 2 1 12 12 N 1.34776 * 120.00198 * 59.99303 * 10 2 1 13 13 C 1.46502 * 119.99960 * 179.97438 * 12 10 2 14 14 C 1.53952 * 113.73599 * 106.26593 * 13 12 10 15 15 N 1.47808 * 86.03517 * 90.88217 * 14 13 12 16 16 C 1.36933 * 134.45725 * 204.64095 * 15 14 13 17 17 H 1.07996 * 120.00846 * 173.35075 * 16 15 14 18 18 C 1.38814 * 119.99714 * 353.35046 * 16 15 14 19 19 N 1.31625 * 120.00245 * 5.06241 * 18 16 15 20 20 Si 1.86809 * 120.00055 * 185.06239 * 18 16 15 21 21 H 1.48500 * 109.46973 * 94.98689 * 20 18 16 22 22 H 1.48500 * 109.47017 * 214.98741 * 20 18 16 23 23 H 1.48499 * 109.46841 * 334.98626 * 20 18 16 24 24 C 1.47582 * 91.05267 * 24.54774 * 15 14 13 25 25 H 1.09006 * 109.46884 * 60.00187 * 1 2 3 26 26 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47309 * 299.99993 * 1 2 3 28 28 H 1.09003 * 109.46547 * 54.99769 * 4 2 1 29 29 H 1.08999 * 109.47424 * 174.99973 * 4 2 1 30 30 H 1.09002 * 109.46770 * 299.99789 * 5 4 2 31 31 H 1.08999 * 109.47464 * 59.99617 * 5 4 2 32 32 H 1.08993 * 109.47472 * 60.00488 * 7 6 5 33 33 H 1.09000 * 109.46866 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47326 * 299.99827 * 7 6 5 35 35 H 1.08999 * 109.47165 * 59.99793 * 8 6 5 36 36 H 1.08996 * 109.47444 * 180.02562 * 8 6 5 37 37 H 1.09004 * 109.47243 * 299.99949 * 8 6 5 38 38 H 1.09007 * 109.46838 * 60.00100 * 9 6 5 39 39 H 1.08996 * 109.47161 * 180.02562 * 9 6 5 40 40 H 1.08998 * 109.47143 * 300.00664 * 9 6 5 41 41 H 0.96996 * 119.99562 * 0.02562 * 12 10 2 42 42 H 1.09000 * 112.94445 * 334.67371 * 13 12 10 43 43 H 1.09004 * 113.76381 * 205.14881 * 14 13 12 44 44 H 1.09003 * 113.76793 * 336.54093 * 14 13 12 45 45 H 0.96995 * 119.99775 * 180.02562 * 19 18 16 46 46 H 1.08997 * 113.76639 * 221.14963 * 24 15 14 47 47 H 1.08998 * 113.76570 * 89.75452 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.1448 -0.6527 3.7445 7 6 3.6696 -0.7629 3.6835 8 6 1.7405 0.1377 4.9905 9 6 1.5343 -2.0541 3.8087 10 6 2.0324 -0.7103 -1.2305 11 8 2.7297 -1.6965 -1.1192 12 7 1.7067 -0.2499 -2.4546 13 6 2.1956 -0.9402 -3.6508 14 6 1.1119 -1.7507 -4.3849 15 7 0.8686 -0.5214 -5.1688 16 6 -0.2022 -0.0210 -5.8601 17 1 -0.1603 0.9759 -6.2732 18 6 -1.3418 -0.7953 -6.0300 19 7 -1.4328 -1.9701 -5.4434 20 14 -2.7462 -0.1700 -7.0913 21 1 -2.6045 -0.7091 -8.4677 22 1 -4.0395 -0.6177 -6.5149 23 1 -2.7109 1.3140 -7.1348 24 6 2.2418 -0.0490 -4.9052 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -1.7198 1.2950 29 1 3.1264 -0.7995 1.2055 30 1 2.0699 1.0674 2.4493 31 1 0.5490 0.1471 2.5390 32 1 4.1046 0.2354 3.6379 33 1 4.0325 -1.2774 4.5733 34 1 3.9580 -1.3259 2.7958 35 1 0.6543 0.2167 5.0342 36 1 2.1039 -0.3761 5.8805 37 1 2.1758 1.1360 4.9447 38 1 1.8227 -2.6171 2.9209 39 1 1.8969 -2.5680 4.6989 40 1 0.4480 -1.9756 3.8521 41 1 1.1493 0.5389 -2.5435 42 1 3.1157 -1.4970 -3.4739 43 1 1.5065 -2.5776 -4.9755 44 1 0.2749 -2.0412 -3.7500 45 1 -2.2289 -2.5112 -5.5625 46 1 2.3050 1.0166 -4.6851 47 1 2.9688 -0.3749 -5.6491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753391802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -16.167503 kcal Electronic energy + Delta-G solvation = -22889.062348 eV Core-core repulsion = 19686.527158 eV Total energy + Delta-G solvation = -3202.535191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78295 -38.33097 -37.37802 -34.28211 -33.15819 -31.72982 -28.87372 -27.49824 -27.39543 -27.33286 -25.17826 -24.80711 -23.33378 -21.84612 -19.51265 -19.20734 -18.75025 -16.84430 -16.57090 -15.69281 -15.32259 -14.89912 -14.74407 -14.61995 -14.23998 -13.86199 -13.75102 -13.45767 -13.10191 -12.74753 -12.59689 -12.53487 -12.31165 -12.10985 -11.81972 -11.71878 -11.53990 -11.43388 -11.23882 -11.10680 -10.91838 -10.88920 -10.58178 -10.51802 -10.44387 -10.33464 -10.25541 -9.82634 -9.50104 -9.30983 -8.82786 -8.32123 -6.89727 -5.79094 -3.11689 3.07636 3.36976 3.42254 3.44509 3.66069 4.43718 4.57445 4.67910 4.68803 4.96314 5.03398 5.09678 5.13316 5.37212 5.39041 5.40906 5.46136 5.56269 5.58720 5.61046 5.62838 5.65023 5.70988 5.76602 5.85662 5.91184 5.94860 6.01709 6.04943 6.12946 6.15560 6.22563 6.26794 6.27515 6.42654 6.44643 6.49112 6.54775 6.87714 7.23733 7.35211 7.60198 7.95167 8.09714 8.72747 9.01961 9.68699 10.58129 11.37701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026808 B = 0.003319 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.209012 B = 8432.991578 C = 8928.831538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.101 4.101 5 C -0.110 4.110 6 C -0.070 4.070 7 C -0.145 4.145 8 C -0.141 4.141 9 C -0.145 4.145 10 C 0.515 3.485 11 O -0.553 6.553 12 N -0.693 5.693 13 C 0.089 3.911 14 C 0.155 3.845 15 N -0.611 5.611 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.109 3.891 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.402 0.598 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.254 0.746 46 H 0.046 0.954 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 5.058 18.079 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 H 0.109 0.891 4 C -0.139 4.139 5 C -0.148 4.148 6 C -0.070 4.070 7 C -0.202 4.202 8 C -0.198 4.198 9 C -0.202 4.202 10 C 0.301 3.699 11 O -0.431 6.431 12 N -0.342 5.342 13 C -0.017 4.017 14 C 0.028 3.972 15 N -0.338 5.338 16 C -0.355 4.355 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.017 4.017 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.237 0.763 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.009 4.347 18.014 19.812 hybrid contribution -1.139 0.603 -0.950 1.602 sum 5.869 4.951 17.064 18.712 Atomic orbital electron populations 1.21821 0.92923 1.03031 1.02503 1.21310 0.97664 1.00549 0.93551 0.89086 1.21516 1.01785 0.99245 0.91369 1.21721 1.00967 0.98650 0.93420 1.20533 0.95714 0.95695 0.95031 1.21944 0.94712 1.01646 1.01905 1.21872 1.01133 0.99740 0.97051 1.21946 1.00510 0.95911 1.01879 1.20581 0.80015 0.84613 0.84666 1.90649 1.38937 1.26581 1.86948 1.45560 1.52308 1.31495 1.04827 1.22857 0.98321 0.96042 0.84523 1.22667 0.94147 0.89504 0.90850 1.46135 1.06293 1.20202 1.61196 1.19003 0.91058 0.97849 1.27585 0.90285 1.24829 0.98476 0.96351 1.00546 1.69851 1.28594 1.11851 1.45890 0.86170 0.81765 0.77901 0.80340 1.21651 1.21736 1.20587 1.22922 0.88979 0.97002 0.92818 0.91798 0.91986 0.91680 0.90984 0.90964 0.92117 0.91651 0.92878 0.93101 0.91897 0.92779 0.92923 0.92845 0.91889 0.93096 0.92771 0.76303 0.89456 0.94670 0.90970 0.93632 0.93602 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.84 37.16 0.33 -1.43 16 2 C -0.11 -1.37 2.72 -91.77 -0.25 -1.62 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.10 -1.18 3.32 -26.73 -0.09 -1.27 16 5 C -0.11 -1.02 4.02 -26.73 -0.11 -1.13 16 6 C -0.07 -0.61 0.80 -154.51 -0.12 -0.73 16 7 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 8 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 9 C -0.15 -1.32 8.12 37.16 0.30 -1.02 16 10 C 0.52 8.65 7.15 -10.98 -0.08 8.57 16 11 O -0.55 -11.08 15.54 5.55 0.09 -11.00 16 12 N -0.69 -12.09 5.26 -55.34 -0.29 -12.38 16 13 C 0.09 1.74 4.40 -70.14 -0.31 1.43 16 14 C 0.15 3.72 7.24 -2.84 -0.02 3.70 16 15 N -0.61 -15.30 3.70 -177.89 -0.66 -15.96 16 16 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 19 N -0.92 -27.09 11.51 55.49 0.64 -26.45 16 20 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.11 2.18 8.68 -2.97 -0.03 2.16 16 25 H 0.06 0.82 7.56 -51.93 -0.39 0.42 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 28 H 0.07 0.94 6.43 -51.93 -0.33 0.60 16 29 H 0.07 0.91 6.24 -51.93 -0.32 0.59 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.64 6.43 -51.92 -0.33 0.30 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.40 6.63 8.16 -40.82 -0.33 6.30 16 42 H 0.09 1.68 7.51 -51.93 -0.39 1.29 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.94 7.37 -51.93 -0.38 1.56 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -31.37 366.24 -8.29 -39.66 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.55 Total: 3.43 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.01 Total: 0.31 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.31 Total: -54.79 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.37 -8.29 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753391802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.497 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds